Wall clock time and date at job start Tue Mar 31 2020 05:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.70532 * 2 1 4 4 C 1.52761 * 109.51131 * 239.87912 * 2 1 3 5 5 C 1.53032 * 109.38625 * 185.70591 * 4 2 1 6 6 C 1.53043 * 109.53745 * 61.24200 * 5 4 2 7 7 C 1.53192 * 109.31425 * 298.63687 * 6 5 4 8 8 N 1.46920 * 108.77585 * 54.63225 * 7 6 5 9 9 S 1.65607 * 120.63228 * 126.37122 * 8 7 6 10 10 O 1.42098 * 106.39807 * 345.02588 * 9 8 7 11 11 O 1.42099 * 106.40124 * 212.10855 * 9 8 7 12 12 N 1.65598 * 107.21557 * 98.56776 * 9 8 7 13 13 C 1.47422 * 125.64879 * 269.95625 * 12 9 8 14 14 C 1.55124 * 104.94445 * 204.04204 * 13 12 9 15 15 C 1.55151 * 101.48291 * 323.22334 * 14 13 12 16 16 O 1.42894 * 110.72272 * 276.82667 * 15 14 13 17 17 C 1.50704 * 110.71688 * 153.73361 * 15 14 13 18 18 H 1.07998 * 119.99755 * 243.56735 * 17 15 14 19 19 C 1.37884 * 119.99989 * 63.84263 * 17 15 14 20 20 N 1.31507 * 119.99688 * 359.72048 * 19 17 15 21 21 Si 1.86799 * 119.99793 * 179.72677 * 19 17 15 22 22 H 1.48499 * 109.47303 * 90.00033 * 21 19 17 23 23 H 1.48501 * 109.46753 * 209.99757 * 21 19 17 24 24 H 1.48498 * 109.47128 * 329.99599 * 21 19 17 25 25 C 1.47021 * 125.65101 * 90.00402 * 12 9 8 26 26 H 1.09007 * 109.47120 * 291.31704 * 1 2 3 27 27 H 1.08994 * 109.46949 * 51.31062 * 1 2 3 28 28 H 1.08993 * 109.47595 * 171.31653 * 1 2 3 29 29 H 1.09006 * 109.56151 * 65.67003 * 4 2 1 30 30 H 1.09004 * 109.38882 * 305.63838 * 4 2 1 31 31 H 1.09001 * 109.46313 * 301.22420 * 5 4 2 32 32 H 1.09002 * 109.46074 * 181.26233 * 5 4 2 33 33 H 1.09002 * 109.49980 * 178.67920 * 6 5 4 34 34 H 1.09004 * 109.49466 * 58.58591 * 6 5 4 35 35 H 1.08997 * 109.58261 * 294.84717 * 7 6 5 36 36 H 1.08997 * 109.58823 * 174.42101 * 7 6 5 37 37 H 1.09005 * 110.36936 * 323.01131 * 13 12 9 38 38 H 1.09002 * 110.36642 * 85.32901 * 13 12 9 39 39 H 1.08997 * 111.16201 * 205.12980 * 14 13 12 40 40 H 1.09000 * 110.93313 * 81.21928 * 14 13 12 41 41 H 0.96702 * 114.00153 * 296.16395 * 16 15 14 42 42 H 0.97002 * 119.99692 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.88200 * 59.48138 * 25 12 9 44 44 H 1.09005 * 109.88235 * 298.32165 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5638 -0.8462 -1.1726 6 6 3.9522 -1.6687 0.0582 7 6 3.4644 -0.9520 1.3211 8 7 2.0225 -0.6996 1.1945 9 16 0.9716 -1.2001 2.3725 10 8 1.6848 -2.1281 3.1784 11 8 -0.2469 -1.5181 1.7144 12 7 0.6552 0.1092 3.3356 13 6 1.4163 0.4957 4.5376 14 6 0.4243 1.3324 5.3874 15 6 -0.3529 2.1016 4.2867 16 8 0.3673 3.2668 3.8797 17 6 -1.7326 2.4708 4.7674 18 1 -2.6030 2.0605 4.2771 19 6 -1.8838 3.3369 5.8296 20 7 -0.8239 3.8364 6.4267 21 14 -3.5941 3.8005 6.4206 22 1 -4.0352 2.8392 7.4629 23 1 -3.5659 5.1711 6.9914 24 1 -4.5408 3.7599 5.2772 25 6 -0.4319 1.0784 3.1343 26 1 -0.3634 0.3736 0.9574 27 1 -0.3633 0.6424 -0.8021 28 1 -0.3634 -1.0158 -0.1551 29 1 1.7632 -0.1566 -2.1349 30 1 1.5963 -1.7170 -1.2942 31 1 4.0057 0.1475 -1.0995 32 1 3.9313 -1.3417 -2.0713 33 1 5.0363 -1.7762 0.0966 34 1 3.4903 -2.6542 -0.0023 35 1 3.9928 -0.0050 1.4310 36 1 3.6503 -1.5798 2.1925 37 1 1.7340 -0.3907 5.0868 38 1 2.2794 1.1015 4.2615 39 1 0.9538 2.0212 6.0456 40 1 -0.2427 0.6852 5.9569 41 1 0.4777 3.9252 4.5793 42 1 -0.9302 4.4460 7.1737 43 1 -1.3939 0.5665 3.1583 44 1 -0.3036 1.5861 2.1782 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592074417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:03 Heat of formation + Delta-G solvation = -117.314311 kcal Electronic energy + Delta-G solvation = -27253.317352 eV Core-core repulsion = 23525.495448 eV Total energy + Delta-G solvation = -3727.821905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.83096 -38.05544 -37.16733 -35.54412 -34.30596 -32.87225 -32.17461 -32.15872 -29.13614 -28.34581 -27.13707 -24.81676 -24.14995 -22.23794 -21.58182 -20.53614 -19.80114 -18.53084 -17.56428 -17.02525 -16.90624 -16.05931 -15.06132 -14.92489 -14.84161 -14.45496 -14.33346 -14.21398 -13.97825 -13.59875 -13.23727 -12.98032 -12.81693 -12.43877 -12.19923 -12.10043 -12.02621 -11.82096 -11.61912 -11.46880 -11.33073 -11.25864 -11.10348 -10.97107 -10.82827 -10.73454 -10.69424 -10.47982 -10.41734 -10.14334 -10.02593 -9.30349 -8.95971 -8.66354 -8.39387 -8.18225 -6.28319 -4.35620 0.87190 3.14837 3.20485 3.27958 3.32209 3.80904 4.26437 4.52498 4.56102 4.71870 4.79842 4.98426 5.03377 5.08427 5.28408 5.34743 5.43007 5.58547 5.62119 5.64525 5.74988 5.82133 5.86176 5.87752 5.94605 6.00004 6.01289 6.07818 6.20256 6.22477 6.26516 6.37066 6.55986 6.68340 6.77973 6.83248 6.97096 7.09376 7.36486 7.40045 7.74512 8.03224 8.66570 9.32045 9.41940 10.79261 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024538 B = 0.004169 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.814849 B = 6714.492384 C = 6865.443703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.154 3.846 3 H 0.073 0.927 4 C -0.127 4.127 5 C -0.118 4.118 6 C -0.131 4.131 7 C 0.117 3.883 8 N -1.004 6.004 9 S 2.797 3.203 10 O -0.987 6.987 11 O -0.975 6.975 12 N -1.013 6.013 13 C 0.116 3.884 14 C -0.130 4.130 15 C 0.251 3.749 16 O -0.587 6.587 17 C -0.537 4.537 18 H 0.065 0.935 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.134 3.866 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.383 0.617 42 H 0.268 0.732 43 H 0.073 0.927 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.857 -6.526 -11.046 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.048 3.952 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.155 4.155 6 C -0.170 4.170 7 C -0.009 4.009 8 N -0.844 5.844 9 S 2.809 3.191 10 O -0.971 6.971 11 O -0.959 6.959 12 N -0.855 5.855 13 C -0.009 4.009 14 C -0.170 4.170 15 C 0.210 3.790 16 O -0.396 6.396 17 C -0.575 4.575 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C 0.010 3.990 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.234 0.766 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.591 -7.690 -11.414 16.224 hybrid contribution -0.659 1.035 0.906 1.526 sum 7.931 -6.655 -10.508 14.752 Atomic orbital electron populations 1.22870 0.92797 1.05191 1.03818 1.20882 0.94610 0.95539 0.84126 0.90874 1.21873 0.95884 1.01417 0.97429 1.21484 0.95931 1.00411 0.97693 1.21869 1.00819 0.99437 0.94906 1.21410 0.80020 1.00457 0.98973 1.58335 1.18132 1.73986 1.33956 1.01436 0.73040 0.72645 0.71964 1.93527 1.74680 1.60116 1.68821 1.93661 1.44868 1.83339 1.74003 1.58848 1.41623 1.45653 1.39365 1.22151 0.95110 0.98451 0.85179 1.23307 0.97031 0.98250 0.98414 1.19437 0.90035 0.82326 0.87206 1.86087 1.78171 1.31909 1.43460 1.21585 0.92189 1.28212 1.15524 0.91716 1.24984 0.97510 0.95010 0.95497 1.69647 1.28809 1.31914 1.23257 0.86425 0.83860 0.77750 0.78985 1.20482 1.21067 1.19685 1.21917 0.88060 0.89220 0.99806 0.90877 0.91527 0.88786 0.90893 0.91441 0.91770 0.91939 0.90908 0.91610 0.91524 0.88921 0.91788 0.92618 0.89711 0.91565 0.76565 0.92202 0.90855 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 7.55 37.16 0.28 -2.42 16 2 C 0.15 1.99 3.50 -67.82 -0.24 1.75 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.13 -1.31 5.34 -26.84 -0.14 -1.46 16 5 C -0.12 -1.06 5.89 -26.69 -0.16 -1.22 16 6 C -0.13 -1.28 6.08 -26.61 -0.16 -1.44 16 7 C 0.12 1.40 6.51 -3.71 -0.02 1.38 16 8 N -1.00 -14.34 3.35 -106.71 -0.36 -14.70 16 9 S 2.80 49.49 5.87 -107.50 -0.63 48.86 16 10 O -0.99 -19.15 15.87 -57.17 -0.91 -20.06 16 11 O -0.97 -18.62 12.93 -57.17 -0.74 -19.36 16 12 N -1.01 -19.42 3.76 -111.30 -0.42 -19.84 16 13 C 0.12 2.22 7.10 -2.41 -0.02 2.20 16 14 C -0.13 -2.87 5.58 -24.47 -0.14 -3.00 16 15 C 0.25 5.95 0.85 -89.94 -0.08 5.87 16 16 O -0.59 -14.30 13.08 -35.23 -0.46 -14.77 16 17 C -0.54 -13.86 8.21 -34.44 -0.28 -14.14 16 18 H 0.06 1.67 7.55 -52.49 -0.40 1.27 16 19 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 20 N -0.90 -22.87 10.67 55.43 0.59 -22.28 16 21 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C 0.13 2.84 5.18 -3.07 -0.02 2.83 16 26 H 0.07 1.21 3.11 -51.92 -0.16 1.05 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 1.43 6.46 -51.93 -0.34 1.09 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.17 6.75 -51.93 -0.35 0.82 16 37 H 0.06 1.14 7.78 -51.93 -0.40 0.74 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.92 7.64 -51.93 -0.40 1.53 16 40 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 41 H 0.38 9.49 7.24 45.56 0.33 9.82 16 42 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 43 H 0.07 1.57 7.64 -51.93 -0.40 1.18 16 44 H 0.06 1.23 6.42 -51.93 -0.33 0.89 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -28.55 341.77 -10.08 -38.63 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.22 Total: 11.15 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.07 Total: -7.90 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.18 Total: -56.82 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -2.11 Total: -54.18 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 49.49 SS G_CDS: -0.63 Total: 48.86 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.55 -10.08 -38.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.685 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds