Wall clock time and date at job start Tue Mar 31 2020 04:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47066 * 2 1 4 4 H 1.09001 * 109.66183 * 52.75340 * 3 2 1 5 5 C 1.50073 * 109.53227 * 292.67574 * 3 2 1 6 6 O 1.21280 * 118.50539 * 47.48957 * 5 3 2 7 7 N 1.33382 * 123.00800 * 227.67373 * 5 3 2 8 8 C 1.46496 * 117.70454 * 184.14020 * 7 5 3 9 9 C 1.52997 * 109.47331 * 270.01546 * 8 7 5 10 10 C 1.45648 * 124.58825 * 4.15973 * 7 5 3 11 11 C 1.52994 * 110.77317 * 338.07894 * 10 7 5 12 12 N 1.47050 * 109.56759 * 173.04958 * 3 2 1 13 13 S 1.65600 * 121.34854 * 342.58354 * 12 3 2 14 14 O 1.42103 * 104.27418 * 169.36355 * 13 12 3 15 15 O 1.42097 * 104.27894 * 41.50919 * 13 12 3 16 16 C 1.81400 * 104.45311 * 285.43203 * 13 12 3 17 17 C 1.52998 * 109.47306 * 181.25103 * 16 13 12 18 18 C 1.50695 * 109.47128 * 180.02562 * 17 16 13 19 19 H 1.07998 * 120.00136 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99830 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00432 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99879 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47228 * 270.00079 * 22 20 18 24 24 H 1.48496 * 109.47453 * 150.00204 * 22 20 18 25 25 H 1.48498 * 109.47258 * 29.99553 * 22 20 18 26 26 H 1.09006 * 109.46988 * 68.03674 * 1 2 3 27 27 H 1.08996 * 109.47229 * 188.03198 * 1 2 3 28 28 H 1.08996 * 109.47514 * 308.03816 * 1 2 3 29 29 H 1.08996 * 109.46879 * 240.00026 * 2 1 3 30 30 H 1.08991 * 109.47019 * 120.00210 * 2 1 3 31 31 H 1.08998 * 109.47366 * 30.02350 * 8 7 5 32 32 H 1.09006 * 109.46849 * 150.01700 * 8 7 5 33 33 H 1.08998 * 109.47365 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.47238 * 300.00464 * 9 8 7 35 35 H 1.08997 * 109.47000 * 59.99966 * 9 8 7 36 36 H 1.08999 * 109.21876 * 217.74837 * 10 7 5 37 37 H 1.08995 * 109.22071 * 98.41269 * 10 7 5 38 38 H 1.08996 * 109.72044 * 287.05238 * 11 10 7 39 39 H 1.08995 * 109.71773 * 166.39960 * 11 10 7 40 40 H 1.09002 * 109.46837 * 61.24893 * 16 13 12 41 41 H 1.09000 * 109.47063 * 301.25375 * 16 13 12 42 42 H 1.09000 * 109.46833 * 59.99995 * 17 16 13 43 43 H 1.09000 * 109.47282 * 300.00138 * 17 16 13 44 44 H 0.97000 * 119.99636 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5765 1.9954 0.8171 5 6 1.6932 2.0973 -1.3050 6 8 0.5622 1.9825 -1.7277 7 7 2.5728 2.7969 -2.0234 8 6 2.0865 3.4644 -3.2334 9 6 2.2229 2.5180 -4.4277 10 6 3.9828 2.9434 -1.6893 11 6 4.2179 2.6809 -0.2005 12 7 3.5009 1.4484 0.1677 13 16 4.3077 0.1206 0.7408 14 8 5.6788 0.4213 0.5197 15 8 3.6840 -0.9770 0.0885 16 6 3.9392 0.0987 2.5168 17 6 4.6620 -1.0793 3.1732 18 6 4.3554 -1.0979 4.6485 19 1 3.7099 -0.3446 5.0754 20 6 4.8998 -2.0759 5.4535 21 7 5.6862 -2.9930 4.9338 22 14 4.5191 -2.0994 7.2821 23 1 5.5291 -1.2883 8.0085 24 1 4.5583 -3.4985 7.7781 25 1 3.1674 -1.5297 7.5137 26 1 -0.3633 0.3844 -0.9531 27 1 -0.3633 -1.0175 0.1436 28 1 -0.3634 0.6332 0.8093 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.0391 3.7359 -3.1026 32 1 2.6752 4.3639 -3.4135 33 1 1.8607 3.0144 -5.3280 34 1 3.2705 2.2465 -4.5585 35 1 1.6344 1.6184 -4.2476 36 1 4.3053 3.9563 -1.9302 37 1 4.5661 2.2331 -2.2753 38 1 3.8364 3.5172 0.3852 39 1 5.2843 2.5559 -0.0130 40 1 2.8643 -0.0072 2.6636 41 1 4.2776 1.0306 2.9697 42 1 5.7369 -0.9734 3.0264 43 1 4.3235 -2.0112 2.7204 44 1 5.8830 -2.9815 3.9840 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494560914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:28 Heat of formation + Delta-G solvation = -100.681507 kcal Electronic energy + Delta-G solvation = -26568.061969 eV Core-core repulsion = 22840.961317 eV Total energy + Delta-G solvation = -3727.100652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.88677 -37.26590 -37.02849 -36.19354 -35.60680 -34.32530 -32.89659 -31.09586 -31.00418 -29.49302 -26.28387 -25.16500 -24.39218 -23.04028 -22.16319 -21.78491 -19.65138 -18.36566 -17.70775 -17.48668 -16.88366 -16.28809 -16.16961 -15.84321 -15.61198 -15.24830 -14.36771 -14.08096 -13.83140 -13.80137 -13.66700 -13.48967 -13.02598 -12.92965 -12.81669 -12.58371 -12.36438 -12.19309 -12.18830 -11.92434 -11.82449 -11.73540 -11.47129 -11.17839 -11.08574 -11.02144 -10.63135 -10.56214 -10.53850 -10.34344 -10.14070 -9.83080 -9.15737 -8.95091 -8.67904 -8.49427 -6.51303 -4.24618 0.48919 2.40679 2.54247 2.85958 3.36576 3.40083 3.55928 4.02848 4.16443 4.28873 4.37968 4.44047 4.65111 4.76571 4.80924 4.92107 5.00820 5.04631 5.15625 5.17185 5.23571 5.34865 5.35565 5.44005 5.47379 5.52730 5.60721 5.68152 5.71218 5.87572 5.94900 6.07320 6.15824 6.25999 6.33297 6.38950 6.53919 6.90222 7.00035 7.19718 7.91277 7.96198 8.26245 8.68789 9.47762 10.88545 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024156 B = 0.003664 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.852996 B = 7639.611609 C = 8123.998112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.133 4.133 3 C 0.144 3.856 4 H 0.106 0.894 5 C 0.521 3.479 6 O -0.535 6.535 7 N -0.601 5.601 8 C 0.104 3.896 9 C -0.167 4.167 10 C 0.100 3.900 11 C 0.102 3.898 12 N -1.009 6.009 13 S 2.587 3.413 14 O -0.962 6.962 15 O -0.954 6.954 16 C -0.581 4.581 17 C 0.016 3.984 18 C -0.601 4.601 19 H 0.056 0.944 20 C 0.017 3.983 21 N -0.905 5.905 22 Si 1.075 2.925 23 H -0.286 1.286 24 H -0.282 1.282 25 H -0.287 1.287 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.113 15.226 -14.128 21.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C 0.035 3.965 4 H 0.124 0.876 5 C 0.308 3.692 6 O -0.412 6.412 7 N -0.334 5.334 8 C -0.019 4.019 9 C -0.226 4.226 10 C -0.025 4.025 11 C -0.023 4.023 12 N -0.846 5.846 13 S 2.687 3.313 14 O -0.953 6.953 15 O -0.944 6.944 16 C -0.715 4.715 17 C -0.023 4.023 18 C -0.640 4.640 19 H 0.074 0.926 20 C -0.188 4.188 21 N -0.540 5.540 22 Si 0.903 3.097 23 H -0.212 1.212 24 H -0.207 1.207 25 H -0.213 1.213 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.857 13.764 -13.501 20.150 hybrid contribution -0.408 1.276 -0.895 1.611 sum -6.265 15.039 -14.396 21.741 Atomic orbital electron populations 1.21950 0.93895 1.01751 1.03743 1.22193 0.97791 0.91332 1.05892 1.21230 0.80213 0.99582 0.95448 0.87644 1.20119 0.84885 0.78241 0.85992 1.90652 1.20464 1.59757 1.70362 1.47288 1.09488 1.51005 1.25654 1.21535 1.01414 0.94947 0.83999 1.22097 1.02119 1.00733 0.97607 1.21795 0.81340 1.02601 0.96727 1.21804 0.99596 0.86970 0.93955 1.58329 1.14734 1.30451 1.81065 1.05912 0.73524 0.72965 0.78884 1.93515 1.32467 1.83469 1.85801 1.93631 1.76010 1.51836 1.72929 1.30391 1.10941 1.10107 1.20023 1.19078 0.94946 0.89927 0.98389 1.21852 1.34175 1.16354 0.91606 0.92573 1.25976 0.93707 0.92441 1.06703 1.70759 1.33779 1.33958 1.15512 0.83449 0.75924 0.76522 0.73813 1.21247 1.20740 1.21320 0.89951 0.92389 0.93004 0.88561 0.89973 0.89592 0.90600 0.91669 0.92626 0.91963 0.89327 0.91139 0.90157 0.86298 0.85915 0.85894 0.95759 0.95730 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.38 37.16 0.35 -1.71 16 2 C -0.13 -1.95 3.78 -26.73 -0.10 -2.05 16 3 C 0.14 1.86 3.19 -69.09 -0.22 1.64 16 4 H 0.11 1.15 8.11 -51.93 -0.42 0.73 16 5 C 0.52 6.80 7.06 -11.91 -0.08 6.71 16 6 O -0.54 -8.00 13.13 5.56 0.07 -7.93 16 7 N -0.60 -6.36 2.81 -175.04 -0.49 -6.86 16 8 C 0.10 0.90 5.88 -4.05 -0.02 0.87 16 9 C -0.17 -1.45 10.23 37.16 0.38 -1.07 16 10 C 0.10 0.87 6.57 -4.50 -0.03 0.84 16 11 C 0.10 1.00 6.54 -3.63 -0.02 0.98 16 12 N -1.01 -13.11 3.22 -107.90 -0.35 -13.46 16 13 S 2.59 44.13 4.90 -107.50 -0.53 43.60 16 14 O -0.96 -18.35 16.36 -57.54 -0.94 -19.29 16 15 O -0.95 -18.45 13.63 -57.54 -0.78 -19.23 16 16 C -0.58 -10.77 5.93 37.16 0.22 -10.55 16 17 C 0.02 0.39 4.29 -27.89 -0.12 0.27 16 18 C -0.60 -16.49 9.11 -34.44 -0.31 -16.81 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 21 N -0.90 -27.28 13.65 55.43 0.76 -26.53 16 22 Si 1.08 24.56 29.90 -169.99 -5.08 19.47 16 23 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 26 H 0.08 1.16 5.78 -51.93 -0.30 0.86 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.61 8.10 -51.93 -0.42 0.19 16 29 H 0.10 1.58 6.98 -51.93 -0.36 1.21 16 30 H 0.08 1.26 5.05 -51.93 -0.26 1.00 16 31 H 0.09 0.83 7.23 -51.93 -0.38 0.46 16 32 H 0.08 0.45 7.81 -51.93 -0.41 0.05 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.48 7.84 -51.93 -0.41 0.07 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.12 1.17 6.70 -51.93 -0.35 0.82 16 40 H 0.12 2.07 7.17 -51.92 -0.37 1.70 16 41 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 42 H 0.02 0.62 8.01 -51.93 -0.42 0.21 16 43 H 0.02 0.63 8.01 -51.93 -0.42 0.22 16 44 H 0.27 8.12 7.22 -40.82 -0.29 7.83 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -34.93 355.08 -9.02 -43.95 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.96 Total: 1.43 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -0.06 Total: -20.51 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.08 Total: -46.84 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -1.65 Total: -46.45 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.47 kcal Atomic # 16 Polarization: 44.13 SS G_CDS: -0.53 Total: 43.60 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.93 -9.02 -43.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494560914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.735 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds