Wall clock time and date at job start Tue Mar 31 2020 05:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.69926 * 2 1 4 4 C 1.53191 * 109.58693 * 120.35835 * 2 1 3 5 5 C 1.53110 * 109.32864 * 174.42202 * 4 2 1 6 6 C 1.53038 * 109.50417 * 298.65567 * 5 4 2 7 7 C 1.53198 * 109.33748 * 61.35100 * 6 5 4 8 8 N 1.46929 * 109.58312 * 239.64873 * 2 1 3 9 9 S 1.65596 * 120.63351 * 6.58084 * 8 2 1 10 10 O 1.42102 * 106.40188 * 195.34801 * 9 8 2 11 11 O 1.42105 * 106.39902 * 328.26431 * 9 8 2 12 12 N 1.65592 * 107.21730 * 81.80673 * 9 8 2 13 13 C 1.47429 * 125.64795 * 95.02111 * 12 9 8 14 14 C 1.54905 * 104.83074 * 204.08702 * 13 12 9 15 15 C 1.55158 * 101.58623 * 322.98947 * 14 13 12 16 16 O 1.42899 * 110.72021 * 277.14367 * 15 14 13 17 17 C 1.50695 * 110.72365 * 154.04140 * 15 14 13 18 18 H 1.08003 * 120.00046 * 241.45885 * 17 15 14 19 19 C 1.37870 * 120.00215 * 61.45537 * 17 15 14 20 20 N 1.31520 * 119.99877 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 120.00378 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47290 * 89.99802 * 21 19 17 23 23 H 1.48502 * 109.47352 * 209.99681 * 21 19 17 24 24 H 1.48504 * 109.46940 * 330.00053 * 21 19 17 25 25 C 1.47019 * 125.65156 * 274.70558 * 12 9 8 26 26 H 1.09000 * 109.46603 * 188.68184 * 1 2 3 27 27 H 1.08997 * 109.47175 * 308.68230 * 1 2 3 28 28 H 1.08996 * 109.47053 * 68.68394 * 1 2 3 29 29 H 1.09001 * 109.49425 * 294.37124 * 4 2 1 30 30 H 1.08988 * 109.49873 * 54.43903 * 4 2 1 31 31 H 1.08997 * 109.50296 * 178.62737 * 5 4 2 32 32 H 1.09008 * 109.44950 * 58.64980 * 5 4 2 33 33 H 1.08996 * 109.49588 * 301.38330 * 6 5 4 34 34 H 1.08994 * 109.49606 * 181.31411 * 6 5 4 35 35 H 1.08992 * 109.58715 * 65.13162 * 7 6 5 36 36 H 1.09005 * 109.58373 * 185.42311 * 7 6 5 37 37 H 1.08993 * 110.36556 * 322.92685 * 13 12 9 38 38 H 1.09002 * 110.36532 * 85.14253 * 13 12 9 39 39 H 1.09006 * 111.00328 * 81.06478 * 14 13 12 40 40 H 1.09001 * 111.00731 * 204.91343 * 14 13 12 41 41 H 0.96710 * 113.99431 * 298.53789 * 16 15 14 42 42 H 0.97000 * 120.00255 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.88361 * 298.40374 * 25 12 9 44 44 H 1.09001 * 109.88074 * 59.56184 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5682 -0.8483 1.1704 6 6 3.9570 -1.6657 -0.0636 7 6 3.4651 -0.9468 -1.3239 8 7 2.0225 -0.6995 -1.1946 9 16 0.9717 -1.2000 -2.3725 10 8 1.6842 -2.1296 -3.1772 11 8 -0.2476 -1.5159 -1.7146 12 7 0.6572 0.1087 -3.3371 13 6 1.3529 0.4359 -4.5951 14 6 1.1678 1.9645 -4.7646 15 6 -0.2743 2.1651 -4.2284 16 8 -1.2364 1.8738 -5.2440 17 6 -0.4593 3.5670 -3.7076 18 1 -0.7058 3.7290 -2.6686 19 6 -0.3140 4.6429 -4.5573 20 7 -0.0133 4.4457 -5.8224 21 14 -0.5426 6.3808 -3.9117 22 1 0.7599 6.9044 -3.4274 23 1 -1.0514 7.2511 -5.0021 24 1 -1.5182 6.3684 -2.7920 25 6 -0.3664 1.1333 -3.0843 26 1 -0.3632 -1.0159 0.1551 27 1 -0.3633 0.6423 0.8022 28 1 -0.3633 0.3736 -0.9573 29 1 1.7661 -0.1669 2.1368 30 1 1.6026 -1.7251 1.2915 31 1 3.9390 -1.3453 2.0668 32 1 4.0068 0.1471 1.0996 33 1 3.4983 -2.6528 -0.0054 34 1 5.0411 -1.7700 -0.1041 35 1 3.9903 0.0021 -1.4317 36 1 3.6541 -1.5706 -2.1976 37 1 2.4116 0.1881 -4.5186 38 1 0.8985 -0.0978 -5.4298 39 1 1.8893 2.5148 -4.1606 40 1 1.2383 2.2527 -5.8134 41 1 -1.1714 2.4441 -6.0224 42 1 0.0886 5.2027 -6.4204 43 1 -1.3553 0.6749 -3.0746 44 1 -0.1731 1.6228 -2.1298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592074411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:59 Heat of formation + Delta-G solvation = -116.861086 kcal Electronic energy + Delta-G solvation = -27355.406367 eV Core-core repulsion = 23627.604116 eV Total energy + Delta-G solvation = -3727.802251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.80605 -38.07211 -37.16243 -35.53919 -34.29729 -32.86417 -32.21306 -32.13013 -29.12558 -28.37053 -27.12634 -24.83377 -24.14126 -22.22899 -21.57119 -20.51812 -19.82896 -18.54010 -17.53433 -17.15039 -16.76803 -16.07116 -15.07750 -14.94436 -14.72888 -14.51831 -14.44374 -14.14598 -13.87759 -13.65199 -13.27462 -12.92340 -12.81166 -12.44986 -12.18825 -12.11589 -12.03407 -11.81907 -11.70626 -11.46509 -11.35596 -11.28656 -11.12112 -10.94208 -10.81821 -10.70836 -10.62718 -10.50677 -10.43389 -10.13394 -10.01114 -9.33438 -8.95450 -8.67758 -8.39947 -8.18181 -6.29138 -4.37120 0.87233 3.15278 3.17567 3.25795 3.29325 3.81285 4.24096 4.52789 4.56886 4.72684 4.80906 4.97933 5.03985 5.08908 5.29118 5.35631 5.41052 5.59234 5.62405 5.65420 5.74971 5.79080 5.86833 5.88291 5.92733 5.96417 6.04121 6.11126 6.20425 6.23752 6.30521 6.44045 6.54165 6.62402 6.77636 6.82670 6.97016 7.08839 7.34247 7.39020 7.72454 8.02919 8.64739 9.30695 9.40961 10.78261 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.004814 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.633101 B = 5814.685753 C = 6400.163963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.153 3.847 3 H 0.075 0.925 4 C -0.126 4.126 5 C -0.118 4.118 6 C -0.131 4.131 7 C 0.117 3.883 8 N -1.004 6.004 9 S 2.797 3.203 10 O -0.987 6.987 11 O -0.975 6.975 12 N -1.014 6.014 13 C 0.122 3.878 14 C -0.130 4.130 15 C 0.251 3.749 16 O -0.585 6.585 17 C -0.535 4.535 18 H 0.063 0.937 19 C 0.073 3.927 20 N -0.895 5.895 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.134 3.866 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.381 0.619 42 H 0.268 0.732 43 H 0.064 0.936 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.713 -7.446 10.125 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.047 3.953 3 H 0.093 0.907 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.170 4.170 7 C -0.008 4.008 8 N -0.844 5.844 9 S 2.809 3.191 10 O -0.972 6.972 11 O -0.959 6.959 12 N -0.856 5.856 13 C -0.003 4.003 14 C -0.170 4.170 15 C 0.209 3.791 16 O -0.394 6.394 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.729 3.271 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.197 1.197 25 C 0.009 3.991 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.231 0.769 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.217 -8.783 10.322 15.355 hybrid contribution 0.381 1.892 -0.073 1.931 sum 7.598 -6.891 10.249 14.500 Atomic orbital electron populations 1.22880 0.92797 1.05209 1.03841 1.20994 0.94596 0.95582 0.84087 0.90717 1.21950 0.95841 1.01339 0.97411 1.21497 0.95928 1.00443 0.97652 1.21863 1.00790 0.99443 0.94913 1.21409 0.79956 1.00513 0.98966 1.58325 1.18077 1.74047 1.33912 1.01444 0.73114 0.72610 0.71935 1.93530 1.74650 1.60051 1.68921 1.93663 1.44823 1.83328 1.74105 1.58860 1.47678 1.43895 1.35141 1.22077 0.94508 0.99004 0.84708 1.23281 1.00401 0.90464 1.02869 1.19468 0.84717 0.90713 0.84155 1.86142 1.58592 1.62582 1.32083 1.21515 1.48945 0.90323 0.96559 0.91860 1.24981 0.93580 0.99606 0.94837 1.69704 1.47842 1.31907 1.03927 0.86444 0.78461 0.83491 0.78705 1.20576 1.21046 1.19713 1.21904 0.89607 0.88259 0.99325 0.88809 0.91478 0.90843 0.90928 0.91448 0.91955 0.91750 0.91626 0.90930 0.91477 0.88949 0.92628 0.92133 0.91680 0.89644 0.76859 0.92234 0.91815 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 7.56 37.16 0.28 -2.41 16 2 C 0.15 1.97 3.52 -67.60 -0.24 1.73 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.31 5.37 -26.58 -0.14 -1.45 16 5 C -0.12 -1.07 5.89 -26.65 -0.16 -1.23 16 6 C -0.13 -1.28 6.08 -26.61 -0.16 -1.44 16 7 C 0.12 1.41 6.50 -3.70 -0.02 1.38 16 8 N -1.00 -14.29 3.35 -106.46 -0.36 -14.65 16 9 S 2.80 49.52 5.90 -107.50 -0.63 48.88 16 10 O -0.99 -19.19 16.08 -57.17 -0.92 -20.11 16 11 O -0.98 -18.70 12.98 -57.17 -0.74 -19.45 16 12 N -1.01 -19.44 3.75 -111.42 -0.42 -19.86 16 13 C 0.12 2.34 6.93 -2.53 -0.02 2.32 16 14 C -0.13 -2.81 5.47 -24.58 -0.13 -2.94 16 15 C 0.25 5.91 0.84 -89.93 -0.08 5.84 16 16 O -0.59 -14.62 13.06 -35.23 -0.46 -15.08 16 17 C -0.53 -13.52 8.23 -34.45 -0.28 -13.80 16 18 H 0.06 1.58 7.58 -52.48 -0.40 1.18 16 19 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 20 N -0.89 -22.64 10.67 55.43 0.59 -22.05 16 21 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 C 0.13 2.81 5.10 -3.06 -0.02 2.80 16 26 H 0.09 1.42 6.47 -51.93 -0.34 1.09 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.20 3.01 -51.93 -0.16 1.05 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.73 8.12 -51.94 -0.42 0.31 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.16 6.76 -51.93 -0.35 0.81 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.41 8.04 -51.93 -0.42 0.99 16 40 H 0.09 1.93 7.53 -51.93 -0.39 1.54 16 41 H 0.38 9.52 7.46 45.56 0.34 9.86 16 42 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 43 H 0.06 1.39 8.07 -51.93 -0.42 0.97 16 44 H 0.07 1.38 6.11 -51.93 -0.32 1.06 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -28.59 342.29 -10.09 -38.69 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.23 Total: 11.18 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.06 Total: -7.48 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.18 Total: -56.55 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -2.12 Total: -54.63 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 49.52 SS G_CDS: -0.63 Total: 48.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.59 -10.09 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.172 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds