Wall clock time and date at job start Tue Mar 31 2020 05:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.66297 * 2 1 4 4 C 1.50070 * 109.38167 * 120.16269 * 2 1 3 5 5 O 1.21276 * 118.49837 * 287.27965 * 4 2 1 6 6 N 1.33387 * 123.00654 * 107.49851 * 4 2 1 7 7 C 1.46499 * 117.69895 * 184.10000 * 6 4 2 8 8 C 1.45638 * 124.59284 * 4.07829 * 6 4 2 9 9 C 1.52988 * 110.77559 * 338.11933 * 8 6 4 10 10 N 1.47052 * 109.56855 * 239.70697 * 2 1 3 11 11 S 1.65596 * 121.35316 * 102.93782 * 10 2 1 12 12 O 1.42102 * 104.27570 * 153.64612 * 11 10 2 13 13 O 1.42100 * 104.28084 * 25.78556 * 11 10 2 14 14 C 1.81407 * 104.44839 * 269.71262 * 11 10 2 15 15 C 1.53001 * 109.47224 * 179.97438 * 14 11 10 16 16 C 1.53005 * 109.46651 * 60.00479 * 15 14 11 17 17 C 1.52999 * 109.47144 * 300.00680 * 15 14 11 18 18 C 1.50696 * 109.47192 * 180.02562 * 15 14 11 19 19 H 1.08009 * 119.99792 * 358.10440 * 18 15 14 20 20 C 1.37878 * 120.00033 * 178.10217 * 18 15 14 21 21 N 1.31510 * 119.99946 * 2.57037 * 20 18 15 22 22 Si 1.86803 * 119.99862 * 182.57172 * 20 18 15 23 23 H 1.48503 * 109.46851 * 265.00807 * 22 20 18 24 24 H 1.48503 * 109.46832 * 145.00794 * 22 20 18 25 25 H 1.48501 * 109.47101 * 25.00901 * 22 20 18 26 26 H 1.08995 * 109.46586 * 180.29449 * 1 2 3 27 27 H 1.09001 * 109.46790 * 300.29622 * 1 2 3 28 28 H 1.08997 * 109.47346 * 60.29617 * 1 2 3 29 29 H 1.08998 * 109.47511 * 269.97979 * 7 6 4 30 30 H 1.09001 * 109.47731 * 29.97984 * 7 6 4 31 31 H 1.09000 * 109.47159 * 149.97774 * 7 6 4 32 32 H 1.09006 * 109.21732 * 217.79128 * 8 6 4 33 33 H 1.09004 * 109.18488 * 98.43316 * 8 6 4 34 34 H 1.09000 * 109.72476 * 287.05551 * 9 8 6 35 35 H 1.08998 * 109.72134 * 166.39785 * 9 8 6 36 36 H 1.09006 * 109.46731 * 60.00604 * 14 11 10 37 37 H 1.08995 * 109.47164 * 300.00637 * 14 11 10 38 38 H 1.09000 * 109.46810 * 173.32383 * 16 15 14 39 39 H 1.08999 * 109.47030 * 293.32531 * 16 15 14 40 40 H 1.08998 * 109.47195 * 53.32668 * 16 15 14 41 41 H 1.09001 * 109.46944 * 299.99576 * 17 15 14 42 42 H 1.08996 * 109.47438 * 59.99651 * 17 15 14 43 43 H 1.09003 * 109.46583 * 179.97438 * 17 15 14 44 44 H 0.96997 * 119.99969 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0265 0.0000 4 6 2.0280 -0.7113 1.2240 5 8 1.9214 -0.1585 2.2981 6 7 2.5865 -1.9220 1.1841 7 6 2.9483 -2.5474 2.4585 8 6 2.8613 -2.6659 -0.0374 9 6 1.9783 -2.1709 -1.1846 10 7 2.0226 -0.6989 -1.1964 11 16 2.6095 0.1351 -2.5010 12 8 3.5126 -0.7714 -3.1191 13 8 3.0653 1.3651 -1.9546 14 6 1.1583 0.4058 -3.5553 15 6 1.5754 1.1773 -4.8090 16 6 2.6222 0.3702 -5.5797 17 6 2.1699 2.5273 -4.4029 18 6 0.3698 1.4027 -5.6846 19 1 -0.5915 1.0062 -5.3924 20 6 0.4938 2.1151 -6.8585 21 7 1.6733 2.5545 -7.2396 22 14 -1.0137 2.4562 -7.9077 23 1 -1.1267 1.4184 -8.9639 24 1 -0.8845 3.7938 -8.5397 25 1 -2.2281 2.4275 -7.0535 26 1 -0.3632 -1.0276 0.0053 27 1 -0.3633 0.5184 0.8873 28 1 -0.3634 0.5092 -0.8926 29 1 3.9694 -2.2716 2.7217 30 1 2.2672 -2.2050 3.2376 31 1 2.8774 -3.6310 2.3645 32 1 2.6652 -3.7242 0.1352 33 1 3.9089 -2.5348 -0.3087 34 1 0.9528 -2.5068 -1.0308 35 1 2.3546 -2.5577 -2.1316 36 1 0.4127 0.9812 -3.0064 37 1 0.7345 -0.5559 -3.8442 38 1 2.8321 0.8611 -6.5300 39 1 3.5383 0.3087 -4.9923 40 1 2.2418 -0.6342 -5.7658 41 1 1.4241 3.1023 -3.8539 42 1 3.0418 2.3646 -3.7695 43 1 2.4674 3.0767 -5.2961 44 1 1.7604 3.0559 -8.0653 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451425573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:16 Heat of formation + Delta-G solvation = -94.035234 kcal Electronic energy + Delta-G solvation = -26914.436689 eV Core-core repulsion = 23187.624241 eV Total energy + Delta-G solvation = -3726.812448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68811 -37.06166 -36.73906 -36.33890 -35.52636 -35.35824 -31.73278 -31.41250 -29.00378 -27.28987 -26.68678 -25.77790 -25.27781 -23.99935 -23.41784 -19.75320 -19.31282 -17.96203 -17.76745 -17.53140 -16.37093 -16.24660 -15.87628 -15.39007 -15.34038 -14.80603 -14.63663 -14.17724 -13.87440 -13.22890 -13.20287 -13.08168 -13.05309 -12.67420 -12.58121 -12.35392 -12.26501 -12.15763 -11.95771 -11.76055 -11.57562 -11.32567 -11.16556 -11.10787 -11.00554 -10.76769 -10.43248 -10.37085 -10.22104 -10.07865 -9.71797 -9.66909 -9.12681 -8.93790 -8.72125 -8.43591 -6.08087 -4.20634 0.65022 2.43188 2.64237 2.96439 3.22546 3.30689 3.32649 4.18699 4.23376 4.33732 4.40650 4.47305 4.81493 4.89978 4.95227 5.01163 5.10891 5.16698 5.18828 5.28049 5.39802 5.45035 5.58289 5.60393 5.64273 5.67661 5.86055 5.98777 6.07321 6.31337 6.38009 6.62560 6.72949 6.84348 6.98038 7.18752 7.25148 7.42881 7.63070 7.93371 7.94188 8.04008 8.28090 8.77997 9.45207 10.92955 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026955 B = 0.003910 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.514678 B = 7159.383648 C = 7410.850070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.135 3.865 3 H 0.136 0.864 4 C 0.522 3.478 5 O -0.545 6.545 6 N -0.605 5.605 7 C 0.077 3.923 8 C 0.100 3.900 9 C 0.104 3.896 10 N -1.011 6.011 11 S 2.589 3.411 12 O -0.957 6.957 13 O -0.957 6.957 14 C -0.578 4.578 15 C 0.081 3.919 16 C -0.161 4.161 17 C -0.165 4.165 18 C -0.502 4.502 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.896 3.104 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.024 0.976 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.027 0.973 43 H 0.096 0.904 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 -11.524 13.331 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 H 0.153 0.847 4 C 0.308 3.692 5 O -0.422 6.422 6 N -0.338 5.338 7 C -0.066 4.066 8 C -0.025 4.025 9 C -0.022 4.022 10 N -0.847 5.847 11 S 2.689 3.311 12 O -0.947 6.947 13 O -0.947 6.947 14 C -0.712 4.712 15 C 0.079 3.921 16 C -0.218 4.218 17 C -0.222 4.222 18 C -0.541 4.541 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.724 3.276 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.116 0.884 39 H 0.043 0.957 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.046 0.954 43 H 0.115 0.885 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.296 -10.883 13.641 17.453 hybrid contribution -1.448 -0.044 -0.774 1.642 sum -1.152 -10.926 12.867 16.919 Atomic orbital electron populations 1.22124 0.92250 1.03301 1.04150 1.21107 0.96329 0.98255 0.81764 0.84675 1.20089 0.77085 0.81107 0.90873 1.90717 1.56989 1.64404 1.30138 1.47106 1.60950 1.17813 1.07890 1.21746 1.01317 0.97442 0.86073 1.21821 1.00703 0.95991 0.83948 1.21749 1.00633 0.79700 1.00103 1.58502 1.80889 1.14585 1.30727 1.05946 0.77911 0.73612 0.73584 1.93542 1.60856 1.64422 1.75896 1.93545 1.79681 1.44424 1.77062 1.30592 1.17393 1.10051 1.13127 1.17960 0.95916 0.90796 0.87440 1.22239 0.96222 0.98984 1.04385 1.22281 0.98163 0.99677 1.02122 1.20933 0.93624 1.34600 1.04964 0.92249 1.24939 0.96027 0.95401 0.97371 1.69793 1.22091 1.37038 1.23156 0.86520 0.82968 0.77768 0.80389 1.20706 1.21060 1.19881 0.91728 0.90212 0.90378 0.92565 0.90293 0.91144 0.89342 0.90784 0.90183 0.86754 0.86233 0.86258 0.88438 0.95718 0.94627 0.94371 0.95416 0.88517 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.37 37.16 0.35 -1.36 16 2 C 0.13 1.80 3.15 -69.08 -0.22 1.58 16 3 H 0.14 1.98 6.89 -51.92 -0.36 1.63 16 4 C 0.52 7.26 6.81 -11.91 -0.08 7.18 16 5 O -0.55 -9.02 16.25 5.56 0.09 -8.93 16 6 N -0.60 -6.76 3.20 -182.94 -0.59 -7.35 16 7 C 0.08 0.68 10.19 59.85 0.61 1.29 16 8 C 0.10 0.90 6.57 -4.51 -0.03 0.87 16 9 C 0.10 1.03 6.33 -3.63 -0.02 1.01 16 10 N -1.01 -13.55 2.88 -107.89 -0.31 -13.86 16 11 S 2.59 45.79 4.51 -107.50 -0.48 45.30 16 12 O -0.96 -18.54 14.50 -57.54 -0.83 -19.38 16 13 O -0.96 -19.60 14.26 -57.54 -0.82 -20.42 16 14 C -0.58 -10.60 5.11 37.16 0.19 -10.41 16 15 C 0.08 1.90 0.52 -155.66 -0.08 1.82 16 16 C -0.16 -3.80 7.61 37.16 0.28 -3.52 16 17 C -0.16 -3.96 7.75 37.16 0.29 -3.67 16 18 C -0.50 -12.75 8.01 -34.44 -0.28 -13.02 16 19 H 0.06 1.46 7.75 -52.48 -0.41 1.06 16 20 C 0.06 1.67 5.13 -17.82 -0.09 1.58 16 21 N -0.88 -23.58 9.33 55.43 0.52 -23.06 16 22 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H 0.06 0.60 7.52 -51.93 -0.39 0.21 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.80 7.77 -51.93 -0.40 0.40 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.77 7.23 -51.93 -0.38 0.40 16 31 H 0.07 0.40 7.80 -51.93 -0.41 0.00 16 32 H 0.09 0.49 7.85 -51.93 -0.41 0.09 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.61 7.53 -51.93 -0.39 0.22 16 35 H 0.11 1.09 7.07 -51.93 -0.37 0.72 16 36 H 0.12 1.98 7.77 -51.92 -0.40 1.58 16 37 H 0.12 1.93 8.14 -51.93 -0.42 1.50 16 38 H 0.10 2.52 5.98 -51.93 -0.31 2.21 16 39 H 0.02 0.55 5.96 -51.93 -0.31 0.24 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 43 H 0.10 2.52 6.02 -51.93 -0.31 2.21 16 44 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -32.76 348.12 -8.08 -40.84 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.80 Total: 3.14 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 0.92 Total: -16.67 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: -0.38 Total: -44.27 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -1.56 Total: -48.73 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 45.79 SS G_CDS: -0.48 Total: 45.30 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.76 -8.08 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451425573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.199 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds