Wall clock time and date at job start Tue Mar 31 2020 05:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.66940 * 2 1 4 4 C 1.53342 * 109.67484 * 120.49763 * 2 1 3 5 5 C 1.52920 * 108.67545 * 187.26732 * 4 2 1 6 6 N 1.45756 * 110.48687 * 309.24574 * 5 4 2 7 7 C 1.33356 * 124.10419 * 19.06983 * 6 5 4 8 8 O 1.21279 * 118.24560 * 177.78014 * 7 6 5 9 9 C 1.50176 * 123.51112 * 357.78400 * 7 6 5 10 10 H 1.08997 * 109.32955 * 137.66078 * 9 7 6 11 11 N 1.46490 * 109.39976 * 257.44776 * 9 7 6 12 12 S 1.65596 * 120.00144 * 265.42712 * 11 9 7 13 13 O 1.42104 * 104.27972 * 181.07355 * 12 11 9 14 14 O 1.42096 * 104.27792 * 308.92722 * 12 11 9 15 15 C 1.81402 * 104.45074 * 65.00183 * 12 11 9 16 16 C 1.53000 * 109.47030 * 180.02562 * 15 12 11 17 17 C 1.52994 * 109.47120 * 299.99772 * 16 15 12 18 18 C 1.53000 * 109.46931 * 59.99919 * 16 15 12 19 19 C 1.50701 * 109.46857 * 179.97438 * 16 15 12 20 20 H 1.07999 * 119.99702 * 359.97438 * 19 16 15 21 21 C 1.37878 * 119.99783 * 180.02562 * 19 16 15 22 22 N 1.31513 * 119.99958 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99702 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47342 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47222 * 119.99879 * 23 21 19 26 26 H 1.48505 * 109.47204 * 239.99711 * 23 21 19 27 27 H 1.08998 * 109.47367 * 299.50067 * 1 2 3 28 28 H 1.09001 * 109.47159 * 59.50401 * 1 2 3 29 29 H 1.09007 * 109.46708 * 179.50571 * 1 2 3 30 30 H 1.08997 * 109.60846 * 67.50975 * 4 2 1 31 31 H 1.08999 * 109.60398 * 307.02256 * 4 2 1 32 32 H 1.08998 * 109.30129 * 188.93850 * 5 4 2 33 33 H 1.08997 * 109.30643 * 69.55723 * 5 4 2 34 34 H 0.97004 * 117.94693 * 198.79106 * 6 5 4 35 35 H 0.97012 * 119.99983 * 85.42647 * 11 9 7 36 36 H 1.08997 * 109.46703 * 300.00030 * 15 12 11 37 37 H 1.09000 * 109.46925 * 59.99659 * 15 12 11 38 38 H 1.08999 * 109.47195 * 60.00524 * 17 16 15 39 39 H 1.08999 * 109.47205 * 179.97438 * 17 16 15 40 40 H 1.09005 * 109.47479 * 299.99944 * 17 16 15 41 41 H 1.08998 * 109.47441 * 60.00224 * 18 16 15 42 42 H 1.09008 * 109.46831 * 179.97438 * 18 16 15 43 43 H 1.08999 * 109.47489 * 299.99540 * 18 16 15 44 44 H 0.97003 * 119.99547 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0463 -0.7328 1.2441 5 6 3.5643 -0.5633 1.3175 6 7 4.1795 -0.9197 0.0451 7 6 3.5210 -0.9797 -1.1130 8 8 4.1474 -1.2483 -2.1161 9 6 2.0453 -0.7323 -1.2415 10 1 1.8572 -0.1230 -2.1254 11 7 1.3471 -2.0132 -1.3758 12 16 0.9889 -2.6072 -2.8794 13 8 0.3046 -3.8256 -2.6210 14 8 0.3397 -1.5278 -3.5371 15 6 2.6058 -2.9330 -3.6345 16 6 2.4067 -3.4916 -5.0449 17 6 1.6074 -4.7940 -4.9695 18 6 1.6433 -2.4730 -5.8938 19 6 3.7500 -3.7617 -5.6724 20 1 4.6550 -3.5551 -5.1206 21 6 3.8234 -4.2715 -6.9514 22 7 2.7212 -4.5225 -7.6235 23 14 5.4884 -4.6055 -7.7294 24 1 6.5641 -4.2403 -6.7729 25 1 5.5959 -6.0472 -8.0690 26 1 5.6291 -3.7941 -8.9652 27 1 -0.3634 0.5060 0.8944 28 1 -0.3633 0.5215 -0.8855 29 1 -0.3633 -1.0277 -0.0089 30 1 1.7996 -1.7921 1.1734 31 1 1.5872 -0.3068 2.1363 32 1 3.9611 -1.2073 2.1023 33 1 3.8000 0.4743 1.5536 34 1 5.1281 -1.1221 0.0397 35 1 1.0947 -2.5134 -0.5838 36 1 3.1750 -2.0051 -3.6886 37 1 3.1498 -3.6582 -3.0294 38 1 0.6358 -4.5983 -4.5158 39 1 1.4652 -5.1917 -5.9743 40 1 2.1513 -5.5197 -4.3647 41 1 2.2127 -1.5452 -5.9476 42 1 1.5018 -2.8709 -6.8988 43 1 0.6717 -2.2773 -5.4401 44 1 2.7729 -4.8815 -8.5231 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451506900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:07 Heat of formation + Delta-G solvation = -111.818161 kcal Electronic energy + Delta-G solvation = -27131.308970 eV Core-core repulsion = 23403.725397 eV Total energy + Delta-G solvation = -3727.583574 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.73222 -37.27619 -36.49614 -36.11998 -35.39659 -35.17921 -32.41440 -31.52198 -29.33072 -27.41510 -26.41940 -25.60581 -25.09634 -23.90645 -21.68775 -19.82756 -19.39708 -18.80473 -17.54105 -17.20834 -16.75069 -16.07703 -15.84744 -15.43772 -15.12302 -14.74450 -14.65998 -14.59348 -13.99187 -13.54527 -13.07234 -13.00342 -12.80441 -12.65893 -12.37384 -12.20082 -12.01473 -11.81751 -11.55915 -11.40107 -11.19340 -11.02154 -10.99422 -10.94269 -10.85149 -10.71255 -10.45102 -10.20502 -10.15871 -9.84997 -9.55664 -9.46886 -9.25303 -9.08037 -8.53687 -8.28936 -5.91673 -4.01502 0.92465 2.38023 3.03814 3.33123 3.36203 3.40873 3.46044 4.18819 4.25772 4.32068 4.36671 4.43798 4.49845 4.81022 4.93260 4.99955 5.13327 5.21251 5.33644 5.35291 5.40930 5.54735 5.55825 5.68513 5.90934 6.01201 6.03882 6.10131 6.53564 6.65543 6.87954 6.91240 6.95273 7.03020 7.14302 7.15240 7.44510 7.62462 7.81112 8.08326 8.10099 8.23899 8.47263 8.98219 9.62789 11.09933 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.004733 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.045689 B = 5914.961959 C = 6836.887059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.091 0.909 4 C -0.136 4.136 5 C 0.110 3.890 6 N -0.718 5.718 7 C 0.497 3.503 8 O -0.523 6.523 9 C 0.144 3.856 10 H 0.126 0.874 11 N -1.111 6.111 12 S 2.583 3.417 13 O -0.966 6.966 14 O -0.963 6.963 15 C -0.573 4.573 16 C 0.081 3.919 17 C -0.163 4.163 18 C -0.162 4.162 19 C -0.491 4.491 20 H 0.061 0.939 21 C 0.062 3.938 22 N -0.887 5.887 23 Si 0.895 3.105 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.284 1.284 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.400 0.600 35 H 0.412 0.588 36 H 0.144 0.856 37 H 0.113 0.887 38 H 0.025 0.975 39 H 0.094 0.906 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.094 0.906 43 H 0.026 0.974 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 9.672 20.592 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.109 0.891 4 C -0.174 4.174 5 C -0.015 4.015 6 N -0.372 5.372 7 C 0.280 3.720 8 O -0.397 6.397 9 C 0.033 3.967 10 H 0.144 0.856 11 N -0.868 5.868 12 S 2.682 3.318 13 O -0.957 6.957 14 O -0.953 6.953 15 C -0.708 4.708 16 C 0.079 3.921 17 C -0.221 4.221 18 C -0.220 4.220 19 C -0.531 4.531 20 H 0.079 0.921 21 C -0.139 4.139 22 N -0.526 5.526 23 Si 0.723 3.277 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.210 1.210 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.236 0.764 35 H 0.246 0.754 36 H 0.162 0.838 37 H 0.132 0.868 38 H 0.044 0.956 39 H 0.113 0.887 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.112 0.888 43 H 0.045 0.955 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.000 9.513 19.409 21.707 hybrid contribution 1.957 -0.521 0.177 2.032 sum -0.044 8.992 19.586 21.551 Atomic orbital electron populations 1.21797 0.93298 1.02939 1.02423 1.21537 0.97672 0.99670 0.92964 0.89078 1.21999 0.94348 1.02066 0.98954 1.21391 0.93881 1.00862 0.85360 1.45470 1.13400 1.70708 1.07587 1.20815 0.90937 0.77036 0.83207 1.90847 1.67841 1.46513 1.34545 1.20780 0.87216 0.86499 1.02235 0.85609 1.55955 1.73839 1.30231 1.26742 1.06059 0.79095 0.73948 0.72672 1.93546 1.72865 1.45915 1.83329 1.93529 1.73497 1.55094 1.73159 1.30617 1.17837 1.11898 1.10437 1.17938 0.97053 0.91898 0.85211 1.22278 0.96621 0.99083 1.04098 1.22262 0.96744 0.98287 1.04716 1.21019 0.90967 1.41992 0.99120 0.92120 1.24937 0.96524 0.95426 0.97025 1.69821 1.26268 1.44805 1.11702 0.86492 0.84295 0.77742 0.79200 1.19834 1.21093 1.21036 0.92194 0.91493 0.91948 0.90667 0.89279 0.90465 0.91477 0.76402 0.75429 0.83833 0.86826 0.95605 0.88705 0.94611 0.94429 0.88752 0.95530 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.94 37.16 0.33 -0.88 16 2 C -0.10 -0.78 2.61 -90.41 -0.24 -1.02 16 3 H 0.09 0.60 8.13 -51.93 -0.42 0.17 16 4 C -0.14 -0.77 5.29 -26.60 -0.14 -0.91 16 5 C 0.11 0.59 7.17 -4.48 -0.03 0.56 16 6 N -0.72 -6.46 5.45 -61.39 -0.33 -6.80 16 7 C 0.50 6.46 7.24 -11.87 -0.09 6.38 16 8 O -0.52 -9.22 14.23 5.56 0.08 -9.14 16 9 C 0.14 1.74 2.50 -69.30 -0.17 1.57 16 10 H 0.13 1.66 7.47 -51.93 -0.39 1.27 16 11 N -1.11 -15.20 4.29 -6.08 -0.03 -15.23 16 12 S 2.58 50.13 4.47 -107.50 -0.48 49.65 16 13 O -0.97 -20.87 15.70 -57.54 -0.90 -21.77 16 14 O -0.96 -20.56 15.01 -57.54 -0.86 -21.42 16 15 C -0.57 -12.56 3.97 37.16 0.15 -12.41 16 16 C 0.08 2.11 0.52 -155.66 -0.08 2.03 16 17 C -0.16 -4.23 7.78 37.15 0.29 -3.95 16 18 C -0.16 -4.22 7.77 37.16 0.29 -3.93 16 19 C -0.49 -13.79 8.01 -34.44 -0.28 -14.06 16 20 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 21 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 22 N -0.89 -25.21 9.35 55.43 0.52 -24.69 16 23 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.56 7.00 -51.93 -0.36 0.19 16 30 H 0.07 0.47 6.86 -51.93 -0.36 0.11 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.40 3.35 8.80 -40.82 -0.36 2.99 16 35 H 0.41 4.57 7.04 -34.47 -0.24 4.32 16 36 H 0.14 3.15 5.59 -51.93 -0.29 2.86 16 37 H 0.11 2.38 8.14 -51.92 -0.42 1.96 16 38 H 0.03 0.63 5.47 -51.93 -0.28 0.35 16 39 H 0.09 2.62 6.07 -51.93 -0.32 2.31 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.09 2.61 6.07 -51.92 -0.32 2.30 16 43 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -35.23 341.45 -8.49 -43.72 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -6.54 Total: 8.83 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -0.06 Total: -24.99 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.16 Total: -46.71 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -1.69 Total: -52.34 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 50.13 SS G_CDS: -0.48 Total: 49.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.23 -8.49 -43.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451506900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.099 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds