Wall clock time and date at job start Tue Mar 31 2020 05:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.66980 * 2 1 4 4 C 1.50445 * 109.58183 * 239.71534 * 2 1 3 5 5 O 1.21277 * 118.48345 * 47.47513 * 4 2 1 6 6 N 1.33376 * 123.02509 * 227.50109 * 4 2 1 7 7 C 1.46503 * 117.70163 * 184.29318 * 6 4 2 8 8 C 1.45644 * 124.59207 * 4.27414 * 6 4 2 9 9 C 1.52995 * 110.77344 * 338.12439 * 8 6 4 10 10 N 1.47050 * 109.56713 * 120.30306 * 2 1 3 11 11 S 1.65599 * 121.35010 * 342.82940 * 10 2 1 12 12 O 1.42090 * 104.27813 * 41.54660 * 11 10 2 13 13 O 1.42107 * 104.27658 * 169.40768 * 11 10 2 14 14 C 1.81404 * 104.44980 * 285.47508 * 11 10 2 15 15 C 1.52998 * 109.47325 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.46953 * 300.00254 * 15 14 11 17 17 C 1.53001 * 109.47013 * 59.99996 * 15 14 11 18 18 C 1.50695 * 109.47602 * 180.02562 * 15 14 11 19 19 H 1.08006 * 119.99841 * 359.97438 * 18 15 14 20 20 C 1.37876 * 120.00505 * 180.02562 * 18 15 14 21 21 N 1.31510 * 119.99751 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 120.00087 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47283 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47096 * 119.99659 * 22 20 18 25 25 H 1.48493 * 109.46976 * 239.99494 * 22 20 18 26 26 H 1.09001 * 109.47511 * 295.15837 * 1 2 3 27 27 H 1.09006 * 109.46978 * 55.15912 * 1 2 3 28 28 H 1.09002 * 109.47452 * 175.15730 * 1 2 3 29 29 H 1.08996 * 109.47447 * 269.98116 * 7 6 4 30 30 H 1.09001 * 109.46997 * 29.98594 * 7 6 4 31 31 H 1.09005 * 109.46647 * 149.97772 * 7 6 4 32 32 H 1.08997 * 109.21897 * 217.78850 * 8 6 4 33 33 H 1.09006 * 109.18078 * 98.43075 * 8 6 4 34 34 H 1.09001 * 109.71378 * 287.04978 * 9 8 6 35 35 H 1.08996 * 109.75422 * 166.42362 * 9 8 6 36 36 H 1.08999 * 109.46992 * 300.00201 * 14 11 10 37 37 H 1.08998 * 109.47106 * 59.99918 * 14 11 10 38 38 H 1.08998 * 109.47133 * 59.99746 * 16 15 14 39 39 H 1.09001 * 109.46961 * 179.97438 * 16 15 14 40 40 H 1.09003 * 109.47198 * 299.99678 * 16 15 14 41 41 H 1.08999 * 109.47655 * 60.00367 * 17 15 14 42 42 H 1.09001 * 109.47170 * 180.02562 * 17 15 14 43 43 H 1.09007 * 109.47646 * 299.99962 * 17 15 14 44 44 H 0.97003 * 120.00425 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0341 -0.7148 -1.2240 5 8 1.5492 -0.4330 -2.2993 6 7 2.9895 -1.6445 -1.1810 7 6 3.4596 -2.1974 -2.4536 8 6 3.5986 -2.1482 0.0424 9 6 3.4250 -1.1478 1.1868 10 7 2.0224 -0.6991 1.1963 11 16 1.0378 -0.9766 2.4985 12 8 -0.2021 -1.3657 1.9238 13 8 1.7802 -1.8722 3.3147 14 6 0.8860 0.6416 3.3042 15 6 -0.0107 0.5153 4.5374 16 6 -1.3964 0.0252 4.1123 17 6 0.6062 -0.4859 5.5161 18 6 -0.1374 1.8596 5.2063 19 1 0.3713 2.7183 4.7935 20 6 -0.9017 1.9934 6.3460 21 7 -1.5206 0.9477 6.8491 22 14 -1.0580 3.6598 7.1756 23 1 -0.2714 4.6658 6.4177 24 1 -2.4859 4.0670 7.2031 25 1 -0.5417 3.5713 8.5651 26 1 -0.3634 0.4369 0.9302 27 1 -0.3633 0.5871 -0.8435 28 1 -0.3634 -1.0240 -0.0868 29 1 2.8595 -3.0689 -2.7149 30 1 3.3643 -1.4431 -3.2347 31 1 4.5049 -2.4913 -2.3580 32 1 4.6618 -2.3164 -0.1290 33 1 3.1257 -3.0916 0.3157 34 1 4.0836 -0.2933 1.0312 35 1 3.6640 -1.6282 2.1355 36 1 1.8731 0.9905 3.6074 37 1 0.4469 1.3549 2.6067 38 1 -1.3051 -0.9472 3.6282 39 1 -2.0351 -0.0653 4.9909 40 1 -1.8359 0.7384 3.4149 41 1 1.5934 -0.1368 5.8191 42 1 -0.0329 -0.5762 6.3945 43 1 0.6974 -1.4583 5.0321 44 1 -2.0587 1.0418 7.6507 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451425575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:18 Heat of formation + Delta-G solvation = -82.677035 kcal Electronic energy + Delta-G solvation = -27093.011334 eV Core-core repulsion = 23366.691415 eV Total energy + Delta-G solvation = -3726.319920 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.64852 -37.01839 -36.94912 -36.35012 -35.57728 -35.26135 -31.75327 -31.39208 -28.78827 -27.25624 -26.68598 -25.77290 -25.27287 -23.89130 -23.32707 -19.71315 -19.47154 -18.17577 -17.59597 -17.34475 -16.24536 -16.04509 -15.88581 -15.68223 -15.36276 -14.97984 -14.75670 -14.24605 -13.43181 -13.41280 -13.15785 -13.12178 -12.92004 -12.65527 -12.57928 -12.44918 -12.25050 -12.16505 -11.85663 -11.57401 -11.53509 -11.22474 -11.12769 -10.97034 -10.82772 -10.54573 -10.39778 -10.29962 -10.24575 -10.01622 -9.70543 -9.64332 -9.09799 -8.92322 -8.69495 -8.44438 -6.07619 -4.19769 0.66672 2.45052 2.64353 2.97918 3.22629 3.31435 3.33769 4.17422 4.23931 4.33887 4.39211 4.53256 4.77351 4.87085 4.97364 5.08380 5.12686 5.18029 5.24927 5.28619 5.49101 5.51744 5.58574 5.64338 5.67514 5.88376 5.92469 6.10438 6.30158 6.40082 6.51253 6.64715 6.73746 6.84438 6.98081 7.19550 7.26126 7.44729 7.63968 7.93204 7.96095 8.04698 8.28043 8.79024 9.46132 10.93719 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027300 B = 0.003983 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.379820 B = 7028.747623 C = 7307.808156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 H 0.106 0.894 4 C 0.518 3.482 5 O -0.543 6.543 6 N -0.605 5.605 7 C 0.077 3.923 8 C 0.100 3.900 9 C 0.101 3.899 10 N -1.012 6.012 11 S 2.591 3.409 12 O -0.953 6.953 13 O -0.960 6.960 14 C -0.580 4.580 15 C 0.082 3.918 16 C -0.164 4.164 17 C -0.163 4.163 18 C -0.502 4.502 19 H 0.060 0.940 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.896 3.104 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.028 0.972 39 H 0.095 0.905 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.095 0.905 43 H 0.027 0.973 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.214 -4.293 -12.699 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.035 3.965 3 H 0.124 0.876 4 C 0.305 3.695 5 O -0.420 6.420 6 N -0.338 5.338 7 C -0.066 4.066 8 C -0.025 4.025 9 C -0.024 4.024 10 N -0.849 5.849 11 S 2.692 3.308 12 O -0.943 6.943 13 O -0.951 6.951 14 C -0.714 4.714 15 C 0.079 3.921 16 C -0.222 4.222 17 C -0.221 4.221 18 C -0.541 4.541 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.723 3.277 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.047 0.953 39 H 0.114 0.886 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.046 0.954 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.479 -5.068 -12.889 17.367 hybrid contribution 0.263 1.554 0.551 1.670 sum 10.742 -3.513 -12.338 16.732 Atomic orbital electron populations 1.22472 0.89751 1.06223 1.04023 1.21135 0.97269 0.96275 0.81841 0.87642 1.20286 0.78889 0.79338 0.90984 1.90708 1.56350 1.65035 1.29956 1.47113 1.38678 1.40198 1.07852 1.21746 0.99066 0.99610 0.86156 1.21828 0.98740 0.97900 0.84010 1.21794 0.82276 0.98066 1.00309 1.58444 1.22904 1.72896 1.30686 1.05904 0.73479 0.78790 0.72644 1.93620 1.43112 1.82102 1.75441 1.93512 1.72003 1.62177 1.67411 1.30588 1.10078 1.18914 1.11799 1.17954 0.89709 0.97369 0.87022 1.22283 1.00109 0.97494 1.02278 1.22275 1.00617 0.95834 1.03380 1.20967 1.30281 0.93043 1.09857 0.92219 1.24935 0.95192 0.96767 0.96813 1.69805 1.31532 1.28730 1.22044 0.86480 0.77910 0.83922 0.79345 1.19814 1.20914 1.20937 0.90277 0.90110 0.88805 0.92586 0.90289 0.91175 0.89314 0.91031 0.90250 0.86215 0.86245 0.86259 0.95312 0.88631 0.94387 0.94467 0.88596 0.95442 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 7.32 37.15 0.27 -2.17 16 2 C 0.14 1.90 3.71 -68.91 -0.26 1.65 16 3 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.52 7.20 7.09 -11.73 -0.08 7.12 16 5 O -0.54 -8.91 15.73 5.56 0.09 -8.82 16 6 N -0.61 -6.81 3.20 -182.77 -0.59 -7.40 16 7 C 0.08 0.68 10.19 59.85 0.61 1.29 16 8 C 0.10 0.90 6.57 -4.51 -0.03 0.88 16 9 C 0.10 1.04 6.54 -3.63 -0.02 1.01 16 10 N -1.01 -13.65 3.21 -107.71 -0.35 -13.99 16 11 S 2.59 45.35 3.93 -107.50 -0.42 44.93 16 12 O -0.95 -18.63 11.23 -57.54 -0.65 -19.28 16 13 O -0.96 -18.50 13.98 -57.54 -0.80 -19.31 16 14 C -0.58 -10.75 4.93 37.16 0.18 -10.56 16 15 C 0.08 1.91 0.52 -155.66 -0.08 1.83 16 16 C -0.16 -3.89 7.77 37.16 0.29 -3.60 16 17 C -0.16 -3.88 7.78 37.16 0.29 -3.59 16 18 C -0.50 -12.82 8.01 -34.44 -0.28 -13.09 16 19 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 20 C 0.06 1.69 5.15 -17.82 -0.09 1.59 16 21 N -0.88 -23.62 9.35 55.43 0.52 -23.10 16 22 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.08 1.19 5.23 -51.93 -0.27 0.92 16 27 H 0.08 1.07 8.02 -51.93 -0.42 0.66 16 28 H 0.09 1.54 6.80 -51.93 -0.35 1.19 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.78 7.23 -51.93 -0.38 0.40 16 31 H 0.07 0.41 7.81 -51.93 -0.41 0.00 16 32 H 0.09 0.50 7.84 -51.93 -0.41 0.09 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.12 1.22 6.70 -51.93 -0.35 0.87 16 36 H 0.12 2.00 8.14 -51.92 -0.42 1.57 16 37 H 0.12 2.00 7.13 -51.93 -0.37 1.63 16 38 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 39 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 43 H 0.03 0.61 5.46 -51.93 -0.28 0.33 16 44 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 339.97 15.07 5.12 5.12 Total: -1.00 -32.16 339.97 -7.94 -40.10 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.65 Total: 4.16 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 0.80 Total: -17.65 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -0.41 Total: -44.49 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -1.36 Total: -47.41 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 45.35 SS G_CDS: -0.42 Total: 44.93 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.16 -7.94 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451425575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.580 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds