Wall clock time and date at job start Tue Mar 31 2020 04:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47425 * 353.82155 * 3 2 1 5 5 C 1.37095 * 119.99815 * 95.89923 * 4 3 2 6 6 H 1.07995 * 120.00119 * 162.00437 * 5 4 3 7 7 C 1.38956 * 119.99926 * 342.00383 * 5 4 3 8 8 N 1.31406 * 120.00323 * 337.39831 * 7 5 4 9 9 Si 1.86807 * 119.99501 * 157.39698 * 7 5 4 10 10 H 1.48492 * 109.47538 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46958 * 120.00418 * 9 7 5 12 12 H 1.48502 * 109.46710 * 239.99614 * 9 7 5 13 13 C 1.34773 * 119.99785 * 275.63062 * 4 3 2 14 14 O 1.21299 * 119.99402 * 180.27246 * 13 4 3 15 15 C 1.50694 * 120.00432 * 0.27069 * 13 4 3 16 16 N 1.46507 * 109.47426 * 180.02562 * 15 13 4 17 17 C 1.34342 * 122.83871 * 269.71032 * 16 15 13 18 18 O 1.21224 * 125.94802 * 357.03652 * 17 16 15 19 19 C 1.50680 * 108.08617 * 176.90787 * 17 16 15 20 20 H 1.09001 * 105.82569 * 256.30607 * 19 17 16 21 21 C 1.49439 * 113.19901 * 140.29349 * 19 17 16 22 22 C 1.52514 * 113.29946 * 267.14679 * 21 19 17 23 23 C 1.53448 * 107.59913 * 305.24275 * 22 21 19 24 24 C 1.51415 * 108.63692 * 67.96360 * 23 22 21 25 25 C 1.51223 * 105.06968 * 8.15486 * 19 17 16 26 26 H 1.09001 * 109.81910 * 233.91867 * 25 19 17 27 27 C 1.34033 * 122.84473 * 89.99770 * 16 15 13 28 28 O 1.21229 * 125.59469 * 356.78876 * 27 16 15 29 29 H 4.40649 * 5.51329 * 179.97438 * 4 1 2 30 30 H 1.09003 * 109.46872 * 233.82499 * 3 2 1 31 31 H 1.08997 * 109.47006 * 113.82413 * 3 2 1 32 32 H 0.96998 * 120.00256 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.46934 * 300.00252 * 15 13 4 34 34 H 1.09002 * 109.46909 * 60.00087 * 15 13 4 35 35 H 1.08999 * 108.71240 * 28.13710 * 21 19 17 36 36 H 1.09001 * 108.71538 * 146.16423 * 21 19 17 37 37 H 1.09002 * 109.83151 * 64.76866 * 22 21 19 38 38 H 1.08997 * 109.83443 * 185.65358 * 22 21 19 39 39 H 1.08995 * 109.75334 * 188.16862 * 23 22 21 40 40 H 1.08998 * 109.74960 * 308.90913 * 23 22 21 41 41 H 1.09000 * 109.78150 * 180.92682 * 24 23 22 42 42 H 1.09003 * 107.32434 * 62.97643 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3723 0.1487 5 6 3.4789 -2.1013 -0.9603 6 1 4.0993 -2.9794 -0.8583 7 6 3.0292 -1.7104 -2.2156 8 7 1.9584 -0.9565 -2.3246 9 14 3.9469 -2.2566 -3.7483 10 1 5.1100 -3.0929 -3.3573 11 1 3.0370 -3.0488 -4.6141 12 1 4.4228 -1.0626 -4.4921 13 6 3.2520 -1.9168 1.3760 14 8 3.6615 -3.0519 1.4993 15 6 2.8739 -1.1155 2.5949 16 7 3.0904 -1.9241 3.7974 17 6 2.1393 -2.7114 4.3268 18 8 0.9994 -2.8169 3.9281 19 6 2.7375 -3.4428 5.5006 20 1 2.9227 -4.4596 5.1542 21 6 1.8024 -3.5591 6.6604 22 6 1.9549 -2.4296 7.6738 23 6 3.4275 -2.3871 8.1031 24 6 4.2626 -1.9365 6.9232 25 6 4.0997 -2.8174 5.7009 26 1 4.8661 -3.5925 5.6993 27 6 4.2523 -1.9366 4.4655 28 8 5.2592 -1.3445 4.1411 29 1 -1.0498 -0.0003 0.0002 30 1 3.0090 0.6074 0.8296 31 1 3.0091 0.4159 -0.9401 32 1 1.6443 -0.6840 -3.2009 33 1 3.4903 -0.2180 2.6452 34 1 1.8234 -0.8318 2.5318 35 1 0.7787 -3.5572 6.2859 36 1 1.9861 -4.5081 7.1641 37 1 1.6758 -1.4810 7.2151 38 1 1.3216 -2.6218 8.5399 39 1 3.5496 -1.6901 8.9321 40 1 3.7514 -3.3824 8.4070 41 1 5.3158 -1.9155 7.2032 42 1 3.9482 -0.9238 6.6708 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490995215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:21 Heat of formation + Delta-G solvation = -31.963508 kcal Electronic energy + Delta-G solvation = -27540.153460 eV Core-core repulsion = 23680.588693 eV Total energy + Delta-G solvation = -3859.564767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.17077 -38.75971 -38.40078 -37.51928 -35.56636 -35.00343 -32.40685 -31.87870 -31.55576 -31.26793 -28.08815 -26.41848 -25.09883 -24.56391 -23.12713 -22.43727 -20.42709 -19.46471 -18.74704 -17.94557 -17.32384 -16.69605 -16.50688 -16.24929 -16.09158 -15.30875 -14.85343 -14.70649 -14.51210 -14.32235 -14.24250 -13.94190 -13.42515 -13.21138 -13.02188 -12.87114 -12.81233 -12.51942 -12.23964 -12.19248 -11.71476 -11.58845 -11.52052 -11.05199 -11.03184 -10.71215 -10.52112 -10.47894 -10.35658 -10.15946 -9.86557 -9.67829 -9.37995 -9.31169 -8.95908 -8.43743 -7.93465 -6.38440 -3.90532 1.73847 2.62859 2.93304 3.10658 3.24199 3.31490 3.58878 3.82820 3.95077 4.00874 4.13196 4.16518 4.27469 4.45479 4.71902 4.81042 4.85323 4.95075 4.98682 5.11641 5.21629 5.26019 5.39467 5.45973 5.50074 5.54383 5.63634 5.69210 5.73646 5.75455 5.80245 5.83107 5.94247 6.02966 6.09828 6.21899 6.65794 6.98050 7.05905 7.52432 7.53056 7.90418 8.03600 8.35440 8.77526 9.05506 9.27048 9.78974 10.62215 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022213 B = 0.003794 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.211808 B = 7377.342589 C = 7829.227879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.123 4.123 3 C 0.229 3.771 4 N -0.431 5.431 5 C -0.316 4.316 6 H 0.105 0.895 7 C 0.034 3.966 8 N -0.857 5.857 9 Si 0.921 3.079 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.279 1.279 13 C 0.438 3.562 14 O -0.577 6.577 15 C 0.085 3.915 16 N -0.552 5.552 17 C 0.538 3.462 18 O -0.474 6.474 19 C -0.118 4.118 20 H 0.112 0.888 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.103 4.103 25 C -0.103 4.103 26 H 0.120 0.880 27 C 0.533 3.467 28 O -0.479 6.479 29 H 0.200 0.800 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.269 0.731 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 1.267 18.391 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.125 4.125 3 C 0.106 3.894 4 N -0.150 5.150 5 C -0.443 4.443 6 H 0.123 0.877 7 C -0.171 4.171 8 N -0.494 5.494 9 Si 0.747 3.253 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.205 1.205 13 C 0.225 3.775 14 O -0.461 6.461 15 C -0.040 4.040 16 N -0.293 5.293 17 C 0.327 3.673 18 O -0.345 6.345 19 C -0.140 4.140 20 H 0.130 0.870 21 C -0.138 4.138 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.124 4.124 26 H 0.138 0.862 27 C 0.321 3.679 28 O -0.350 6.350 29 H 0.217 0.783 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.475 1.064 17.818 17.856 hybrid contribution -0.020 -0.195 -1.382 1.396 sum 0.455 0.869 16.435 16.465 Atomic orbital electron populations 1.24298 0.95383 1.01617 1.05400 1.23086 0.94287 0.98770 0.96331 1.18287 0.84465 0.84506 1.02152 1.43649 1.55346 1.11086 1.04886 1.19693 1.29806 1.11804 0.83035 0.87725 1.25310 0.95024 0.97458 0.99344 1.70112 1.18458 1.35935 1.24876 0.85954 0.79831 0.78516 0.80962 1.19149 1.20824 1.20476 1.20001 0.85450 0.87691 0.84339 1.90524 1.51032 1.18910 1.85655 1.21649 1.04346 0.94225 0.83745 1.46386 1.14935 1.42079 1.25921 1.20596 0.84565 0.77924 0.84217 1.90754 1.16944 1.61862 1.64909 1.20517 0.95101 1.02348 0.96000 0.86999 1.20540 0.99310 0.99873 0.94075 1.21586 0.96617 0.98978 0.98766 1.21323 0.94896 1.02134 0.97021 1.20778 1.01605 0.98698 0.93017 1.21292 0.98000 0.98777 0.94335 0.86219 1.21054 0.81791 0.80706 0.84371 1.90740 1.29596 1.44082 1.70554 0.78261 0.91955 0.87056 0.92062 0.87650 0.87141 0.90023 0.90545 0.91703 0.90930 0.91095 0.91322 0.90172 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.22 19.25 29.55 0.57 -4.65 16 2 C -0.12 -2.78 10.86 -37.12 -0.40 -3.18 16 3 C 0.23 5.09 4.91 -6.83 -0.03 5.05 16 4 N -0.43 -11.12 2.60 -117.93 -0.31 -11.42 16 5 C -0.32 -8.83 9.31 -14.93 -0.14 -8.97 16 6 H 0.11 3.10 7.40 -52.49 -0.39 2.71 16 7 C 0.03 0.88 4.83 -17.47 -0.08 0.80 16 8 N -0.86 -22.54 9.57 55.50 0.53 -22.00 16 9 Si 0.92 20.57 29.61 -169.99 -5.03 15.54 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.44 11.05 7.64 -10.99 -0.08 10.96 16 14 O -0.58 -16.42 16.08 5.54 0.09 -16.33 16 15 C 0.09 1.70 4.67 -5.19 -0.02 1.67 16 16 N -0.55 -10.00 2.06 -116.23 -0.24 -10.24 16 17 C 0.54 9.18 7.61 -11.19 -0.09 9.09 16 18 O -0.47 -9.52 16.95 5.61 0.10 -9.42 16 19 C -0.12 -1.40 2.62 -94.43 -0.25 -1.65 16 20 H 0.11 1.26 8.06 -51.93 -0.42 0.84 16 21 C -0.10 -0.91 5.36 -28.74 -0.15 -1.06 16 22 C -0.12 -0.93 6.07 -26.75 -0.16 -1.09 16 23 C -0.12 -0.78 5.92 -27.30 -0.16 -0.95 16 24 C -0.10 -0.91 5.27 -28.27 -0.15 -1.06 16 25 C -0.10 -1.17 3.30 -92.51 -0.31 -1.47 16 26 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 27 C 0.53 8.79 7.02 -10.43 -0.07 8.72 16 28 O -0.48 -9.20 17.53 5.60 0.10 -9.10 16 29 H 0.20 3.45 7.80 -54.10 -0.42 3.03 16 30 H 0.06 1.14 6.68 -51.93 -0.35 0.79 16 31 H 0.11 2.57 6.51 -51.93 -0.34 2.23 16 32 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.11 1.86 7.14 -51.93 -0.37 1.49 16 34 H 0.11 2.16 7.21 -51.93 -0.37 1.78 16 35 H 0.08 0.85 7.44 -51.93 -0.39 0.46 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.57 8.12 -51.93 -0.42 0.14 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -35.00 351.48 -6.54 -41.54 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.53 Total: 3.94 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -1.54 Total: 12.21 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.01 Total: -43.66 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: 0.28 Total: -34.86 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.00 -6.54 -41.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490995215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.577 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds