Wall clock time and date at job start Tue Mar 31 2020 05:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.70567 * 2 1 4 4 C 1.53623 * 109.66542 * 120.59458 * 2 1 3 5 5 C 1.53038 * 109.24369 * 174.54707 * 4 2 1 6 6 C 1.53042 * 109.53869 * 298.51535 * 5 4 2 7 7 C 1.53185 * 109.31388 * 61.36184 * 6 5 4 8 8 N 1.46925 * 109.58456 * 239.64587 * 2 1 3 9 9 S 1.65602 * 120.63286 * 6.62939 * 8 2 1 10 10 O 1.42096 * 106.40144 * 198.88630 * 9 8 2 11 11 O 1.42097 * 106.39850 * 331.80437 * 9 8 2 12 12 N 1.65592 * 107.21873 * 85.34525 * 9 8 2 13 13 C 1.47025 * 125.65181 * 95.08127 * 12 9 8 14 14 C 1.54316 * 107.27473 * 181.02054 * 13 12 9 15 15 C 1.55159 * 102.94122 * 22.19301 * 14 13 12 16 16 O 1.42900 * 111.00602 * 82.57368 * 15 14 13 17 17 C 1.50705 * 111.00537 * 206.42479 * 15 14 13 18 18 H 1.07999 * 120.00651 * 118.54136 * 17 15 14 19 19 C 1.37886 * 119.99603 * 298.54790 * 17 15 14 20 20 N 1.31513 * 120.00267 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 119.99818 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47017 * 89.99931 * 21 19 17 23 23 H 1.48491 * 109.47162 * 209.99825 * 21 19 17 24 24 H 1.48507 * 109.47224 * 329.99989 * 21 19 17 25 25 C 1.47427 * 125.64959 * 274.76714 * 12 9 8 26 26 H 1.08996 * 109.47393 * 188.86229 * 1 2 3 27 27 H 1.08998 * 109.47294 * 308.86043 * 1 2 3 28 28 H 1.09006 * 109.47409 * 68.86063 * 1 2 3 29 29 H 1.08996 * 109.63641 * 54.55826 * 4 2 1 30 30 H 1.09001 * 109.42935 * 294.41785 * 4 2 1 31 31 H 1.08997 * 109.46197 * 178.48594 * 5 4 2 32 32 H 1.09007 * 109.44638 * 58.52468 * 5 4 2 33 33 H 1.09004 * 109.49064 * 301.40830 * 6 5 4 34 34 H 1.09001 * 109.52591 * 181.33258 * 6 5 4 35 35 H 1.09002 * 109.58624 * 185.58136 * 7 6 5 36 36 H 1.09000 * 109.70759 * 65.22590 * 7 6 5 37 37 H 1.09000 * 109.88005 * 300.44100 * 13 12 9 38 38 H 1.09003 * 109.88087 * 61.59940 * 13 12 9 39 39 H 1.08996 * 110.72142 * 140.55340 * 14 13 12 40 40 H 1.08999 * 110.72248 * 263.82740 * 14 13 12 41 41 H 0.96702 * 114.00283 * 61.44793 * 16 15 14 42 42 H 0.96997 * 120.00246 * 179.97438 * 20 19 17 43 43 H 1.08994 * 110.37100 * 274.75384 * 25 12 9 44 44 H 1.09002 * 110.36376 * 37.07237 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0469 -0.7363 1.2452 5 6 3.5711 -0.8499 1.1676 6 6 3.9614 -1.6627 -0.0690 7 6 3.4656 -0.9419 -1.3264 8 7 2.0224 -0.6995 -1.1945 9 16 0.9718 -1.1991 -2.3730 10 8 1.6562 -2.1902 -3.1269 11 8 -0.2722 -1.4346 -1.7279 12 7 0.7340 0.0833 -3.3934 13 6 1.4636 0.3283 -4.6461 14 6 0.9242 1.6465 -5.2402 15 6 0.3200 2.3633 -4.0038 16 8 1.3321 3.0486 -3.2636 17 6 -0.7810 3.3081 -4.4117 18 1 -1.7863 3.1552 -4.0479 19 6 -0.5048 4.3678 -5.2495 20 7 0.7195 4.5543 -5.6923 21 14 -1.8695 5.5386 -5.7557 22 1 -1.9521 6.6542 -4.7791 23 1 -1.5788 6.0834 -7.1061 24 1 -3.1626 4.8088 -5.7841 25 6 -0.2488 1.1649 -3.1995 26 1 -0.3634 -1.0153 0.1583 27 1 -0.3634 0.6448 0.8002 28 1 -0.3634 0.3706 -0.9585 29 1 1.6096 -1.7337 1.2889 30 1 1.7688 -0.1771 2.1386 31 1 3.9442 -1.3480 2.0624 32 1 4.0063 0.1472 1.0989 33 1 3.5060 -2.6515 -0.0129 34 1 5.0460 -1.7636 -0.1112 35 1 3.6531 -1.5636 -2.2019 36 1 3.9874 0.0089 -1.4349 37 1 2.5300 0.4229 -4.4416 38 1 1.2890 -0.4913 -5.3432 39 1 1.7343 2.2358 -5.6698 40 1 0.1539 1.4471 -5.9851 41 1 1.7830 3.7428 -3.7634 42 1 0.9137 5.2996 -6.2820 43 1 -1.2214 0.8688 -3.5923 44 1 -0.3275 1.4210 -2.1429 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592074414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:01 Heat of formation + Delta-G solvation = -113.713629 kcal Electronic energy + Delta-G solvation = -27427.668785 eV Core-core repulsion = 23700.003017 eV Total energy + Delta-G solvation = -3727.665767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.72896 -38.04024 -37.15574 -35.53148 -34.24382 -32.79975 -32.22229 -32.04878 -29.18573 -28.32564 -27.09314 -24.83816 -24.06641 -22.17311 -21.48767 -20.46269 -19.84029 -18.54444 -17.51902 -17.04653 -16.81770 -15.99578 -14.99701 -14.91830 -14.80944 -14.39048 -14.27792 -14.26385 -13.90288 -13.56046 -13.28698 -12.89577 -12.80545 -12.45632 -12.39190 -12.12357 -11.90027 -11.80244 -11.72222 -11.40291 -11.29679 -11.17092 -11.06157 -10.90869 -10.79550 -10.65282 -10.63982 -10.46492 -10.44312 -10.01826 -9.94511 -9.31329 -8.87955 -8.68258 -8.33290 -8.20627 -6.28587 -4.36568 0.92440 3.18339 3.19610 3.27140 3.30779 3.85809 4.25523 4.56443 4.62068 4.78060 4.86094 4.97818 5.09372 5.14097 5.36099 5.40734 5.44482 5.64957 5.69534 5.70401 5.77675 5.86656 5.91017 5.91875 5.96322 6.00359 6.03433 6.09863 6.23512 6.28089 6.31542 6.42030 6.55863 6.71268 6.82430 6.85661 6.97058 7.13143 7.34617 7.38691 7.73420 8.03650 8.65964 9.30224 9.38525 10.78632 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021499 B = 0.004445 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.089603 B = 6297.063905 C = 6479.731628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.154 3.846 3 H 0.077 0.923 4 C -0.126 4.126 5 C -0.118 4.118 6 C -0.130 4.130 7 C 0.119 3.881 8 N -1.001 6.001 9 S 2.796 3.204 10 O -0.989 6.989 11 O -0.976 6.976 12 N -1.012 6.012 13 C 0.125 3.875 14 C -0.132 4.132 15 C 0.252 3.748 16 O -0.583 6.583 17 C -0.537 4.537 18 H 0.064 0.936 19 C 0.074 3.926 20 N -0.895 5.895 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.132 3.868 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.380 0.620 42 H 0.267 0.733 43 H 0.072 0.928 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 -8.057 9.399 13.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.048 3.952 3 H 0.095 0.905 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.169 4.169 7 C -0.007 4.007 8 N -0.840 5.840 9 S 2.808 3.192 10 O -0.974 6.974 11 O -0.960 6.960 12 N -0.853 5.853 13 C -0.001 4.001 14 C -0.172 4.172 15 C 0.210 3.790 16 O -0.391 6.391 17 C -0.575 4.575 18 H 0.082 0.918 19 C -0.129 4.129 20 N -0.534 5.534 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C 0.008 3.992 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.229 0.771 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.301 -9.325 9.711 14.469 hybrid contribution -0.231 1.514 -0.814 1.734 sum 5.071 -7.811 8.897 12.880 Atomic orbital electron populations 1.22870 0.92793 1.04737 1.03749 1.21090 0.94565 0.95709 0.83870 0.90508 1.22017 0.95844 1.01164 0.97489 1.21484 0.95950 1.00510 0.97581 1.21857 1.00731 0.99394 0.94957 1.21385 0.80006 1.00491 0.98788 1.58236 1.17986 1.73955 1.33859 1.01486 0.73240 0.72630 0.71846 1.93523 1.75791 1.56816 1.71234 1.93691 1.43169 1.84926 1.74262 1.58852 1.48990 1.42716 1.34787 1.21766 0.94837 0.99332 0.84138 1.23155 1.01228 0.92928 0.99866 1.19636 0.86128 0.87592 0.85608 1.86093 1.54451 1.53968 1.44583 1.21491 0.95433 1.11307 1.29284 0.91756 1.24979 0.95914 0.97261 0.94764 1.69717 1.18967 1.30668 1.34036 0.86448 0.82029 0.80862 0.77801 1.20472 1.21125 1.19718 1.22299 0.90550 0.85870 1.00496 0.89199 0.91836 0.90581 0.91564 0.90998 0.92019 0.91699 0.91680 0.90964 0.89201 0.91374 0.93091 0.92911 0.89788 0.91515 0.77052 0.92285 0.90943 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 7.55 37.16 0.28 -2.44 16 2 C 0.15 2.10 3.53 -67.38 -0.24 1.87 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 4 C -0.13 -1.38 5.39 -26.39 -0.14 -1.52 16 5 C -0.12 -1.15 5.88 -26.69 -0.16 -1.31 16 6 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 7 C 0.12 1.53 6.49 -3.71 -0.02 1.51 16 8 N -1.00 -15.01 3.34 -106.24 -0.35 -15.36 16 9 S 2.80 50.04 5.92 -107.50 -0.64 49.41 16 10 O -0.99 -19.36 16.15 -57.17 -0.92 -20.28 16 11 O -0.98 -18.58 12.67 -57.17 -0.72 -19.31 16 12 N -1.01 -19.43 3.75 -111.29 -0.42 -19.85 16 13 C 0.12 2.39 6.94 -3.07 -0.02 2.36 16 14 C -0.13 -2.85 5.38 -24.90 -0.13 -2.99 16 15 C 0.25 5.83 0.87 -89.50 -0.08 5.76 16 16 O -0.58 -13.87 13.17 -35.23 -0.46 -14.33 16 17 C -0.54 -13.59 8.27 -34.43 -0.28 -13.87 16 18 H 0.06 1.62 7.79 -52.49 -0.41 1.21 16 19 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 20 N -0.89 -22.58 10.76 55.43 0.60 -21.98 16 21 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 25 C 0.13 2.75 5.82 -2.41 -0.01 2.74 16 26 H 0.09 1.38 6.55 -51.93 -0.34 1.04 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.29 2.98 -51.93 -0.15 1.13 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.20 6.82 -51.93 -0.35 0.84 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.89 7.55 -51.93 -0.39 1.50 16 40 H 0.07 1.47 8.03 -51.93 -0.42 1.06 16 41 H 0.38 9.19 7.57 45.56 0.34 9.54 16 42 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 43 H 0.07 1.49 8.03 -51.93 -0.42 1.07 16 44 H 0.07 1.40 5.57 -51.93 -0.29 1.11 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -28.07 342.86 -10.06 -38.13 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.21 Total: 11.23 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -1.07 Total: -7.66 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.18 Total: -57.19 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -2.11 Total: -53.92 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 50.04 SS G_CDS: -0.64 Total: 49.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.07 -10.06 -38.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.583 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds