Wall clock time and date at job start Tue Mar 31 2020 04:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47111 * 2 1 4 4 H 1.09000 * 109.56548 * 55.23533 * 3 2 1 5 5 C 1.50430 * 109.56757 * 175.59216 * 3 2 1 6 6 O 1.21285 * 118.49198 * 287.13359 * 5 3 2 7 7 N 1.33382 * 123.02355 * 107.11428 * 5 3 2 8 8 C 1.46499 * 117.70697 * 184.33917 * 7 5 3 9 9 C 1.53004 * 109.47172 * 89.99830 * 8 7 5 10 10 C 1.45646 * 124.58930 * 4.31688 * 7 5 3 11 11 C 1.53469 * 110.73921 * 337.98176 * 10 7 5 12 12 N 1.47051 * 109.56486 * 294.99699 * 3 2 1 13 13 S 1.65608 * 121.35218 * 102.89413 * 12 3 2 14 14 O 1.42102 * 104.27540 * 333.92685 * 13 12 3 15 15 O 1.42095 * 104.27707 * 206.07046 * 13 12 3 16 16 C 1.81396 * 104.44869 * 89.99845 * 13 12 3 17 17 C 1.53004 * 109.47142 * 180.02562 * 16 13 12 18 18 C 1.50701 * 109.47211 * 180.02562 * 17 16 13 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 17 16 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 17 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 17 23 23 H 1.48504 * 109.47266 * 60.00049 * 22 20 18 24 24 H 1.48504 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47383 * 299.99456 * 22 20 18 26 26 H 1.09001 * 109.46890 * 60.00432 * 1 2 3 27 27 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47002 * 299.99833 * 1 2 3 29 29 H 1.08997 * 109.47009 * 239.99385 * 2 1 3 30 30 H 1.09001 * 109.46890 * 119.99568 * 2 1 3 31 31 H 1.08999 * 109.47199 * 209.99647 * 8 7 5 32 32 H 1.09007 * 109.47179 * 330.00132 * 8 7 5 33 33 H 1.09007 * 109.46822 * 60.00083 * 9 8 7 34 34 H 1.08998 * 109.47416 * 180.02562 * 9 8 7 35 35 H 1.08992 * 109.47131 * 300.00298 * 9 8 7 36 36 H 1.09004 * 109.21786 * 98.43266 * 10 7 5 37 37 H 1.09002 * 109.22026 * 217.81065 * 10 7 5 38 38 H 1.09001 * 109.84558 * 287.31682 * 11 10 7 39 39 H 1.09002 * 109.84017 * 166.50651 * 11 10 7 40 40 H 1.09000 * 109.47615 * 59.99959 * 16 13 12 41 41 H 1.09007 * 109.47380 * 299.99639 * 16 13 12 42 42 H 1.09000 * 109.47211 * 59.99329 * 17 16 13 43 43 H 1.09007 * 109.46376 * 299.99872 * 17 16 13 44 44 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6096 1.9819 0.8437 5 6 3.5404 1.4464 0.1089 6 8 4.0439 1.1601 1.1746 7 7 4.3426 1.7500 -0.9125 8 6 5.7873 1.6232 -0.7051 9 6 6.2347 0.2098 -1.0832 10 6 3.8830 2.1981 -2.2199 11 6 2.4295 1.7691 -2.4615 12 7 1.6522 2.1020 -1.2558 13 16 0.3881 3.1703 -1.3133 14 8 -0.4520 2.7775 -0.2366 15 8 -0.0656 3.1043 -2.6583 16 6 1.1438 4.7843 -0.9749 17 6 0.0643 5.8683 -1.0002 18 6 0.6922 7.2092 -0.7197 19 1 1.7549 7.2810 -0.5409 20 6 -0.0909 8.3434 -0.6853 21 7 -1.3850 8.2559 -0.9028 22 14 0.6862 10.0045 -0.3299 23 1 1.7075 10.3049 -1.3653 24 1 -0.3623 11.0559 -0.3498 25 1 1.3312 9.9733 1.0073 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 6.3090 2.3486 -1.3293 32 1 6.0217 1.8103 0.3429 33 1 6.0004 0.0227 -2.1312 34 1 7.3095 0.1153 -0.9285 35 1 5.7130 -0.5157 -0.4591 36 1 3.9518 3.2848 -2.2713 37 1 4.5167 1.7617 -2.9920 38 1 2.3858 0.6951 -2.6423 39 1 2.0237 2.3041 -3.3201 40 1 1.8944 5.0007 -1.7352 41 1 1.6163 4.7655 0.0072 42 1 -0.6860 5.6517 -0.2398 43 1 -0.4086 5.8871 -1.9822 44 1 -1.9360 9.0538 -0.8782 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494560916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:30 Heat of formation + Delta-G solvation = -109.588616 kcal Electronic energy + Delta-G solvation = -26554.803358 eV Core-core repulsion = 22827.316465 eV Total energy + Delta-G solvation = -3727.486893 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81099 -37.12559 -36.89458 -36.13505 -35.51406 -33.94337 -32.88588 -31.20939 -30.93406 -29.43845 -26.72628 -25.65478 -24.16749 -23.27417 -21.78745 -21.51228 -19.42042 -18.15889 -17.85525 -17.55019 -16.71280 -16.44445 -15.78484 -15.66104 -15.44156 -14.82907 -14.59279 -14.37572 -14.23147 -13.97662 -13.53852 -13.36681 -12.99435 -12.74584 -12.55008 -12.50207 -12.30701 -12.09978 -11.95113 -11.83310 -11.80286 -11.63423 -11.40006 -11.24523 -11.19483 -11.09895 -11.00466 -10.88340 -10.50677 -10.43233 -10.21683 -9.74824 -9.34771 -9.02262 -8.84974 -8.53348 -6.15653 -4.21619 0.58932 2.41980 2.64410 2.88900 3.25246 3.30335 3.32017 4.13096 4.19082 4.33356 4.38344 4.43842 4.72997 4.80596 4.84046 4.91091 4.95905 5.08382 5.13077 5.15865 5.19483 5.30309 5.37973 5.48462 5.49589 5.57807 5.62072 5.70234 5.73300 5.82382 5.90396 5.93828 6.08968 6.15507 6.37019 6.41168 6.46355 7.22202 7.24015 7.30001 7.76865 7.96129 8.13217 8.81361 9.43472 10.95293 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.004280 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.212731 B = 6541.060639 C = 7510.275519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.147 3.853 4 H 0.127 0.873 5 C 0.519 3.481 6 O -0.544 6.544 7 N -0.598 5.598 8 C 0.099 3.901 9 C -0.164 4.164 10 C 0.094 3.906 11 C 0.106 3.894 12 N -1.007 6.007 13 S 2.587 3.413 14 O -0.952 6.952 15 O -0.959 6.959 16 C -0.588 4.588 17 C 0.030 3.970 18 C -0.522 4.522 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.390 -16.485 -3.367 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C 0.037 3.963 4 H 0.145 0.855 5 C 0.305 3.695 6 O -0.421 6.421 7 N -0.331 5.331 8 C -0.024 4.024 9 C -0.223 4.223 10 C -0.030 4.030 11 C -0.020 4.020 12 N -0.843 5.843 13 S 2.686 3.314 14 O -0.942 6.942 15 O -0.950 6.950 16 C -0.722 4.722 17 C -0.010 4.010 18 C -0.561 4.561 19 H 0.079 0.921 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.200 1.200 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.542 -16.793 -3.015 20.599 hybrid contribution 1.004 1.387 0.150 1.719 sum 12.546 -15.405 -2.865 20.073 Atomic orbital electron populations 1.21774 0.93701 1.01360 1.03592 1.21729 0.97731 0.93508 1.02972 1.21177 0.90450 0.96871 0.87759 0.85516 1.20275 0.89507 0.76349 0.83371 1.90721 1.75557 1.48948 1.26873 1.47216 1.07014 1.66224 1.12635 1.21542 0.79975 0.97306 1.03563 1.22089 1.01451 0.97184 1.01550 1.21976 0.96105 1.00569 0.84376 1.21840 0.89393 1.02743 0.88044 1.58452 1.52650 1.59450 1.13737 1.05946 0.74141 0.76672 0.74603 1.93573 1.63280 1.81043 1.56303 1.93542 1.78430 1.86643 1.36343 1.30504 1.12822 1.18404 1.10462 1.18963 0.91308 0.91772 0.98909 1.20942 0.94500 0.90772 1.49885 0.92132 1.25053 0.94868 0.99518 0.94916 1.69937 1.04540 1.29820 1.48505 0.86532 0.78904 0.82881 0.78975 1.20072 1.21015 1.20050 0.92897 0.92633 0.90937 0.91480 0.90018 0.90427 0.89297 0.92616 0.91588 0.92294 0.90690 0.89412 0.90024 0.86685 0.86310 0.86307 0.94793 0.94871 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.56 37.16 0.32 -1.51 16 2 C -0.12 -1.36 5.50 -26.73 -0.15 -1.51 16 3 C 0.15 1.88 2.36 -68.91 -0.16 1.71 16 4 H 0.13 1.72 7.48 -51.93 -0.39 1.33 16 5 C 0.52 6.76 6.83 -11.74 -0.08 6.68 16 6 O -0.54 -8.62 16.18 5.55 0.09 -8.53 16 7 N -0.60 -6.22 2.81 -174.58 -0.49 -6.71 16 8 C 0.10 0.88 5.92 -4.04 -0.02 0.85 16 9 C -0.16 -1.23 10.23 37.16 0.38 -0.85 16 10 C 0.09 0.77 6.51 -4.26 -0.03 0.74 16 11 C 0.11 1.00 6.37 -3.38 -0.02 0.98 16 12 N -1.01 -12.82 2.43 -107.45 -0.26 -13.08 16 13 S 2.59 43.87 4.94 -107.50 -0.53 43.34 16 14 O -0.95 -18.19 14.46 -57.54 -0.83 -19.03 16 15 O -0.96 -18.29 16.70 -57.54 -0.96 -19.25 16 16 C -0.59 -10.94 6.12 37.16 0.23 -10.71 16 17 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 18 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 22 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H 0.05 0.74 6.43 -51.93 -0.33 0.40 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.98 7.78 -51.93 -0.40 0.58 16 29 H 0.07 0.67 7.33 -51.93 -0.38 0.29 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.53 8.01 -51.93 -0.42 0.12 16 32 H 0.09 0.95 7.10 -51.93 -0.37 0.58 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 38 H 0.08 0.65 7.38 -51.93 -0.38 0.27 16 39 H 0.12 1.06 7.02 -51.93 -0.36 0.69 16 40 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 41 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 42 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -34.62 363.68 -9.10 -43.72 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.23 Total: -0.54 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -0.09 Total: -15.99 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.01 Total: -45.21 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -1.70 Total: -46.80 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 43.87 SS G_CDS: -0.53 Total: 43.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.62 -9.10 -43.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494560916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.864 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds