Wall clock time and date at job start Tue Mar 31 2020 05:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.69835 * 2 1 4 4 C 1.53342 * 109.68277 * 120.50018 * 2 1 3 5 5 C 1.52913 * 108.66416 * 187.27018 * 4 2 1 6 6 N 1.45751 * 110.49094 * 309.23743 * 5 4 2 7 7 C 1.33351 * 124.10756 * 19.08788 * 6 5 4 8 8 O 1.21280 * 118.24828 * 177.76149 * 7 6 5 9 9 C 1.50179 * 123.50555 * 357.78506 * 7 6 5 10 10 H 1.08998 * 109.40014 * 257.50743 * 9 7 6 11 11 N 1.46509 * 109.39799 * 137.68553 * 9 7 6 12 12 S 1.65597 * 119.99845 * 95.00043 * 11 9 7 13 13 O 1.42109 * 104.27636 * 308.92713 * 12 11 9 14 14 O 1.42095 * 104.27718 * 181.06937 * 12 11 9 15 15 C 1.81400 * 104.45043 * 64.99555 * 12 11 9 16 16 C 1.53006 * 109.47145 * 179.97438 * 15 12 11 17 17 C 1.52997 * 109.47164 * 300.00298 * 16 15 12 18 18 C 1.52999 * 109.46623 * 60.00198 * 16 15 12 19 19 C 1.50698 * 109.47184 * 179.97438 * 16 15 12 20 20 H 1.08005 * 119.99819 * 0.02562 * 19 16 15 21 21 C 1.37875 * 120.00046 * 179.97438 * 19 16 15 22 22 N 1.31518 * 119.99944 * 0.02562 * 21 19 16 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47046 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46873 * 120.00118 * 23 21 19 26 26 H 1.48497 * 109.47510 * 240.00153 * 23 21 19 27 27 H 1.08993 * 109.47609 * 180.51587 * 1 2 3 28 28 H 1.09000 * 109.47218 * 300.51344 * 1 2 3 29 29 H 1.08998 * 109.47410 * 60.51140 * 1 2 3 30 30 H 1.09004 * 109.62077 * 67.51051 * 4 2 1 31 31 H 1.08997 * 109.72877 * 307.10148 * 4 2 1 32 32 H 1.09002 * 109.30584 * 188.91685 * 5 4 2 33 33 H 1.09003 * 109.30004 * 69.54908 * 5 4 2 34 34 H 0.96999 * 117.94731 * 199.07371 * 6 5 4 35 35 H 0.96992 * 119.99895 * 274.99425 * 11 9 7 36 36 H 1.09001 * 109.46713 * 60.00077 * 15 12 11 37 37 H 1.08993 * 109.47294 * 299.99609 * 15 12 11 38 38 H 1.09000 * 109.47140 * 60.00051 * 17 16 15 39 39 H 1.09001 * 109.47230 * 179.97438 * 17 16 15 40 40 H 1.09001 * 109.47375 * 300.00034 * 17 16 15 41 41 H 1.09001 * 109.47362 * 60.00551 * 18 16 15 42 42 H 1.09002 * 109.46716 * 179.97438 * 18 16 15 43 43 H 1.09000 * 109.47486 * 299.99829 * 18 16 15 44 44 H 0.96997 * 119.99752 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0465 -0.7328 1.2440 5 6 3.5644 -0.5630 1.3170 6 7 4.1795 -0.9193 0.0446 7 6 3.5209 -0.9793 -1.1134 8 8 4.1473 -1.2476 -2.1167 9 6 2.0452 -0.7319 -1.2417 10 1 1.5256 -1.6849 -1.3405 11 7 1.7906 0.0867 -2.4298 12 16 1.3940 -0.6379 -3.8650 13 8 2.4022 -1.6220 -4.0511 14 8 1.2490 0.4435 -4.7753 15 6 -0.2105 -1.4225 -3.5479 16 6 -0.6898 -2.1337 -4.8150 17 6 -0.8351 -1.1152 -5.9474 18 6 0.3295 -3.2015 -5.2170 19 6 -2.0225 -2.7860 -4.5513 20 1 -2.4818 -2.7015 -3.5775 21 6 -2.6558 -3.4899 -5.5535 22 7 -2.0966 -3.5924 -6.7395 23 14 -4.3080 -4.2979 -5.2269 24 1 -4.7184 -4.0359 -3.8240 25 1 -5.3248 -3.7372 -6.1526 26 1 -4.1945 -5.7625 -5.4445 27 1 -0.3634 -1.0275 0.0093 28 1 -0.3633 0.5218 0.8853 29 1 -0.3634 0.5059 -0.8945 30 1 1.8000 -1.7923 1.1735 31 1 1.5877 -0.3094 2.1375 32 1 3.9617 -1.2066 2.1020 33 1 3.7999 0.4748 1.5529 34 1 5.1273 -1.1256 0.0397 35 1 1.8542 1.0530 -2.3757 36 1 -0.9367 -0.6617 -3.2618 37 1 -0.1071 -2.1478 -2.7409 38 1 0.1290 -0.6438 -6.1380 39 1 -1.1762 -1.6219 -6.8503 40 1 -1.5612 -0.3544 -5.6610 41 1 0.4330 -3.9271 -4.4102 42 1 -0.0122 -3.7084 -6.1194 43 1 1.2936 -2.7301 -5.4076 44 1 -2.5421 -4.0879 -7.4444 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451506901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:09 Heat of formation + Delta-G solvation = -113.008848 kcal Electronic energy + Delta-G solvation = -26902.588767 eV Core-core repulsion = 23174.953561 eV Total energy + Delta-G solvation = -3727.635206 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56370 -37.00328 -36.38969 -36.22546 -35.45262 -35.08491 -32.51255 -31.63952 -29.18452 -27.31969 -26.57940 -25.66761 -25.20462 -23.62930 -21.76866 -19.94538 -19.40683 -18.72437 -17.44951 -17.13469 -16.60821 -16.34607 -15.90355 -15.12279 -15.01846 -14.76208 -14.61659 -14.40702 -14.07078 -13.53336 -13.20140 -13.03645 -12.94103 -12.50209 -12.46423 -12.08097 -12.01298 -11.86838 -11.52374 -11.25604 -11.17524 -11.12787 -11.04118 -10.95523 -10.86647 -10.63741 -10.42089 -10.29163 -10.20763 -10.01750 -9.61242 -9.49686 -9.17142 -9.11748 -8.63037 -8.38264 -6.01310 -4.13391 0.91845 2.60906 3.10647 3.25586 3.31349 3.33983 3.35976 4.20164 4.29031 4.34868 4.38474 4.44768 4.51680 4.87448 4.93586 4.97006 5.07812 5.21648 5.24111 5.37420 5.41705 5.50826 5.56282 5.69766 5.71662 5.84367 5.98226 6.07313 6.40701 6.67745 6.73684 6.84251 6.95620 7.00516 7.11489 7.23189 7.35921 7.54552 7.70006 8.01887 8.12891 8.23700 8.35595 8.85190 9.51884 11.00004 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.004387 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.603262 B = 6380.672662 C = 7030.001019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 H 0.086 0.914 4 C -0.133 4.133 5 C 0.110 3.890 6 N -0.726 5.726 7 C 0.493 3.507 8 O -0.505 6.505 9 C 0.151 3.849 10 H 0.115 0.885 11 N -1.109 6.109 12 S 2.586 3.414 13 O -0.934 6.934 14 O -0.965 6.965 15 C -0.585 4.585 16 C 0.083 3.917 17 C -0.163 4.163 18 C -0.164 4.164 19 C -0.500 4.500 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.883 5.883 23 Si 0.895 3.105 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.413 0.587 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.028 0.972 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.094 0.906 43 H 0.029 0.971 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 7.475 18.961 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.120 4.120 3 H 0.104 0.896 4 C -0.172 4.172 5 C -0.015 4.015 6 N -0.382 5.382 7 C 0.275 3.725 8 O -0.377 6.377 9 C 0.039 3.961 10 H 0.132 0.868 11 N -0.864 5.864 12 S 2.683 3.317 13 O -0.923 6.923 14 O -0.955 6.955 15 C -0.718 4.718 16 C 0.080 3.920 17 C -0.221 4.221 18 C -0.221 4.221 19 C -0.540 4.540 20 H 0.077 0.923 21 C -0.138 4.138 22 N -0.521 5.521 23 Si 0.723 3.277 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.233 0.767 35 H 0.246 0.754 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.046 0.954 39 H 0.113 0.887 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.113 0.887 43 H 0.048 0.952 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.604 7.139 17.410 20.295 hybrid contribution -1.066 -0.229 0.851 1.384 sum 6.538 6.910 18.261 20.590 Atomic orbital electron populations 1.21890 0.93253 1.03088 1.02793 1.21586 0.97513 1.00154 0.92714 0.89605 1.21985 0.94318 1.02241 0.98633 1.21363 0.93887 1.00710 0.85503 1.45566 1.13298 1.71692 1.07619 1.20752 0.91032 0.77505 0.83175 1.90921 1.67284 1.45028 1.34508 1.20569 0.92056 0.96422 0.87011 0.86750 1.55887 1.86647 1.17339 1.26512 1.06007 0.78073 0.75132 0.72476 1.93645 1.54651 1.61119 1.82905 1.93549 1.87999 1.54271 1.59703 1.30585 1.19032 1.11635 1.10532 1.17919 0.96008 0.91890 0.86135 1.22268 0.98934 0.97909 1.03004 1.22271 0.95957 1.00083 1.03834 1.20971 1.02654 1.32526 0.97828 0.92291 1.24943 0.97681 0.96068 0.95083 1.69820 1.38213 1.41428 1.02618 0.86495 0.83821 0.79155 0.78238 1.19880 1.20979 1.20978 0.91739 0.91887 0.91512 0.90328 0.89119 0.90531 0.91792 0.76691 0.75448 0.86343 0.86785 0.95368 0.88667 0.94519 0.94552 0.88723 0.95174 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.13 37.16 0.34 -0.85 16 2 C -0.10 -0.78 2.36 -90.41 -0.21 -1.00 16 3 H 0.09 0.60 8.12 -51.93 -0.42 0.18 16 4 C -0.13 -0.75 5.32 -26.60 -0.14 -0.89 16 5 C 0.11 0.61 7.17 -4.49 -0.03 0.58 16 6 N -0.73 -6.86 5.45 -61.39 -0.33 -7.20 16 7 C 0.49 6.90 7.44 -11.87 -0.09 6.81 16 8 O -0.51 -9.84 15.62 -13.71 -0.21 -10.06 16 9 C 0.15 1.86 2.17 -69.30 -0.15 1.71 16 10 H 0.11 1.39 7.10 -51.93 -0.37 1.02 16 11 N -1.11 -15.81 4.87 -6.07 -0.03 -15.84 16 12 S 2.59 50.51 4.41 -107.50 -0.47 50.03 16 13 O -0.93 -21.52 13.57 -65.45 -0.89 -22.41 16 14 O -0.96 -21.22 15.70 -57.54 -0.90 -22.13 16 15 C -0.58 -11.37 4.90 37.16 0.18 -11.18 16 16 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 17 C -0.16 -4.10 7.78 37.16 0.29 -3.81 16 18 C -0.16 -4.13 7.77 37.16 0.29 -3.84 16 19 C -0.50 -13.08 8.01 -34.44 -0.28 -13.36 16 20 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 21 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 22 N -0.88 -24.28 9.35 55.43 0.52 -23.76 16 23 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.58 7.97 -51.93 -0.41 0.16 16 30 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.40 3.43 8.80 -40.82 -0.36 3.07 16 35 H 0.41 4.89 8.79 -34.47 -0.30 4.59 16 36 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 37 H 0.11 1.96 7.44 -51.93 -0.39 1.58 16 38 H 0.03 0.68 5.46 -51.93 -0.28 0.40 16 39 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 43 H 0.03 0.74 5.46 -51.93 -0.28 0.45 16 44 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 348.14 15.07 5.25 5.25 Total: -1.00 -36.22 348.14 -8.87 -45.09 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.80 Total: 7.75 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 0.03 Total: -22.29 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.15 Total: -46.80 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -2.01 Total: -54.59 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 50.51 SS G_CDS: -0.47 Total: 50.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.22 -8.87 -45.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451506901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.916 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds