Wall clock time and date at job start Tue Mar 31 2020 04:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47193 * 87.56058 * 3 2 1 5 5 C 1.37105 * 120.00003 * 98.05831 * 4 3 2 6 6 H 1.07996 * 120.00154 * 159.35755 * 5 4 3 7 7 C 1.38950 * 119.99802 * 339.36083 * 5 4 3 8 8 N 1.31406 * 120.00333 * 344.10636 * 7 5 4 9 9 Si 1.86804 * 119.99947 * 164.10644 * 7 5 4 10 10 H 1.48500 * 109.47190 * 89.99727 * 9 7 5 11 11 H 1.48504 * 109.46938 * 210.00062 * 9 7 5 12 12 H 1.48498 * 109.46882 * 329.99524 * 9 7 5 13 13 C 1.34776 * 120.00105 * 278.05972 * 4 3 2 14 14 O 1.21296 * 119.99653 * 179.97438 * 13 4 3 15 15 C 1.50695 * 119.99829 * 359.97438 * 13 4 3 16 16 N 1.46506 * 109.46912 * 180.02562 * 15 13 4 17 17 C 1.36046 * 123.27680 * 269.70491 * 16 15 13 18 18 O 1.21217 * 127.00328 * 12.68060 * 17 16 15 19 19 C 1.49484 * 106.07261 * 192.55940 * 17 16 15 20 20 H 1.09001 * 110.35609 * 85.35718 * 19 17 16 21 21 C 1.51317 * 119.52972 * 214.29618 * 19 17 16 22 22 C 1.54194 * 106.19078 * 178.50244 * 21 19 17 23 23 C 1.52470 * 111.88388 * 302.48422 * 22 21 19 24 24 C 1.53990 * 112.10677 * 53.05052 * 23 22 21 25 25 C 1.51017 * 106.70942 * 303.65512 * 24 23 22 26 26 H 1.09002 * 109.83055 * 306.24186 * 25 24 23 27 27 C 1.36054 * 123.28548 * 89.99982 * 16 15 13 28 28 O 1.21228 * 127.01451 * 12.69688 * 27 16 15 29 29 H 4.40640 * 5.51436 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46904 * 207.55849 * 3 2 1 31 31 H 1.08998 * 109.47381 * 327.55935 * 3 2 1 32 32 H 0.97003 * 120.00812 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47181 * 299.99897 * 15 13 4 34 34 H 1.08997 * 109.47367 * 60.00205 * 15 13 4 35 35 H 1.08996 * 110.10772 * 59.33132 * 21 19 17 36 36 H 1.09001 * 110.10263 * 297.66791 * 21 19 17 37 37 H 1.09000 * 108.99358 * 181.86566 * 22 21 19 38 38 H 1.08999 * 108.99478 * 63.10558 * 22 21 19 39 39 H 1.08999 * 108.95832 * 292.37528 * 23 22 21 40 40 H 1.09005 * 108.95537 * 173.72752 * 23 22 21 41 41 H 1.08995 * 110.00384 * 184.35112 * 24 23 22 42 42 H 1.09008 * 109.99837 * 62.95283 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1343 -0.0579 -1.3800 5 6 3.5192 1.0917 -2.0203 6 1 4.1737 1.0390 -2.8778 7 6 3.0673 2.3246 -1.5660 8 7 2.0456 2.3870 -0.7420 9 14 3.9124 3.8935 -2.1264 10 1 3.2620 4.3906 -3.3654 11 1 3.8015 4.9229 -1.0618 12 1 5.3454 3.6141 -2.3974 13 6 3.2052 -1.2419 -2.0201 14 8 3.6091 -1.2902 -3.1628 15 6 2.7826 -2.5055 -1.3161 16 7 2.9538 -3.6474 -2.2178 17 6 1.9771 -4.0905 -3.0548 18 8 0.9474 -3.5188 -3.3417 19 6 2.4322 -5.4247 -3.5522 20 1 2.1494 -6.2081 -2.8491 21 6 2.0916 -5.8502 -4.9638 22 6 2.7343 -7.2378 -5.1614 23 6 4.2398 -7.2061 -4.9219 24 6 4.5964 -6.5912 -3.5559 25 6 3.9756 -5.2149 -3.5239 26 1 4.2930 -4.6457 -4.3976 27 6 4.1028 -4.3718 -2.2955 28 8 5.0387 -4.3405 -1.5256 29 1 -1.0500 0.0002 0.0000 30 1 3.0088 0.9119 0.4755 31 1 3.0097 -0.8664 0.5512 32 1 1.7298 3.2477 -0.4251 33 1 3.3973 -2.6493 -0.4275 34 1 1.7354 -2.4261 -1.0244 35 1 2.5057 -5.1401 -5.6795 36 1 1.0103 -5.9177 -5.0842 37 1 2.5441 -7.5750 -6.1804 38 1 2.2789 -7.9422 -4.4653 39 1 4.7112 -6.6176 -5.7089 40 1 4.6265 -8.2244 -4.9636 41 1 5.6787 -6.5146 -3.4526 42 1 4.1865 -7.2039 -2.7528 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490995213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:19 Heat of formation + Delta-G solvation = -27.444295 kcal Electronic energy + Delta-G solvation = -27411.412651 eV Core-core repulsion = 23552.043851 eV Total energy + Delta-G solvation = -3859.368800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.03892 -38.75918 -38.30107 -37.64275 -35.55944 -34.98956 -32.34352 -31.64693 -31.23322 -31.18305 -27.93660 -26.41544 -25.18216 -24.57137 -22.90825 -21.88800 -20.46630 -19.86398 -18.78707 -17.92150 -17.22998 -16.78761 -16.64873 -16.36575 -15.48901 -15.37887 -14.79016 -14.68071 -14.61581 -14.29990 -14.00518 -13.82137 -13.64959 -13.41709 -13.02582 -12.85168 -12.59037 -12.49257 -12.23682 -11.67533 -11.58300 -11.51654 -11.47239 -11.31704 -11.02721 -10.95002 -10.74325 -10.55737 -10.37084 -9.95370 -9.84064 -9.65560 -9.39310 -9.31747 -8.92634 -8.41577 -7.89808 -6.35353 -3.93371 1.75695 2.57826 2.84635 3.13354 3.23625 3.29169 3.59690 3.73748 3.84853 4.00018 4.15334 4.23556 4.26942 4.67042 4.80351 4.83102 4.90719 4.94153 5.01268 5.04852 5.08147 5.20470 5.39630 5.46242 5.49080 5.56986 5.61283 5.70932 5.75662 5.78096 5.83516 5.86220 5.88591 5.98029 6.11118 6.25658 6.73688 6.98510 7.01190 7.50589 7.52043 7.91833 8.04468 8.36688 8.76125 9.06366 9.27493 9.79683 10.65303 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020401 B = 0.003743 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.153639 B = 7478.921560 C = 7834.270968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.121 4.121 3 C 0.228 3.772 4 N -0.433 5.433 5 C -0.312 4.312 6 H 0.103 0.897 7 C 0.032 3.968 8 N -0.866 5.866 9 Si 0.926 3.074 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.439 3.561 14 O -0.575 6.575 15 C 0.087 3.913 16 N -0.569 5.569 17 C 0.544 3.456 18 O -0.463 6.463 19 C -0.130 4.130 20 H 0.120 0.880 21 C -0.098 4.098 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.096 4.096 25 C -0.131 4.131 26 H 0.125 0.875 27 C 0.551 3.449 28 O -0.476 6.476 29 H 0.200 0.800 30 H 0.118 0.882 31 H 0.060 0.940 32 H 0.269 0.731 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.653 -17.776 -1.839 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.122 4.122 3 C 0.105 3.895 4 N -0.152 5.152 5 C -0.439 4.439 6 H 0.120 0.880 7 C -0.172 4.172 8 N -0.504 5.504 9 Si 0.753 3.247 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.194 1.194 13 C 0.226 3.774 14 O -0.459 6.459 15 C -0.038 4.038 16 N -0.313 5.313 17 C 0.332 3.668 18 O -0.332 6.332 19 C -0.151 4.151 20 H 0.138 0.862 21 C -0.136 4.136 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.133 4.133 25 C -0.152 4.152 26 H 0.143 0.857 27 C 0.341 3.659 28 O -0.347 6.347 29 H 0.217 0.783 30 H 0.136 0.864 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.721 -17.259 -2.022 17.392 hybrid contribution -0.138 1.292 -0.039 1.300 sum 0.583 -15.966 -2.061 16.109 Atomic orbital electron populations 1.24320 0.95416 1.05818 1.01666 1.23168 0.94355 0.95956 0.98726 1.18346 0.84284 1.02126 0.84745 1.43631 1.55189 1.05795 1.10596 1.19655 1.27424 0.82138 1.14672 0.87954 1.25343 0.95194 0.99482 0.97215 1.70020 1.21450 1.26117 1.32842 0.85935 0.79848 0.80678 0.78284 1.20362 1.20746 1.19362 1.20117 0.85128 0.84941 0.87224 1.90523 1.51204 1.86249 1.17938 1.21612 1.04284 0.85167 0.92700 1.47460 1.15770 1.29365 1.38751 1.20478 0.82481 0.86852 0.76950 1.90759 1.24192 1.63172 1.55029 1.22112 0.95462 0.96105 1.01424 0.86188 1.21308 1.01888 0.97237 0.93156 1.21633 0.95324 0.96442 1.02177 1.21600 0.96106 1.01273 0.96785 1.21180 1.01536 0.92461 0.98166 1.22099 0.96099 0.98627 0.98409 0.85744 1.20437 0.80588 0.79298 0.85599 1.90717 1.33062 1.65241 1.45671 0.78260 0.86401 0.92214 0.92012 0.87575 0.87504 0.90529 0.90180 0.91273 0.91739 0.91581 0.91304 0.90173 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.30 19.25 29.55 0.57 -4.73 16 2 C -0.12 -2.71 10.77 -37.12 -0.40 -3.11 16 3 C 0.23 5.06 4.90 -6.83 -0.03 5.03 16 4 N -0.43 -11.13 2.61 -117.94 -0.31 -11.44 16 5 C -0.31 -8.66 9.31 -14.93 -0.14 -8.80 16 6 H 0.10 2.99 7.40 -52.49 -0.39 2.61 16 7 C 0.03 0.83 4.98 -17.47 -0.09 0.74 16 8 N -0.87 -22.76 9.38 55.50 0.52 -22.24 16 9 Si 0.93 20.66 29.58 -169.99 -5.03 15.63 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.44 11.00 7.61 -10.99 -0.08 10.92 16 14 O -0.58 -16.25 16.11 5.54 0.09 -16.16 16 15 C 0.09 1.73 4.84 -5.19 -0.03 1.70 16 16 N -0.57 -10.21 2.16 -116.85 -0.25 -10.47 16 17 C 0.54 9.19 7.72 -10.99 -0.08 9.10 16 18 O -0.46 -9.47 17.83 5.61 0.10 -9.37 16 19 C -0.13 -1.48 2.41 -91.72 -0.22 -1.71 16 20 H 0.12 1.08 7.81 -51.93 -0.41 0.68 16 21 C -0.10 -0.92 5.87 -26.96 -0.16 -1.08 16 22 C -0.12 -0.80 5.80 -26.38 -0.15 -0.95 16 23 C -0.12 -0.82 5.81 -26.49 -0.15 -0.97 16 24 C -0.10 -0.83 5.84 -27.21 -0.16 -0.98 16 25 C -0.13 -1.58 2.37 -91.84 -0.22 -1.80 16 26 H 0.12 1.56 7.81 -51.93 -0.41 1.15 16 27 C 0.55 9.04 7.75 -10.97 -0.08 8.96 16 28 O -0.48 -8.88 17.68 5.60 0.10 -8.78 16 29 H 0.20 3.43 7.80 -54.09 -0.42 3.00 16 30 H 0.12 2.74 6.35 -51.93 -0.33 2.42 16 31 H 0.06 1.09 6.78 -51.93 -0.35 0.74 16 32 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.11 1.86 7.18 -51.93 -0.37 1.49 16 34 H 0.11 2.06 7.28 -51.93 -0.38 1.68 16 35 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.56 7.94 -51.92 -0.41 0.15 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -34.66 353.26 -6.43 -41.09 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.55 Total: 4.08 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: -1.43 Total: 12.32 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.04 Total: -44.15 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: 0.29 Total: -34.31 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.66 -6.43 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490995213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.650 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds