Wall clock time and date at job start Tue Mar 31 2020 04:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47193 * 87.56058 * 3 2 1 5 5 C 1.37105 * 120.00003 * 98.05831 * 4 3 2 6 6 H 1.07996 * 120.00154 * 159.35755 * 5 4 3 7 7 C 1.38950 * 119.99802 * 339.36083 * 5 4 3 8 8 N 1.31406 * 120.00333 * 344.10636 * 7 5 4 9 9 Si 1.86804 * 119.99947 * 164.10644 * 7 5 4 10 10 H 1.48500 * 109.47190 * 89.99727 * 9 7 5 11 11 H 1.48504 * 109.46938 * 210.00062 * 9 7 5 12 12 H 1.48498 * 109.46882 * 329.99524 * 9 7 5 13 13 C 1.34776 * 120.00105 * 278.05972 * 4 3 2 14 14 O 1.21296 * 119.99653 * 179.97438 * 13 4 3 15 15 C 1.50695 * 119.99829 * 359.97438 * 13 4 3 16 16 N 1.46506 * 109.46912 * 180.02562 * 15 13 4 17 17 C 1.36046 * 123.27680 * 269.70491 * 16 15 13 18 18 O 1.21217 * 127.00328 * 12.68060 * 17 16 15 19 19 C 1.49484 * 106.07261 * 192.55940 * 17 16 15 20 20 H 1.09001 * 110.35609 * 85.35718 * 19 17 16 21 21 C 1.51317 * 119.52972 * 214.29618 * 19 17 16 22 22 C 1.54194 * 106.19078 * 178.50244 * 21 19 17 23 23 C 1.52470 * 111.88388 * 302.48422 * 22 21 19 24 24 C 1.53990 * 112.10677 * 53.05052 * 23 22 21 25 25 C 1.51017 * 106.70942 * 303.65512 * 24 23 22 26 26 H 1.09002 * 109.83055 * 306.24186 * 25 24 23 27 27 C 1.36054 * 123.28548 * 89.99982 * 16 15 13 28 28 O 1.21228 * 127.01451 * 12.69688 * 27 16 15 29 29 H 4.40640 * 5.51436 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46904 * 207.55849 * 3 2 1 31 31 H 1.08998 * 109.47381 * 327.55935 * 3 2 1 32 32 H 0.97003 * 120.00812 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47181 * 299.99897 * 15 13 4 34 34 H 1.08997 * 109.47367 * 60.00205 * 15 13 4 35 35 H 1.08996 * 110.10772 * 59.33132 * 21 19 17 36 36 H 1.09001 * 110.10263 * 297.66791 * 21 19 17 37 37 H 1.09000 * 108.99358 * 181.86566 * 22 21 19 38 38 H 1.08999 * 108.99478 * 63.10558 * 22 21 19 39 39 H 1.08999 * 108.95832 * 292.37528 * 23 22 21 40 40 H 1.09005 * 108.95537 * 173.72752 * 23 22 21 41 41 H 1.08995 * 110.00384 * 184.35112 * 24 23 22 42 42 H 1.09008 * 109.99837 * 62.95283 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1343 -0.0579 -1.3800 5 6 3.5192 1.0917 -2.0203 6 1 4.1737 1.0390 -2.8778 7 6 3.0673 2.3246 -1.5660 8 7 2.0456 2.3870 -0.7420 9 14 3.9124 3.8935 -2.1264 10 1 3.2620 4.3906 -3.3654 11 1 3.8015 4.9229 -1.0618 12 1 5.3454 3.6141 -2.3974 13 6 3.2052 -1.2419 -2.0201 14 8 3.6091 -1.2902 -3.1628 15 6 2.7826 -2.5055 -1.3161 16 7 2.9538 -3.6474 -2.2178 17 6 1.9771 -4.0905 -3.0548 18 8 0.9474 -3.5188 -3.3417 19 6 2.4322 -5.4247 -3.5522 20 1 2.1494 -6.2081 -2.8491 21 6 2.0916 -5.8502 -4.9638 22 6 2.7343 -7.2378 -5.1614 23 6 4.2398 -7.2061 -4.9219 24 6 4.5964 -6.5912 -3.5559 25 6 3.9756 -5.2149 -3.5239 26 1 4.2930 -4.6457 -4.3976 27 6 4.1028 -4.3718 -2.2955 28 8 5.0387 -4.3405 -1.5256 29 1 -1.0500 0.0002 0.0000 30 1 3.0088 0.9119 0.4755 31 1 3.0097 -0.8664 0.5512 32 1 1.7298 3.2477 -0.4251 33 1 3.3973 -2.6493 -0.4275 34 1 1.7354 -2.4261 -1.0244 35 1 2.5057 -5.1401 -5.6795 36 1 1.0103 -5.9177 -5.0842 37 1 2.5441 -7.5750 -6.1804 38 1 2.2789 -7.9422 -4.4653 39 1 4.7112 -6.6176 -5.7089 40 1 4.6265 -8.2244 -4.9636 41 1 5.6787 -6.5146 -3.4526 42 1 4.1865 -7.2039 -2.7528 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490995213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:18 Heat of formation + Delta-G solvation = -49.302453 kcal Electronic energy + Delta-G solvation = -27412.360492 eV Core-core repulsion = 23552.043851 eV Total energy + Delta-G solvation = -3860.316640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.26935 -40.57071 -39.70016 -38.68683 -37.29813 -36.61381 -34.19544 -33.13267 -32.77823 -31.94336 -29.39696 -28.19378 -26.39809 -26.31083 -23.95496 -22.92332 -21.49221 -21.16118 -20.21098 -19.76771 -18.76884 -18.31182 -18.26542 -17.91058 -16.97095 -16.56907 -16.33747 -16.13737 -15.95920 -15.89314 -15.55572 -14.86771 -14.73270 -14.57472 -14.44407 -14.29276 -14.06199 -13.84825 -13.53968 -13.34090 -13.24858 -12.84081 -12.58980 -12.46481 -12.25053 -12.17693 -12.06115 -11.84910 -11.47310 -11.36465 -11.30230 -11.12250 -10.90722 -10.87686 -10.69884 -10.30233 -9.90668 -8.37467 -6.04580 0.43844 1.20544 1.31502 1.39161 1.51592 1.56323 1.74420 2.04543 2.25642 2.31587 2.74536 2.98822 3.04656 3.23578 3.28864 3.74454 3.80274 3.91210 3.94285 4.05331 4.09523 4.12914 4.18026 4.32981 4.34389 4.44215 4.47812 4.59485 4.82486 4.87596 4.92136 5.11453 5.17767 5.23369 5.33645 5.35393 5.38475 5.38722 5.55483 5.65491 5.94499 6.20115 6.32813 6.65278 7.02746 7.05670 7.27363 7.80873 8.60759 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020401 B = 0.003743 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.153639 B = 7478.921560 C = 7834.270968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.160 4.160 3 C 0.229 3.771 4 N -0.443 5.443 5 C -0.352 4.352 6 H 0.073 0.927 7 C 0.004 3.996 8 N -0.873 5.873 9 Si 0.989 3.011 10 H -0.281 1.281 11 H -0.264 1.264 12 H -0.270 1.270 13 C 0.424 3.576 14 O -0.621 6.621 15 C 0.097 3.903 16 N -0.580 5.580 17 C 0.535 3.465 18 O -0.508 6.508 19 C -0.114 4.114 20 H 0.155 0.845 21 C -0.099 4.099 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.091 4.091 25 C -0.122 4.122 26 H 0.117 0.883 27 C 0.545 3.455 28 O -0.503 6.503 29 H 0.234 0.766 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.274 0.726 33 H 0.128 0.872 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -19.737 -1.664 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.162 4.162 3 C 0.107 3.893 4 N -0.161 5.161 5 C -0.480 4.480 6 H 0.091 0.909 7 C -0.199 4.199 8 N -0.510 5.510 9 Si 0.813 3.187 10 H -0.207 1.207 11 H -0.188 1.188 12 H -0.195 1.195 13 C 0.213 3.787 14 O -0.508 6.508 15 C -0.028 4.028 16 N -0.324 5.324 17 C 0.326 3.674 18 O -0.380 6.380 19 C -0.135 4.135 20 H 0.173 0.827 21 C -0.137 4.137 22 C -0.148 4.148 23 C -0.154 4.154 24 C -0.129 4.129 25 C -0.143 4.143 26 H 0.134 0.866 27 C 0.337 3.663 28 O -0.375 6.375 29 H 0.250 0.750 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.302 -19.243 -1.814 19.331 hybrid contribution -0.060 1.968 -0.068 1.970 sum 0.242 -17.276 -1.882 17.380 Atomic orbital electron populations 1.25188 0.96396 1.04236 0.99883 1.23412 0.94954 0.97462 1.00326 1.18422 0.84667 1.03048 0.83142 1.43850 1.54886 1.05547 1.11835 1.19576 1.28972 0.84014 1.15389 0.90878 1.26049 0.95360 1.01596 0.96920 1.70114 1.21371 1.27037 1.32464 0.85012 0.78571 0.77123 0.78040 1.20659 1.18818 1.19466 1.21005 0.84264 0.86385 0.87095 1.90469 1.53139 1.87204 1.20005 1.21420 1.04580 0.83617 0.93220 1.47791 1.17020 1.28780 1.38814 1.21525 0.81476 0.88423 0.75926 1.90722 1.26014 1.64801 1.56461 1.22246 0.94290 0.93454 1.03522 0.82725 1.21401 1.02412 0.98774 0.91142 1.21613 0.94935 0.94521 1.03707 1.21605 0.96268 1.02308 0.95193 1.21274 1.01304 0.90186 1.00129 1.22164 0.96994 0.99845 0.95266 0.86558 1.21239 0.79522 0.79210 0.86363 1.90691 1.33668 1.66220 1.46949 0.74964 0.87881 0.88610 0.91540 0.85468 0.87113 0.91959 0.89870 0.89774 0.89866 0.92001 0.88931 0.90342 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.72 19.25 74.32 1.43 -8.29 16 2 C -0.16 -7.19 10.77 31.13 0.34 -6.85 16 3 C 0.23 10.33 4.90 84.57 0.41 10.75 16 4 N -0.44 -23.60 2.61 -645.42 -1.68 -25.28 16 5 C -0.35 -20.41 9.31 84.04 0.78 -19.63 16 6 H 0.07 4.56 7.40 -2.91 -0.02 4.54 16 7 C 0.00 0.23 4.98 84.93 0.42 0.65 16 8 N -0.87 -45.98 9.38 21.66 0.20 -45.77 16 9 Si 0.99 42.83 29.58 68.60 2.03 44.86 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 13 C 0.42 22.15 7.61 87.66 0.67 22.81 16 14 O -0.62 -37.03 16.11 -3.08 -0.05 -37.08 16 15 C 0.10 3.92 4.84 85.63 0.41 4.34 16 16 N -0.58 -21.10 2.16 -758.98 -1.64 -22.74 16 17 C 0.53 18.22 7.72 87.08 0.67 18.89 16 18 O -0.51 -21.38 17.83 -2.84 -0.05 -21.43 16 19 C -0.11 -2.43 2.41 -11.50 -0.03 -2.46 16 20 H 0.16 2.26 7.81 -2.39 -0.02 2.24 16 21 C -0.10 -1.67 5.87 30.45 0.18 -1.49 16 22 C -0.11 -1.06 5.80 30.82 0.18 -0.88 16 23 C -0.12 -1.17 5.81 30.75 0.18 -0.99 16 24 C -0.09 -1.32 5.84 30.28 0.18 -1.14 16 25 C -0.12 -2.80 2.37 -11.58 -0.03 -2.83 16 26 H 0.12 2.92 7.81 -2.39 -0.02 2.90 16 27 C 0.54 17.86 7.75 87.09 0.67 18.53 16 28 O -0.50 -18.82 17.68 -2.87 -0.05 -18.87 16 29 H 0.23 7.43 7.80 -4.42 -0.03 7.40 16 30 H 0.10 4.90 6.35 -2.39 -0.02 4.88 16 31 H 0.10 3.50 6.78 -2.39 -0.02 3.48 16 32 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 33 H 0.13 4.48 7.18 -2.39 -0.02 4.46 16 34 H 0.11 4.35 7.28 -2.39 -0.02 4.33 16 35 H 0.06 1.22 7.90 -2.39 -0.02 1.20 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.09 1.03 7.94 -2.38 -0.02 1.01 16 Total: -1.00 -79.33 353.26 6.26 -73.06 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 1.04 Total: 21.84 kcal Atomic # 6 Polarization: 24.94 SS G_CDS: 6.47 Total: 31.41 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -3.12 Total: -93.80 kcal Atomic # 8 Polarization: -77.23 SS G_CDS: -0.15 Total: -77.38 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -79.33 6.26 -73.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490995213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.762 kcal (2) G-P(sol) polarization free energy of solvation -79.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds