Wall clock time and date at job start Tue Mar 31 2020 04:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47398 * 2 1 4 4 N 1.46505 * 109.47282 * 179.97438 * 3 2 1 5 5 C 1.46494 * 120.00131 * 274.99751 * 4 3 2 6 6 C 1.52997 * 109.47288 * 274.99938 * 5 4 3 7 7 C 1.52993 * 117.50066 * 243.74731 * 6 5 4 8 8 C 1.52998 * 117.50124 * 175.08521 * 6 5 4 9 9 S 1.65599 * 119.99623 * 95.00066 * 4 3 2 10 10 O 1.42096 * 106.40219 * 156.46362 * 9 4 3 11 11 O 1.42095 * 106.40773 * 23.53743 * 9 4 3 12 12 N 1.65606 * 107.21649 * 269.99780 * 9 4 3 13 13 C 1.47586 * 134.48958 * 90.00193 * 12 9 4 14 14 C 1.53949 * 86.11504 * 155.35964 * 13 12 9 15 15 O 1.42903 * 113.74102 * 269.15490 * 14 13 12 16 16 C 1.50694 * 113.74088 * 137.95266 * 14 13 12 17 17 H 1.08000 * 120.00563 * 1.92388 * 16 14 13 18 18 C 1.37885 * 119.99902 * 181.92552 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.47807 * 134.45609 * 269.87206 * 12 9 4 25 25 H 1.09004 * 109.47404 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46756 * 300.00179 * 1 2 3 27 27 H 1.08994 * 109.47065 * 60.00090 * 1 2 3 28 28 H 1.08997 * 109.46987 * 239.99529 * 2 1 3 29 29 H 1.09006 * 109.46657 * 120.00049 * 2 1 3 30 30 H 1.08997 * 109.47436 * 59.99804 * 3 2 1 31 31 H 1.09006 * 109.47257 * 299.99682 * 3 2 1 32 32 H 1.08999 * 109.46779 * 34.99898 * 5 4 3 33 33 H 1.09000 * 109.47336 * 155.00069 * 5 4 3 34 34 H 1.08998 * 115.55005 * 29.41982 * 6 5 4 35 35 H 1.09003 * 117.50108 * 0.02562 * 7 6 5 36 36 H 1.09006 * 117.50097 * 145.02037 * 7 6 5 37 37 H 1.08997 * 117.50102 * 214.98339 * 8 6 5 38 38 H 1.09005 * 117.49528 * 359.97438 * 8 6 5 39 39 H 1.08993 * 113.76952 * 41.05751 * 13 12 9 40 40 H 1.08995 * 113.86700 * 269.67100 * 13 12 9 41 41 H 0.96700 * 113.99800 * 178.07503 * 15 14 13 42 42 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.08995 * 113.77163 * 90.38156 * 24 12 9 44 44 H 1.09005 * 113.83876 * 318.91142 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2371 1.3320 1.2648 6 6 4.3830 2.7197 1.8924 7 6 5.7985 3.2783 2.0503 8 6 5.0210 2.8037 3.2805 9 16 4.3336 1.5671 -1.4278 10 8 5.6164 2.0853 -1.1036 11 8 3.4524 2.1941 -2.3495 12 7 4.5789 0.0282 -1.9882 13 6 3.8205 -0.8871 -2.8630 14 6 5.1748 -1.5555 -3.1616 15 8 5.8518 -1.0037 -4.2927 16 6 5.1152 -3.0610 -3.1896 17 1 4.1729 -3.5671 -3.0399 18 6 6.2638 -3.7925 -3.4063 19 7 7.4111 -3.1763 -3.5891 20 14 6.1900 -5.6588 -3.4403 21 1 7.5489 -6.2034 -3.6893 22 1 5.6875 -6.1581 -2.1352 23 1 5.2748 -6.0983 -4.5240 24 6 5.6469 -0.9788 -1.8146 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6768 1.9563 0.8899 31 1 1.6768 1.9563 -0.8901 32 1 3.6894 0.6809 1.9460 33 1 5.2254 0.9125 1.0770 34 1 3.5859 3.4263 1.6614 35 1 6.6259 2.6574 1.7067 36 1 5.9327 4.3526 1.9235 37 1 4.6440 3.5658 3.9625 38 1 5.3364 1.8702 3.7467 39 1 3.3721 -0.3977 -3.7274 40 1 3.1217 -1.5302 -2.3282 41 1 6.7162 -1.4010 -4.4661 42 1 8.2192 -3.6910 -3.7412 43 1 5.4863 -1.6483 -0.9696 44 1 6.6539 -0.5625 -1.8437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526325090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:53 Heat of formation + Delta-G solvation = -71.474004 kcal Electronic energy + Delta-G solvation = -26531.256616 eV Core-core repulsion = 22805.422497 eV Total energy + Delta-G solvation = -3725.834120 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.42731 -38.13543 -36.85618 -35.93244 -35.33128 -33.86265 -32.65575 -32.16694 -27.73861 -27.53273 -25.28309 -24.98417 -24.51953 -22.35520 -21.72005 -20.55339 -19.57852 -18.45722 -17.52626 -17.35506 -16.60720 -16.31138 -15.34641 -15.09770 -14.77489 -14.71124 -14.42846 -14.20904 -13.71045 -13.55237 -13.15385 -12.99156 -12.81265 -12.45846 -12.15610 -12.08157 -11.88273 -11.62432 -11.60080 -11.52240 -11.48033 -11.43689 -11.32946 -11.27409 -11.08358 -10.80373 -10.63406 -10.52722 -10.41835 -10.24184 -9.94537 -9.32245 -8.98560 -8.73735 -8.56089 -8.02372 -6.34062 -4.44759 1.00670 3.17501 3.20897 3.24077 3.26093 3.75598 3.98222 4.20902 4.56997 4.71036 4.77368 4.88949 4.94013 4.98582 4.99434 5.13717 5.26918 5.32728 5.44906 5.50721 5.57356 5.62814 5.66850 5.78529 5.88487 5.93848 5.99685 6.01468 6.08869 6.10872 6.19871 6.21567 6.29878 6.33494 6.41117 6.60156 6.79706 6.92187 7.03502 7.55172 7.68553 7.88464 8.57649 9.25743 9.50406 10.72248 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014643 B = 0.004442 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.661837 B = 6302.227698 C = 6766.305033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.117 3.883 4 N -1.009 6.009 5 C 0.159 3.841 6 C -0.174 4.174 7 C -0.169 4.169 8 C -0.179 4.179 9 S 2.788 3.212 10 O -0.975 6.975 11 O -0.985 6.985 12 N -1.033 6.033 13 C 0.131 3.869 14 C 0.245 3.755 15 O -0.573 6.573 16 C -0.537 4.537 17 H 0.070 0.930 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.906 3.094 21 H -0.285 1.285 22 H -0.275 1.275 23 H -0.274 1.274 24 C 0.107 3.893 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.392 0.608 42 H 0.273 0.727 43 H 0.075 0.925 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.146 6.141 11.682 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C -0.009 4.009 4 N -0.845 5.845 5 C 0.033 3.967 6 C -0.194 4.194 7 C -0.206 4.206 8 C -0.217 4.217 9 S 2.801 3.199 10 O -0.959 6.959 11 O -0.970 6.970 12 N -0.876 5.876 13 C 0.006 3.994 14 C 0.202 3.798 15 O -0.385 6.385 16 C -0.576 4.576 17 H 0.088 0.912 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.733 3.267 21 H -0.211 1.211 22 H -0.200 1.200 23 H -0.199 1.199 24 C -0.019 4.019 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.246 0.754 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.234 7.551 11.289 15.883 hybrid contribution 0.376 -1.554 0.460 1.663 sum -7.858 5.998 11.749 15.355 Atomic orbital electron populations 1.21690 0.95247 1.01949 1.01761 1.22025 0.96153 0.97415 1.03156 1.21376 0.78900 0.96963 1.03653 1.58278 1.14750 1.89243 1.22239 1.20721 0.96536 0.94436 0.85006 1.22790 0.97563 0.99480 0.99607 1.23040 0.95032 1.01498 1.01038 1.22952 1.04864 1.03157 0.90707 1.01742 0.72843 0.73130 0.72222 1.93563 1.40294 1.77679 1.84359 1.93532 1.67360 1.74317 1.61758 1.60552 1.34308 1.30798 1.61963 1.22994 0.96650 0.88731 0.91014 1.19863 0.87022 0.90363 0.82599 1.86048 1.38359 1.65694 1.48387 1.21520 0.95142 0.90449 1.50507 0.91207 1.25074 0.94999 0.99636 0.93354 1.69406 0.99259 1.36592 1.48410 0.86425 0.77371 0.84068 0.78802 1.21067 1.20013 1.19921 1.23806 0.89667 0.86173 1.02236 0.92410 0.92855 0.92451 0.91248 0.91524 0.90626 0.89351 0.90325 0.90068 0.87745 0.88036 0.89061 0.89011 0.88731 0.91051 0.90105 0.75384 0.91655 0.90674 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.15 -1.69 6.26 -26.74 -0.17 -1.86 16 3 C 0.12 1.43 5.68 -4.04 -0.02 1.40 16 4 N -1.01 -14.59 2.84 -114.39 -0.32 -14.91 16 5 C 0.16 2.01 5.63 -4.05 -0.02 1.99 16 6 C -0.17 -2.07 6.01 -90.63 -0.54 -2.61 16 7 C -0.17 -2.05 10.18 -26.70 -0.27 -2.32 16 8 C -0.18 -1.75 10.25 -26.70 -0.27 -2.03 16 9 S 2.79 53.32 6.61 -107.50 -0.71 52.61 16 10 O -0.97 -20.74 17.08 -57.17 -0.98 -21.72 16 11 O -0.99 -21.01 16.66 -57.17 -0.95 -21.96 16 12 N -1.03 -20.87 4.18 -118.50 -0.50 -21.37 16 13 C 0.13 2.69 8.10 -2.96 -0.02 2.67 16 14 C 0.25 5.85 1.40 -90.84 -0.13 5.73 16 15 O -0.57 -14.92 13.49 -35.23 -0.48 -15.40 16 16 C -0.54 -13.26 8.61 -34.44 -0.30 -13.56 16 17 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 19 N -0.90 -22.86 11.20 55.43 0.62 -22.23 16 20 Si 0.91 19.31 29.54 -169.99 -5.02 14.29 16 21 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 C 0.11 2.32 8.38 -2.84 -0.02 2.30 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.91 6.98 -51.93 -0.36 0.55 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 31 H 0.09 1.17 6.92 -51.93 -0.36 0.82 16 32 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 33 H 0.08 1.12 7.34 -51.93 -0.38 0.73 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.10 1.35 8.03 -51.93 -0.42 0.93 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.08 1.45 7.23 -51.93 -0.38 1.07 16 41 H 0.39 10.29 6.60 45.56 0.30 10.59 16 42 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 43 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 44 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -29.35 373.66 -10.84 -40.19 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -6.63 Total: 12.51 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -1.50 Total: -7.63 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.20 Total: -58.51 kcal Atomic # 8 Polarization: -56.68 SS G_CDS: -2.40 Total: -59.08 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Atomic # 16 Polarization: 53.32 SS G_CDS: -0.71 Total: 52.61 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.35 -10.84 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526325090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.285 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds