Wall clock time and date at job start Tue Mar 31 2020 05:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.66948 * 2 1 4 4 C 1.53339 * 109.67294 * 239.50242 * 2 1 3 5 5 C 1.52930 * 108.67360 * 172.70034 * 4 2 1 6 6 N 1.45753 * 110.48443 * 50.74614 * 5 4 2 7 7 C 1.33346 * 124.11024 * 340.95170 * 6 5 4 8 8 O 1.21283 * 118.24597 * 181.91185 * 7 6 5 9 9 C 1.50177 * 123.50932 * 2.19659 * 7 6 5 10 10 H 1.09006 * 109.39740 * 102.55178 * 9 7 6 11 11 N 1.46498 * 109.40029 * 222.28727 * 9 7 6 12 12 S 1.65599 * 120.00479 * 264.99706 * 11 9 7 13 13 O 1.42102 * 104.27586 * 181.07343 * 12 11 9 14 14 O 1.42095 * 104.27793 * 308.93386 * 12 11 9 15 15 C 1.81401 * 104.44730 * 65.00306 * 12 11 9 16 16 C 1.53000 * 109.47306 * 179.97438 * 15 12 11 17 17 C 1.52992 * 109.47214 * 300.00131 * 16 15 12 18 18 C 1.52998 * 109.46819 * 60.00091 * 16 15 12 19 19 C 1.50700 * 109.47243 * 179.97438 * 16 15 12 20 20 H 1.08001 * 119.99771 * 0.83681 * 19 16 15 21 21 C 1.37879 * 120.00127 * 180.83790 * 19 16 15 22 22 N 1.31509 * 120.00080 * 194.57698 * 21 19 16 23 23 Si 1.86797 * 119.99568 * 14.58113 * 21 19 16 24 24 H 1.48498 * 109.47384 * 84.45530 * 23 21 19 25 25 H 1.48506 * 109.46995 * 204.45337 * 23 21 19 26 26 H 1.48500 * 109.47431 * 324.44911 * 23 21 19 27 27 H 1.09000 * 109.47219 * 180.49733 * 1 2 3 28 28 H 1.08997 * 109.47534 * 300.49849 * 1 2 3 29 29 H 1.09004 * 109.47170 * 60.50263 * 1 2 3 30 30 H 1.08995 * 109.60778 * 52.94347 * 4 2 1 31 31 H 1.09000 * 109.60455 * 292.44937 * 4 2 1 32 32 H 1.08998 * 109.29766 * 290.43909 * 5 4 2 33 33 H 1.08995 * 109.29761 * 171.06118 * 5 4 2 34 34 H 0.97008 * 117.94156 * 160.92388 * 6 5 4 35 35 H 0.97001 * 119.99620 * 85.00100 * 11 9 7 36 36 H 1.08999 * 109.47278 * 300.00676 * 15 12 11 37 37 H 1.09005 * 109.47117 * 59.99707 * 15 12 11 38 38 H 1.09006 * 109.47405 * 70.23144 * 17 16 15 39 39 H 1.08998 * 109.47605 * 190.23128 * 17 16 15 40 40 H 1.09007 * 109.47488 * 310.23214 * 17 16 15 41 41 H 1.09003 * 109.47370 * 60.00152 * 18 16 15 42 42 H 1.08993 * 109.47339 * 180.02562 * 18 16 15 43 43 H 1.09005 * 109.47190 * 300.00045 * 18 16 15 44 44 H 0.96994 * 120.00038 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0462 -0.7328 -1.2441 5 6 3.5642 -0.5626 -1.3180 6 7 4.1799 -0.9183 -0.0456 7 6 3.5217 -0.9786 1.1126 8 8 4.1475 -1.2522 2.1148 9 6 2.0460 -0.7320 1.2414 10 1 1.5270 -1.6854 1.3414 11 7 1.7911 0.0857 2.4299 12 16 1.3952 -0.6397 3.8649 13 8 1.2000 0.4439 4.7632 14 8 0.3278 -1.5165 3.5316 15 6 2.8763 -1.5837 4.3186 16 6 2.6335 -2.3077 5.6444 17 6 2.3280 -1.2817 6.7373 18 6 1.4467 -3.2617 5.4944 19 6 3.8637 -3.0924 6.0209 20 1 4.7367 -3.0655 5.3857 21 6 3.8747 -3.8447 7.1764 22 7 5.0131 -4.2933 7.6582 23 14 2.2723 -4.2269 8.0572 24 1 1.6413 -5.4215 7.4409 25 1 2.5480 -4.4970 9.4912 26 1 1.3539 -3.0659 7.9400 27 1 -0.3633 -1.0276 0.0089 28 1 -0.3634 0.5215 0.8854 29 1 -0.3634 0.5060 -0.8945 30 1 1.5868 -0.3073 -2.1362 31 1 1.8001 -1.7922 -1.1730 32 1 3.7993 0.4751 -1.5543 33 1 3.9611 -1.2065 -2.1028 34 1 5.1278 -1.1243 -0.0411 35 1 1.8543 1.0522 2.3762 36 1 3.0943 -2.3143 3.5397 37 1 3.7217 -0.9040 4.4258 38 1 1.3465 -0.8422 6.5591 39 1 2.3345 -1.7738 7.7098 40 1 3.0853 -0.4978 6.7218 41 1 1.6643 -3.9928 4.7157 42 1 1.2734 -3.7772 6.4390 43 1 0.5567 -2.6945 5.2218 44 1 5.0209 -4.8222 8.4712 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451506902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:11 Heat of formation + Delta-G solvation = -93.413763 kcal Electronic energy + Delta-G solvation = -27125.661104 eV Core-core repulsion = 23398.875605 eV Total energy + Delta-G solvation = -3726.785499 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69990 -37.17226 -36.63105 -36.53644 -35.57708 -35.34225 -32.61549 -31.80529 -29.30578 -27.36660 -27.15520 -26.26232 -24.88261 -23.70734 -21.86915 -20.03341 -19.62141 -18.80059 -17.67318 -17.31105 -16.74322 -16.37431 -16.02052 -15.46278 -15.27293 -14.97269 -14.66986 -14.52393 -14.21581 -13.60533 -13.23368 -13.15335 -13.01535 -12.75136 -12.55219 -12.40124 -12.30540 -12.10530 -11.88748 -11.54644 -11.52174 -11.39023 -11.19077 -11.10313 -10.94312 -10.87080 -10.62300 -10.44060 -10.04159 -9.94735 -9.73378 -9.26946 -9.25995 -8.86613 -8.60873 -8.34494 -6.06536 -4.01988 0.82252 2.42888 2.94996 3.20721 3.33466 3.42720 3.46098 4.14092 4.20010 4.27548 4.31212 4.39870 4.44907 4.71196 4.90190 4.91932 5.01977 5.17679 5.22881 5.32681 5.36254 5.45757 5.52258 5.63160 5.69874 5.86811 5.92884 6.02831 6.15281 6.41066 6.48104 6.55274 6.59875 6.68296 6.78710 6.91481 7.04096 7.12151 7.29811 7.45021 7.76431 8.08909 8.55595 9.00901 9.57933 11.06372 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020673 B = 0.004776 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.119560 B = 5860.770596 C = 6579.132476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.085 0.915 4 C -0.134 4.134 5 C 0.108 3.892 6 N -0.719 5.719 7 C 0.492 3.508 8 O -0.521 6.521 9 C 0.144 3.856 10 H 0.125 0.875 11 N -1.106 6.106 12 S 2.581 3.419 13 O -0.965 6.965 14 O -0.968 6.968 15 C -0.546 4.546 16 C 0.050 3.950 17 C -0.169 4.169 18 C -0.180 4.180 19 C -0.498 4.498 20 H 0.080 0.920 21 C 0.075 3.925 22 N -0.892 5.892 23 Si 0.873 3.127 24 H -0.282 1.282 25 H -0.302 1.302 26 H -0.247 1.247 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.401 0.599 35 H 0.414 0.586 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.035 0.965 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 9.557 -21.694 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 H 0.104 0.896 4 C -0.172 4.172 5 C -0.016 4.016 6 N -0.374 5.374 7 C 0.276 3.724 8 O -0.396 6.396 9 C 0.032 3.968 10 H 0.143 0.857 11 N -0.861 5.861 12 S 2.680 3.320 13 O -0.956 6.956 14 O -0.958 6.958 15 C -0.681 4.681 16 C 0.047 3.953 17 C -0.227 4.227 18 C -0.237 4.237 19 C -0.537 4.537 20 H 0.098 0.902 21 C -0.128 4.128 22 N -0.529 5.529 23 Si 0.705 3.295 24 H -0.210 1.210 25 H -0.231 1.231 26 H -0.172 1.172 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.237 0.763 35 H 0.248 0.752 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.897 9.293 -20.576 23.607 hybrid contribution 0.401 -0.203 0.184 0.486 sum -6.496 9.091 -20.392 23.252 Atomic orbital electron populations 1.21830 0.93296 1.03063 1.02374 1.21517 0.97547 1.00014 0.92508 0.89647 1.22002 0.94317 1.02266 0.98613 1.21403 0.93840 1.00915 0.85462 1.45516 1.13514 1.70804 1.07525 1.20892 0.91095 0.77087 0.83368 1.90933 1.67892 1.46435 1.34304 1.20682 0.91527 0.97367 0.87223 0.85742 1.55703 1.88252 1.17264 1.24866 1.06010 0.78307 0.75353 0.72290 1.93560 1.86425 1.53371 1.62222 1.93527 1.52368 1.67338 1.82545 1.30322 1.16736 1.12877 1.08130 1.18310 0.96231 0.92744 0.88063 1.22677 0.99327 0.99345 1.01332 1.22812 0.97949 1.01280 1.01618 1.20691 0.97696 1.27509 1.07804 0.90221 1.24970 0.95875 0.95652 0.96259 1.69946 1.25066 1.36322 1.21580 0.87462 0.85104 0.79438 0.77492 1.20962 1.23069 1.17238 0.91769 0.91758 0.92082 0.89080 0.90264 0.91594 0.90319 0.76277 0.75235 0.84785 0.85110 0.94659 0.91592 0.92384 0.91909 0.93171 0.93366 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.12 37.16 0.34 -0.79 16 2 C -0.10 -0.71 2.36 -90.41 -0.21 -0.92 16 3 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 4 C -0.13 -0.68 5.32 -26.59 -0.14 -0.82 16 5 C 0.11 0.54 7.17 -4.48 -0.03 0.50 16 6 N -0.72 -6.22 5.45 -61.39 -0.33 -6.55 16 7 C 0.49 6.15 7.44 -11.87 -0.09 6.06 16 8 O -0.52 -8.86 13.09 5.55 0.07 -8.79 16 9 C 0.14 1.64 2.29 -69.30 -0.16 1.48 16 10 H 0.13 1.48 7.43 -51.93 -0.39 1.09 16 11 N -1.11 -14.72 4.92 -6.07 -0.03 -14.75 16 12 S 2.58 47.48 4.48 -107.50 -0.48 47.00 16 13 O -0.97 -19.87 15.92 -57.54 -0.92 -20.78 16 14 O -0.97 -19.11 15.01 -57.54 -0.86 -19.97 16 15 C -0.55 -11.46 3.19 37.16 0.12 -11.35 16 16 C 0.05 1.22 0.52 -155.67 -0.08 1.14 16 17 C -0.17 -4.08 6.95 37.15 0.26 -3.82 16 18 C -0.18 -4.26 7.22 37.16 0.27 -3.99 16 19 C -0.50 -14.29 8.62 -34.44 -0.30 -14.58 16 20 H 0.08 2.47 7.99 -52.49 -0.42 2.05 16 21 C 0.07 2.20 5.31 -17.82 -0.09 2.10 16 22 N -0.89 -27.66 13.96 55.43 0.77 -26.89 16 23 Si 0.87 22.43 22.79 -169.99 -3.87 18.56 16 24 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 26 H -0.25 -5.95 4.67 56.52 0.26 -5.69 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.58 7.99 -51.93 -0.42 0.16 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.40 3.27 8.80 -40.82 -0.36 2.91 16 35 H 0.41 4.53 8.79 -34.47 -0.30 4.23 16 36 H 0.13 2.76 6.42 -51.92 -0.33 2.43 16 37 H 0.13 2.74 7.65 -51.92 -0.40 2.35 16 38 H 0.03 0.79 6.21 -51.93 -0.32 0.47 16 39 H 0.07 1.62 4.32 -51.93 -0.22 1.39 16 40 H 0.06 1.33 8.11 -51.93 -0.42 0.91 16 41 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.05 1.22 2.28 -51.93 -0.12 1.10 16 43 H 0.05 1.06 5.47 -51.93 -0.28 0.78 16 44 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -36.66 334.85 -7.36 -44.02 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.64 Total: 8.09 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -0.12 Total: -24.99 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.41 Total: -48.19 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -1.71 Total: -49.54 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -3.87 Total: 18.56 kcal Atomic # 16 Polarization: 47.48 SS G_CDS: -0.48 Total: 47.00 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.66 -7.36 -44.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451506902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.393 kcal (2) G-P(sol) polarization free energy of solvation -36.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds