Wall clock time and date at job start Tue Mar 31 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46959 * 2 1 4 4 C 1.53002 * 109.47441 * 120.00598 * 2 1 3 5 5 C 1.52998 * 117.49697 * 8.61837 * 4 2 1 6 6 C 1.53003 * 60.00136 * 252.51420 * 5 4 2 7 7 N 1.46507 * 109.46966 * 240.00486 * 2 1 3 8 8 C 1.46499 * 119.99882 * 300.00102 * 7 2 1 9 9 S 1.65600 * 120.00172 * 119.99700 * 7 2 1 10 10 O 1.42095 * 106.40430 * 156.45801 * 9 7 2 11 11 O 1.42099 * 106.40060 * 23.54207 * 9 7 2 12 12 N 1.65598 * 107.22071 * 270.00300 * 9 7 2 13 13 C 1.47021 * 125.64577 * 269.95982 * 12 9 7 14 14 C 1.54326 * 107.27002 * 181.09010 * 13 12 9 15 15 C 1.55151 * 102.94313 * 22.19392 * 14 13 12 16 16 O 1.42901 * 111.00842 * 82.56580 * 15 14 13 17 17 C 1.50698 * 111.00641 * 206.42337 * 15 14 13 18 18 H 1.07993 * 120.00138 * 112.19363 * 17 15 14 19 19 C 1.37875 * 119.99529 * 292.19405 * 17 15 14 20 20 N 1.31514 * 120.00358 * 359.97438 * 19 17 15 21 21 Si 1.86808 * 119.99716 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47193 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47196 * 119.99989 * 21 19 17 24 24 H 1.48495 * 109.46989 * 240.00003 * 21 19 17 25 25 C 1.47421 * 125.64972 * 89.99245 * 12 9 7 26 26 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47159 * 299.99692 * 1 2 3 28 28 H 1.08994 * 109.47339 * 59.99532 * 1 2 3 29 29 H 1.08998 * 115.54789 * 154.33165 * 4 2 1 30 30 H 1.08998 * 117.50168 * 0.02562 * 5 4 2 31 31 H 1.08998 * 117.49665 * 145.02024 * 5 4 2 32 32 H 1.08994 * 117.49843 * 252.51275 * 6 5 4 33 33 H 1.09001 * 117.49644 * 107.48790 * 6 5 4 34 34 H 1.09005 * 109.46558 * 270.00013 * 8 7 2 35 35 H 1.09002 * 109.47498 * 29.99576 * 8 7 2 36 36 H 1.08998 * 109.47297 * 150.00010 * 8 7 2 37 37 H 1.08996 * 109.88310 * 300.50874 * 13 12 9 38 38 H 1.09000 * 109.88323 * 61.67269 * 13 12 9 39 39 H 1.09000 * 110.72348 * 263.82382 * 14 13 12 40 40 H 1.09003 * 110.71705 * 140.55404 * 14 13 12 41 41 H 0.96708 * 113.99322 * 67.80350 * 16 15 14 42 42 H 0.96999 * 120.00046 * 179.97438 * 20 19 17 43 43 H 1.09002 * 110.36865 * 37.00526 * 25 12 9 44 44 H 1.09001 * 110.37117 * 274.67844 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.0105 -1.4543 2.1116 6 6 1.6358 -0.1497 2.6096 7 7 2.0183 -0.6905 -1.1963 8 6 1.6643 -2.0931 -1.4282 9 16 2.9703 0.1143 -2.2864 10 8 3.7117 -0.8787 -2.9817 11 8 3.5794 1.1830 -1.5749 12 7 1.9606 0.8093 -3.3998 13 6 1.5020 0.1837 -4.6488 14 6 0.6053 1.2099 -5.3729 15 6 1.0651 2.5620 -4.7667 16 8 2.2393 3.0447 -5.4227 17 6 -0.0413 3.5836 -4.8235 18 1 -0.5022 3.9317 -3.9110 19 6 -0.4651 4.0737 -6.0405 20 7 0.0965 3.6501 -7.1517 21 14 -1.8371 5.3395 -6.1110 22 1 -2.2970 5.6484 -4.7332 23 1 -1.3338 6.5799 -6.7540 24 1 -2.9709 4.7970 -6.9018 25 6 1.3732 2.1580 -3.3032 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 3.0324 -1.1641 1.1640 30 1 -0.0301 -1.4229 1.7888 31 1 1.3254 -2.3796 2.5939 32 1 2.3621 -0.2167 3.4195 33 1 1.0065 0.7403 2.6146 34 1 2.4157 -2.7376 -0.9719 35 1 0.6904 -2.3002 -0.9848 36 1 1.6237 -2.2851 -2.5004 37 1 2.3588 -0.0666 -5.2743 38 1 0.9291 -0.7160 -4.4241 39 1 -0.4463 1.0263 -5.1529 40 1 0.7850 1.1882 -6.4478 41 1 2.0956 3.3098 -6.3416 42 1 -0.2020 3.9947 -8.0079 43 1 2.0875 2.8521 -2.8604 44 1 0.4553 2.1309 -2.7160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592074513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:15 Heat of formation + Delta-G solvation = -92.394276 kcal Electronic energy + Delta-G solvation = -26756.492361 eV Core-core repulsion = 23029.751070 eV Total energy + Delta-G solvation = -3726.741291 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.90207 -38.00854 -36.94359 -35.51631 -35.22304 -34.25228 -32.12691 -30.17136 -29.23010 -28.25887 -26.66543 -24.86839 -24.12056 -22.53041 -21.48488 -19.89443 -19.71597 -18.57979 -17.71586 -17.39294 -16.80457 -16.57345 -15.46377 -14.99021 -14.95186 -14.78595 -14.19850 -14.11694 -13.75846 -13.42642 -13.11760 -12.81023 -12.60499 -12.42145 -12.28039 -12.03587 -11.92716 -11.78175 -11.70811 -11.69806 -11.57232 -11.49365 -11.32958 -11.03538 -11.02008 -10.78239 -10.51810 -10.48848 -10.43718 -10.11779 -10.03131 -9.41260 -9.07597 -8.70012 -8.35397 -8.16551 -6.29886 -4.37941 0.84162 3.13705 3.17185 3.26664 3.30057 3.65408 3.81511 4.24225 4.46055 4.57749 4.66600 4.84145 4.85969 4.97352 5.12682 5.18113 5.30462 5.42338 5.46338 5.52915 5.61070 5.65354 5.67194 5.79830 5.82478 5.93455 5.94595 5.95825 6.02725 6.15567 6.21417 6.25059 6.42200 6.51199 6.70849 6.83959 6.93915 7.10785 7.34424 7.36366 7.73884 8.00960 8.64265 9.31423 9.51728 10.77734 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.004250 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.621932 B = 6587.173980 C = 7352.094146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.175 3.825 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.183 4.183 6 C -0.175 4.175 7 N -1.006 6.006 8 C 0.099 3.901 9 S 2.797 3.203 10 O -0.981 6.981 11 O -0.976 6.976 12 N -1.011 6.011 13 C 0.125 3.875 14 C -0.134 4.134 15 C 0.253 3.747 16 O -0.584 6.584 17 C -0.535 4.535 18 H 0.066 0.934 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.283 1.283 25 C 0.131 3.869 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.385 0.615 42 H 0.269 0.731 43 H 0.073 0.927 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 -10.394 13.004 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.068 3.932 3 H 0.121 0.879 4 C -0.178 4.178 5 C -0.220 4.220 6 C -0.212 4.212 7 N -0.844 5.844 8 C -0.047 4.047 9 S 2.807 3.193 10 O -0.965 6.965 11 O -0.960 6.960 12 N -0.852 5.852 13 C 0.000 4.000 14 C -0.174 4.174 15 C 0.211 3.789 16 O -0.394 6.394 17 C -0.574 4.574 18 H 0.084 0.916 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.209 1.209 25 C 0.007 3.993 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.237 0.763 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.122 -10.523 13.459 17.085 hybrid contribution -1.454 0.594 -0.686 1.714 sum -1.576 -9.929 12.773 16.255 Atomic orbital electron populations 1.22290 0.94881 1.02563 1.02813 1.20350 0.94272 0.96022 0.82513 0.87867 1.22632 0.99813 1.04024 0.91345 1.23141 0.99027 0.95932 1.03865 1.22958 1.03792 0.97669 0.96809 1.58153 1.70247 1.20936 1.35055 1.21337 1.01094 0.80806 1.01457 1.01455 0.73083 0.72583 0.72138 1.93562 1.68510 1.60782 1.73621 1.93574 1.73809 1.55471 1.73138 1.58789 1.66819 1.26261 1.33370 1.21754 0.97979 0.95708 0.84579 1.23175 0.97663 0.96050 1.00507 1.19558 0.83690 0.89700 0.85941 1.86099 1.35631 1.85991 1.31720 1.21548 1.18313 1.24193 0.93355 0.91621 1.24998 0.96576 0.96105 0.95369 1.69577 1.42560 1.43555 0.97953 0.86365 0.81313 0.80985 0.78274 1.19616 1.20779 1.20878 1.22153 0.96752 0.80426 0.99977 0.91694 0.91477 0.91425 0.87593 0.88016 0.89176 0.88799 0.88476 0.92827 0.91095 0.91368 0.92279 0.93605 0.91594 0.90130 0.76262 0.92129 0.90869 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 7.77 37.16 0.29 -1.41 16 2 C 0.17 2.11 3.03 -67.93 -0.21 1.90 16 3 H 0.10 1.40 6.91 -51.93 -0.36 1.04 16 4 C -0.16 -1.64 5.49 -90.62 -0.50 -2.14 16 5 C -0.18 -1.50 9.57 -26.73 -0.26 -1.76 16 6 C -0.17 -1.52 9.90 -26.73 -0.26 -1.79 16 7 N -1.01 -13.61 3.13 -114.60 -0.36 -13.97 16 8 C 0.10 1.09 9.66 59.85 0.58 1.67 16 9 S 2.80 50.16 6.30 -107.50 -0.68 49.48 16 10 O -0.98 -19.53 16.79 -57.18 -0.96 -20.49 16 11 O -0.98 -19.89 16.02 -57.18 -0.92 -20.80 16 12 N -1.01 -19.32 3.75 -111.42 -0.42 -19.74 16 13 C 0.13 2.36 6.99 -3.06 -0.02 2.34 16 14 C -0.13 -2.88 5.64 -24.90 -0.14 -3.02 16 15 C 0.25 6.04 0.89 -89.62 -0.08 5.96 16 16 O -0.58 -15.14 13.18 -35.23 -0.46 -15.61 16 17 C -0.54 -13.58 8.25 -34.44 -0.28 -13.86 16 18 H 0.07 1.63 7.77 -52.49 -0.41 1.23 16 19 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 20 N -0.90 -22.94 10.79 55.43 0.60 -22.34 16 21 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.13 2.76 6.28 -2.53 -0.02 2.74 16 26 H 0.06 0.58 5.50 -51.93 -0.29 0.29 16 27 H 0.07 0.59 7.07 -51.93 -0.37 0.22 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.10 0.78 5.85 -51.93 -0.30 0.47 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.80 7.61 -51.93 -0.40 0.41 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.63 6.43 -51.93 -0.33 0.30 16 36 H 0.07 0.77 7.79 -51.93 -0.40 0.36 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.38 8.03 -51.93 -0.42 0.96 16 40 H 0.08 1.83 7.85 -51.93 -0.41 1.42 16 41 H 0.39 10.07 6.93 45.56 0.32 10.39 16 42 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 43 H 0.07 1.61 7.78 -51.93 -0.40 1.20 16 44 H 0.07 1.25 8.01 -51.93 -0.42 0.83 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -29.78 358.40 -10.09 -39.87 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.28 Total: 11.08 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -0.99 Total: -7.65 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.18 Total: -56.05 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -2.34 Total: -56.90 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 50.16 SS G_CDS: -0.68 Total: 49.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.78 -10.09 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.521 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds