Wall clock time and date at job start Tue Mar 31 2020 05:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.67635 * 2 1 4 4 C 1.53350 * 109.70375 * 239.48001 * 2 1 3 5 5 C 1.52919 * 108.67070 * 172.71976 * 4 2 1 6 6 N 1.45752 * 110.49163 * 50.75774 * 5 4 2 7 7 C 1.33188 * 124.05693 * 340.94774 * 6 5 4 8 8 O 1.21274 * 118.12013 * 182.18396 * 7 6 5 9 9 C 1.50184 * 123.63465 * 2.17544 * 7 6 5 10 10 H 1.08996 * 109.40039 * 222.38610 * 9 7 6 11 11 N 1.46495 * 109.39813 * 102.55107 * 9 7 6 12 12 S 1.65601 * 119.99861 * 94.83144 * 11 9 7 13 13 O 1.42096 * 104.27550 * 308.92761 * 12 11 9 14 14 O 1.42097 * 104.27967 * 181.06604 * 12 11 9 15 15 C 1.81409 * 104.44942 * 64.99646 * 12 11 9 16 16 C 1.52999 * 109.46814 * 180.02562 * 15 12 11 17 17 C 1.52997 * 109.47317 * 60.00042 * 16 15 12 18 18 C 1.52997 * 109.47269 * 299.99698 * 16 15 12 19 19 C 1.50706 * 109.46573 * 179.97438 * 16 15 12 20 20 H 1.07995 * 120.00167 * 359.72054 * 19 16 15 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47474 * 90.00322 * 23 21 19 25 25 H 1.48507 * 109.46754 * 210.00056 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99887 * 23 21 19 27 27 H 1.09000 * 109.47301 * 299.50404 * 1 2 3 28 28 H 1.09004 * 109.47411 * 59.50119 * 1 2 3 29 29 H 1.09002 * 109.47440 * 179.49672 * 1 2 3 30 30 H 1.08992 * 109.60373 * 292.47763 * 4 2 1 31 31 H 1.09000 * 109.60113 * 52.80509 * 4 2 1 32 32 H 1.09003 * 109.29976 * 171.06661 * 5 4 2 33 33 H 1.09003 * 109.30342 * 290.44150 * 5 4 2 34 34 H 0.96990 * 117.95164 * 160.92087 * 6 5 4 35 35 H 0.97004 * 120.00070 * 274.82274 * 11 9 7 36 36 H 1.09000 * 109.47067 * 60.00006 * 15 12 11 37 37 H 1.09001 * 109.46593 * 300.00012 * 15 12 11 38 38 H 1.09001 * 109.46832 * 179.97438 * 17 16 15 39 39 H 1.09002 * 109.47153 * 299.99641 * 17 16 15 40 40 H 1.08996 * 109.46952 * 59.99813 * 17 16 15 41 41 H 1.09000 * 109.47140 * 300.00547 * 18 16 15 42 42 H 1.09001 * 109.47230 * 59.99691 * 18 16 15 43 43 H 1.09001 * 109.47375 * 180.02562 * 18 16 15 44 44 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8969 1.0263 0.0000 4 6 2.0470 -0.7332 -1.2437 5 6 3.5649 -0.5630 -1.3166 6 7 4.1799 -0.9185 -0.0438 7 6 3.5209 -0.9784 1.1120 8 8 4.1483 -1.2470 2.1145 9 6 2.0452 -0.7316 1.2420 10 1 1.8565 -0.1219 2.1256 11 7 1.3476 -2.0127 1.3766 12 16 0.9853 -2.6042 2.8803 13 8 2.2168 -2.5441 3.5866 14 8 0.3480 -3.8481 2.6235 15 6 -0.1988 -1.4113 3.5628 16 6 -0.6144 -1.8522 4.9677 17 6 0.6207 -1.9169 5.8682 18 6 -1.2667 -3.2343 4.8964 19 6 -1.5976 -0.8608 5.5348 20 1 -1.8927 0.0001 4.9534 21 6 -2.1164 -1.0502 6.7982 22 7 -1.7529 -2.0957 7.5084 23 14 -3.3357 0.1782 7.5009 24 1 -4.7165 -0.2342 7.1422 25 1 -3.1998 0.2200 8.9791 26 1 -3.0600 1.5253 6.9402 27 1 -0.3634 0.5061 0.8944 28 1 -0.3634 0.5216 -0.8855 29 1 -0.3634 -1.0276 -0.0090 30 1 1.8007 -1.7925 -1.1725 31 1 1.5858 -0.3097 -2.1359 32 1 3.9624 -1.2071 -2.1010 33 1 3.8002 0.4747 -1.5530 34 1 5.1276 -1.1246 -0.0387 35 1 1.0978 -2.5145 0.5849 36 1 -1.0786 -1.3649 2.9209 37 1 0.2661 -0.4267 3.6139 38 1 0.3245 -2.2306 6.8692 39 1 1.3322 -2.6337 5.4582 40 1 1.0853 -0.9322 5.9190 41 1 -2.1466 -3.1882 4.2548 42 1 -0.5553 -3.9511 4.4863 43 1 -1.5632 -3.5482 5.8973 44 1 -2.1177 -2.2287 8.3973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451506898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:05 Heat of formation + Delta-G solvation = -111.414710 kcal Electronic energy + Delta-G solvation = -26970.749432 eV Core-core repulsion = 23243.183353 eV Total energy + Delta-G solvation = -3727.566079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.64602 -37.15686 -36.44564 -36.23249 -35.34593 -35.13557 -32.37140 -31.63784 -29.26220 -27.42369 -26.60129 -25.66710 -25.20009 -23.86970 -21.63257 -19.80959 -19.50256 -18.75509 -17.53957 -17.05272 -16.64391 -16.18565 -15.86005 -15.39550 -15.17432 -14.74444 -14.69060 -14.52065 -13.90787 -13.51510 -13.14703 -13.05577 -12.87017 -12.68268 -12.46115 -12.18066 -11.99549 -11.76321 -11.53804 -11.29990 -11.18400 -11.07421 -11.03487 -10.97198 -10.88267 -10.64473 -10.51355 -10.31513 -10.22008 -10.02815 -9.60899 -9.51138 -9.17887 -9.13721 -8.64062 -8.37526 -6.00781 -4.12880 0.86991 2.53258 3.12958 3.27032 3.34125 3.34478 3.36185 4.19568 4.27091 4.33309 4.37384 4.43859 4.46706 4.86833 4.94833 4.95884 5.12205 5.18158 5.24613 5.35844 5.43137 5.52589 5.56309 5.67692 5.73328 5.79538 5.96966 6.08605 6.40440 6.66239 6.73808 6.84142 6.92924 6.97917 7.10980 7.21496 7.36478 7.54746 7.70350 8.02169 8.12907 8.21417 8.35849 8.85416 9.52335 11.00522 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021149 B = 0.004244 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.590837 B = 6595.498282 C = 6998.500444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.135 4.135 5 C 0.110 3.890 6 N -0.723 5.723 7 C 0.497 3.503 8 O -0.510 6.510 9 C 0.151 3.849 10 H 0.117 0.883 11 N -1.112 6.112 12 S 2.582 3.418 13 O -0.935 6.935 14 O -0.965 6.965 15 C -0.581 4.581 16 C 0.083 3.917 17 C -0.164 4.164 18 C -0.163 4.163 19 C -0.501 4.501 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.883 5.883 23 Si 0.895 3.105 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.411 0.589 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.029 0.971 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.027 0.973 43 H 0.095 0.905 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.406 5.202 -20.108 21.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.123 4.123 3 H 0.110 0.890 4 C -0.173 4.173 5 C -0.014 4.014 6 N -0.378 5.378 7 C 0.280 3.720 8 O -0.382 6.382 9 C 0.040 3.960 10 H 0.134 0.866 11 N -0.868 5.868 12 S 2.680 3.320 13 O -0.925 6.925 14 O -0.955 6.955 15 C -0.715 4.715 16 C 0.081 3.919 17 C -0.221 4.221 18 C -0.221 4.221 19 C -0.540 4.540 20 H 0.077 0.923 21 C -0.137 4.137 22 N -0.521 5.521 23 Si 0.723 3.277 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.245 0.755 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.113 0.887 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.113 0.887 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.911 4.314 -18.846 20.531 hybrid contribution -0.808 1.010 -0.238 1.315 sum 6.104 5.324 -19.083 20.731 Atomic orbital electron populations 1.21848 0.93253 1.03013 1.02725 1.21615 0.97641 0.99778 0.93242 0.89050 1.21976 0.94377 1.01992 0.98910 1.21358 0.93875 1.00740 0.85472 1.45485 1.13288 1.71403 1.07671 1.20614 0.90755 0.77548 0.83133 1.90912 1.67310 1.45108 1.34852 1.20697 0.87961 0.86045 1.01306 0.86561 1.56021 1.72529 1.31338 1.26946 1.06122 0.76685 0.76389 0.72832 1.93664 1.41413 1.86543 1.70839 1.93554 1.78183 1.40248 1.83519 1.30540 1.14466 1.15135 1.11328 1.17922 0.94647 0.94673 0.84702 1.22269 0.95666 0.99535 1.04666 1.22269 0.99315 0.96243 1.04261 1.20930 1.24643 1.08025 1.00448 0.92326 1.24939 0.96486 0.95522 0.96797 1.69807 1.43406 1.27573 1.11310 0.86545 0.81382 0.81472 0.78269 1.20687 1.21154 1.19978 0.91480 0.92007 0.91740 0.90746 0.89298 0.90668 0.91602 0.76673 0.75458 0.86292 0.86585 0.88739 0.95226 0.94439 0.94524 0.95435 0.88654 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.92 37.15 0.33 -0.83 16 2 C -0.10 -0.80 2.60 -90.40 -0.24 -1.03 16 3 H 0.09 0.60 8.13 -51.93 -0.42 0.18 16 4 C -0.13 -0.79 5.29 -26.59 -0.14 -0.93 16 5 C 0.11 0.62 7.17 -4.49 -0.03 0.59 16 6 N -0.72 -6.91 5.44 -61.43 -0.33 -7.25 16 7 C 0.50 6.95 7.27 -11.94 -0.09 6.87 16 8 O -0.51 -9.90 16.42 -9.01 -0.15 -10.05 16 9 C 0.15 1.84 2.38 -69.30 -0.16 1.68 16 10 H 0.12 1.46 7.14 -51.93 -0.37 1.09 16 11 N -1.11 -15.07 4.31 -6.07 -0.03 -15.10 16 12 S 2.58 49.22 4.41 -107.50 -0.47 48.75 16 13 O -0.93 -21.29 14.07 -64.04 -0.90 -22.19 16 14 O -0.96 -20.58 15.70 -57.54 -0.90 -21.48 16 15 C -0.58 -11.24 4.90 37.16 0.18 -11.06 16 16 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 17 C -0.16 -4.15 7.77 37.16 0.29 -3.86 16 18 C -0.16 -4.07 7.78 37.16 0.29 -3.78 16 19 C -0.50 -13.12 8.01 -34.44 -0.28 -13.40 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 22 N -0.88 -24.32 9.35 55.43 0.52 -23.80 16 23 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.51 7.05 -51.93 -0.37 0.15 16 30 H 0.07 0.48 6.86 -51.93 -0.36 0.12 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.40 3.48 8.80 -40.82 -0.36 3.12 16 35 H 0.41 4.53 7.05 -34.47 -0.24 4.29 16 36 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 37 H 0.12 2.02 7.44 -51.92 -0.39 1.63 16 38 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 39 H 0.03 0.72 5.46 -51.93 -0.28 0.44 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 43 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -36.03 345.03 -8.73 -44.76 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.62 Total: 7.70 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -0.02 Total: -22.18 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.16 Total: -46.15 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -1.95 Total: -53.72 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 49.22 SS G_CDS: -0.47 Total: 48.75 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.03 -8.73 -44.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451506898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.651 kcal (2) G-P(sol) polarization free energy of solvation -36.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds