Wall clock time and date at job start Tue Mar 31 2020 05:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.70862 * 2 1 4 4 C 1.53298 * 109.68154 * 120.53621 * 2 1 3 5 5 O 1.42961 * 109.26145 * 171.99931 * 4 2 1 6 6 C 1.42955 * 114.17201 * 297.50118 * 5 4 2 7 7 C 1.53291 * 109.26384 * 62.49990 * 6 5 4 8 8 N 1.47147 * 109.67981 * 239.46325 * 2 1 3 9 9 C 1.34776 * 120.98723 * 9.76081 * 8 2 1 10 10 O 1.21359 * 119.99516 * 6.72043 * 9 8 2 11 11 C 1.49345 * 120.00400 * 186.71454 * 9 8 2 12 12 O 1.21378 * 120.00295 * 7.15973 * 11 9 8 13 13 N 1.34779 * 120.00009 * 187.16302 * 11 9 8 14 14 C 1.39742 * 120.00220 * 175.13181 * 13 11 9 15 15 C 1.39339 * 119.95505 * 152.04259 * 14 13 11 16 16 C 1.38470 * 120.42526 * 180.02562 * 15 14 13 17 17 C 1.37696 * 120.32672 * 0.02562 * 16 15 14 18 18 C 1.40751 * 119.89706 * 359.97438 * 17 16 15 19 19 C 1.41412 * 120.20481 * 180.02562 * 18 17 16 20 20 H 1.07990 * 120.00336 * 33.81502 * 19 18 17 21 21 C 1.39931 * 119.99331 * 213.81405 * 19 18 17 22 22 N 1.30823 * 120.00790 * 5.92078 * 21 19 18 23 23 Si 1.86800 * 119.99628 * 185.92018 * 21 19 18 24 24 H 1.48502 * 109.47316 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47310 * 120.00088 * 23 21 19 26 26 H 1.48506 * 109.47535 * 239.99995 * 23 21 19 27 27 C 1.38306 * 119.95015 * 331.77024 * 14 13 11 28 28 H 1.09009 * 109.46977 * 291.96557 * 1 2 3 29 29 H 1.08994 * 109.47173 * 51.96396 * 1 2 3 30 30 H 1.09003 * 109.46825 * 171.97239 * 1 2 3 31 31 H 1.09000 * 109.51503 * 291.94999 * 4 2 1 32 32 H 1.08998 * 109.51113 * 52.05327 * 4 2 1 33 33 H 1.09007 * 109.47390 * 302.57430 * 6 5 4 34 34 H 1.09001 * 109.51329 * 182.45227 * 6 5 4 35 35 H 1.09005 * 109.68303 * 188.00327 * 7 6 5 36 36 H 1.08998 * 109.71485 * 67.46730 * 7 6 5 37 37 H 0.97000 * 120.00202 * 355.12223 * 13 11 9 38 38 H 1.08003 * 119.78991 * 359.97438 * 15 14 13 39 39 H 1.08003 * 119.83833 * 180.02562 * 16 15 14 40 40 H 1.08003 * 120.05282 * 179.97438 * 17 16 15 41 41 H 0.96995 * 120.00825 * 179.97438 * 22 21 19 42 42 H 1.07999 * 120.16292 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0463 -0.7334 1.2432 5 8 3.4635 -0.8921 1.1426 6 6 3.8860 -1.6895 0.0338 7 6 3.4639 -1.0051 -1.2713 8 7 2.0256 -0.7040 -1.1934 9 6 1.1871 -1.0621 -2.1859 10 8 0.0292 -0.6993 -2.1624 11 6 1.6828 -1.9051 -3.3146 12 8 2.8009 -2.3758 -3.2751 13 7 0.8886 -2.1432 -4.3772 14 6 1.3862 -2.8457 -5.4780 15 6 0.5210 -3.5903 -6.2771 16 6 1.0036 -4.2906 -7.3698 17 6 2.3452 -4.2591 -7.6785 18 6 3.2313 -3.5114 -6.8806 19 6 4.6102 -3.4740 -7.1920 20 1 4.9323 -3.5090 -8.2221 21 6 5.5572 -3.3917 -6.1651 22 7 5.1759 -3.4659 -4.9159 23 14 7.3662 -3.1757 -6.5782 24 1 7.5340 -3.1196 -8.0526 25 1 7.8643 -1.9132 -5.9754 26 1 8.1383 -4.3220 -6.0349 27 6 2.7359 -2.7964 -5.7759 28 1 -0.3633 0.3844 0.9531 29 1 -0.3633 0.6332 -0.8094 30 1 -0.3633 -1.0176 -0.1435 31 1 1.8073 -0.1525 2.1341 32 1 1.5741 -1.7135 1.3101 33 1 3.4211 -2.6735 0.0958 34 1 4.9705 -1.7965 0.0546 35 1 3.6544 -1.6707 -2.1132 36 1 4.0261 -0.0802 -1.4000 37 1 -0.0284 -1.8270 -4.3779 38 1 -0.5327 -3.6222 -6.0422 39 1 0.3245 -4.8644 -7.9830 40 1 2.7169 -4.8073 -8.5316 41 1 5.8324 -3.4092 -4.2042 42 1 3.4067 -2.2158 -5.1601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453628513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:40 Heat of formation + Delta-G solvation = -50.529961 kcal Electronic energy + Delta-G solvation = -27388.935675 eV Core-core repulsion = 23528.565806 eV Total energy + Delta-G solvation = -3860.369869 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.07440 -39.37751 -38.18563 -37.19097 -35.22678 -34.25377 -33.19323 -32.80047 -29.61699 -29.06008 -28.41141 -26.52506 -25.32953 -24.67224 -23.04988 -22.03481 -21.15303 -20.19266 -19.36285 -17.92774 -17.17508 -16.77346 -16.34985 -16.04650 -15.65221 -15.32035 -15.08425 -15.01267 -14.86470 -14.71630 -14.40880 -13.77403 -13.29555 -12.98813 -12.85997 -12.80401 -12.64710 -12.26030 -12.10527 -11.82652 -11.68653 -11.32278 -11.28505 -11.12818 -10.96274 -10.85232 -10.56635 -10.31909 -10.28665 -9.82132 -9.77644 -9.33334 -9.14218 -8.63103 -8.42292 -7.34519 -7.02922 -6.55035 -4.36188 1.57539 2.42623 2.73862 2.93499 3.11669 3.15809 3.17393 3.58690 3.62958 3.77982 3.99820 4.52863 4.64092 4.70937 4.82192 4.92680 5.02859 5.15853 5.30441 5.41235 5.49961 5.61411 5.67873 5.78889 5.96655 6.03637 6.09579 6.14120 6.34878 6.42546 6.65296 6.80966 6.88365 6.99089 7.10087 7.14023 7.26913 7.42685 7.69115 7.77990 7.83214 8.02289 8.13737 8.30550 8.44382 8.69189 8.92569 8.94199 10.33055 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.004660 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.189475 B = 6006.672120 C = 7838.359114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.105 3.895 3 H 0.082 0.918 4 C 0.053 3.947 5 O -0.385 6.385 6 C 0.052 3.948 7 C 0.014 3.986 8 N -0.583 5.583 9 C 0.514 3.486 10 O -0.522 6.522 11 C 0.486 3.514 12 O -0.454 6.454 13 N -0.632 5.632 14 C 0.131 3.869 15 C -0.254 4.254 16 C -0.083 4.083 17 C -0.227 4.227 18 C 0.121 3.879 19 C -0.469 4.469 20 H 0.077 0.923 21 C 0.072 3.928 22 N -0.777 5.777 23 Si 0.906 3.094 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.276 1.276 27 C -0.149 4.149 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.175 0.825 36 H 0.071 0.929 37 H 0.409 0.591 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.278 0.722 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 5.589 10.310 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.002 3.998 3 H 0.100 0.900 4 C -0.025 4.025 5 O -0.303 6.303 6 C -0.025 4.025 7 C -0.107 4.107 8 N -0.318 5.318 9 C 0.298 3.702 10 O -0.399 6.399 11 C 0.267 3.733 12 O -0.328 6.328 13 N -0.276 5.276 14 C 0.039 3.961 15 C -0.276 4.276 16 C -0.102 4.102 17 C -0.247 4.247 18 C 0.118 3.882 19 C -0.499 4.499 20 H 0.095 0.905 21 C -0.147 4.147 22 N -0.402 5.402 23 Si 0.731 3.269 24 H -0.187 1.187 25 H -0.200 1.200 26 H -0.201 1.201 27 C -0.170 4.170 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.191 0.809 36 H 0.089 0.911 37 H 0.244 0.756 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.068 5.557 10.764 12.778 hybrid contribution 0.224 0.110 -0.128 0.281 sum -3.844 5.667 10.636 12.650 Atomic orbital electron populations 1.22143 0.91922 1.04130 1.01687 1.22092 0.96592 0.96338 0.84777 0.89963 1.23045 0.82059 1.00160 0.97204 1.87933 1.21468 1.72354 1.48578 1.22996 1.01059 0.93570 0.84900 1.24032 0.78606 1.04145 1.03913 1.48016 1.09234 1.56294 1.18275 1.20303 0.85691 0.80822 0.83432 1.90745 1.17792 1.54352 1.76996 1.20151 0.86553 0.82992 0.83579 1.90521 1.17739 1.48053 1.76456 1.43085 1.15484 1.53813 1.15228 1.17698 0.94445 0.96465 0.87462 1.20050 0.97180 1.08456 1.01864 1.20323 0.95193 0.98453 0.96226 1.21148 0.93378 1.05790 1.04355 1.17506 0.93036 0.87686 0.89962 1.19509 0.90439 1.45844 0.94128 0.90528 1.25878 1.01080 0.92947 0.94753 1.69854 1.35906 1.34910 0.99527 0.86308 0.82388 0.78466 0.79774 1.18698 1.19975 1.20094 1.21561 0.91647 1.02677 1.01113 0.93042 0.89689 0.91664 0.87818 0.92634 0.92483 0.87427 0.80941 0.91090 0.75589 0.89009 0.88858 0.88742 0.91105 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 7.64 37.16 0.28 -1.33 16 2 C 0.10 1.25 3.68 -67.42 -0.25 1.00 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.05 0.57 6.28 37.31 0.23 0.81 16 5 O -0.38 -4.92 10.74 -35.23 -0.38 -5.29 16 6 C 0.05 0.66 6.98 37.31 0.26 0.92 16 7 C 0.01 0.20 6.50 -3.53 -0.02 0.17 16 8 N -0.58 -8.43 3.02 -165.29 -0.50 -8.93 16 9 C 0.51 8.40 7.51 -11.63 -0.09 8.32 16 10 O -0.52 -8.60 12.31 5.49 0.07 -8.54 16 11 C 0.49 9.15 7.55 -11.63 -0.09 9.07 16 12 O -0.45 -9.59 10.46 5.47 0.06 -9.53 16 13 N -0.63 -11.99 5.34 -10.34 -0.06 -12.05 16 14 C 0.13 2.95 6.37 -83.82 -0.53 2.41 16 15 C -0.25 -5.42 9.95 -39.09 -0.39 -5.80 16 16 C -0.08 -1.80 10.01 -39.69 -0.40 -2.19 16 17 C -0.23 -5.42 9.79 -38.83 -0.38 -5.80 16 18 C 0.12 3.16 5.50 -106.85 -0.59 2.58 16 19 C -0.47 -12.25 9.04 -37.74 -0.34 -12.59 16 20 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 21 C 0.07 1.78 5.31 -17.35 -0.09 1.68 16 22 N -0.78 -19.74 10.97 55.55 0.61 -19.13 16 23 Si 0.91 18.62 29.56 -169.99 -5.03 13.59 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 26 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 27 C -0.15 -3.77 7.26 -38.67 -0.28 -4.05 16 28 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.08 1.10 6.57 -51.93 -0.34 0.76 16 30 H 0.06 0.84 7.03 -51.93 -0.37 0.48 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.17 2.95 3.84 -56.45 -0.22 2.74 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.41 6.68 8.28 -40.82 -0.34 6.34 16 38 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 40 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 41 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 42 H 0.14 3.77 4.41 -52.49 -0.23 3.54 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -28.27 340.56 -8.03 -36.30 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.27 Total: 13.26 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.67 Total: -4.82 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.05 Total: -40.10 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.25 Total: -23.36 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.27 -8.03 -36.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453628513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.233 kcal (2) G-P(sol) polarization free energy of solvation -28.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds