Wall clock time and date at job start Tue Mar 31 2020 05:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46865 * 2 1 4 4 C 1.52999 * 109.47042 * 240.00365 * 2 1 3 5 5 C 1.52998 * 117.50006 * 128.62619 * 4 2 1 6 6 C 1.52997 * 117.50143 * 59.99912 * 4 2 1 7 7 N 1.46497 * 109.46880 * 120.00456 * 2 1 3 8 8 C 1.46491 * 120.00435 * 60.00115 * 7 2 1 9 9 S 1.65603 * 119.99619 * 240.00002 * 7 2 1 10 10 O 1.42104 * 106.40437 * 156.46049 * 9 7 2 11 11 O 1.42101 * 106.40323 * 23.53900 * 9 7 2 12 12 N 1.65607 * 107.21842 * 270.00010 * 9 7 2 13 13 C 1.47425 * 125.64857 * 90.02486 * 12 9 7 14 14 C 1.54906 * 104.83257 * 204.09277 * 13 12 9 15 15 C 1.55158 * 101.58175 * 322.99179 * 14 13 12 16 16 O 1.42904 * 110.71791 * 276.96203 * 15 14 13 17 17 C 1.50692 * 110.72125 * 153.86681 * 15 14 13 18 18 H 1.07999 * 120.00014 * 5.08897 * 17 15 14 19 19 C 1.37874 * 120.00162 * 185.09388 * 17 15 14 20 20 N 1.31513 * 120.00268 * 183.77266 * 19 17 15 21 21 Si 1.86800 * 119.99888 * 3.76984 * 19 17 15 22 22 H 1.48502 * 109.46826 * 84.83049 * 21 19 17 23 23 H 1.48503 * 109.47305 * 204.82650 * 21 19 17 24 24 H 1.48495 * 109.47195 * 324.83036 * 21 19 17 25 25 C 1.47019 * 125.64600 * 269.71660 * 12 9 7 26 26 H 1.08998 * 109.47299 * 299.99904 * 1 2 3 27 27 H 1.09006 * 109.46970 * 60.00053 * 1 2 3 28 28 H 1.09000 * 109.47228 * 179.97438 * 1 2 3 29 29 H 1.09008 * 115.54961 * 274.32681 * 4 2 1 30 30 H 1.09001 * 117.49969 * 359.97438 * 5 4 2 31 31 H 1.08997 * 117.50520 * 145.02188 * 5 4 2 32 32 H 1.09003 * 117.50059 * 214.97958 * 6 4 2 33 33 H 1.09000 * 117.49937 * 359.97438 * 6 4 2 34 34 H 1.09000 * 109.47069 * 270.00027 * 8 7 2 35 35 H 1.09004 * 109.47181 * 30.00120 * 8 7 2 36 36 H 1.08999 * 109.47587 * 149.99864 * 8 7 2 37 37 H 1.09001 * 110.36310 * 322.93467 * 13 12 9 38 38 H 1.09001 * 110.36646 * 85.24893 * 13 12 9 39 39 H 1.09002 * 111.00602 * 81.06520 * 14 13 12 40 40 H 1.08993 * 111.00219 * 204.87874 * 14 13 12 41 41 H 0.96699 * 113.99616 * 298.54769 * 16 15 14 42 42 H 0.96999 * 120.00401 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.88635 * 298.39303 * 25 12 9 44 44 H 1.09001 * 109.88173 * 59.56587 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.0742 0.0052 -2.1116 6 6 1.6357 -0.1494 -2.6096 7 7 2.0183 -0.6907 1.1961 8 6 1.6644 -2.0932 1.4279 9 16 2.9703 0.1141 2.2862 10 8 2.8227 -0.5647 3.5259 11 8 2.6903 1.4972 2.1193 12 7 4.5437 -0.1043 1.8180 13 6 5.2968 0.7710 0.9013 14 6 6.4089 -0.1332 0.3138 15 6 6.7785 -1.0090 1.5401 16 8 7.7029 -0.3257 2.3890 17 6 7.3431 -2.3344 1.0979 18 1 7.5164 -2.5246 0.0491 19 6 7.6382 -3.3042 2.0324 20 7 8.1996 -4.4320 1.6549 21 14 7.2408 -3.0163 3.8348 22 1 5.8278 -3.3910 4.0960 23 1 8.1372 -3.8471 4.6783 24 1 7.4413 -1.5820 4.1629 25 6 5.4229 -1.1996 2.2527 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.1267 -1.8045 -1.1643 30 1 3.3909 0.9971 -1.7892 31 1 3.8416 -0.6000 -2.5942 32 1 1.4568 -0.8564 -3.4197 33 1 1.0060 0.7403 -2.6146 34 1 0.7375 -2.1444 1.9992 35 1 1.5295 -2.5969 0.4707 36 1 2.4628 -2.5820 1.9862 37 1 4.6465 1.1374 0.1070 38 1 5.7357 1.6053 1.4484 39 1 6.0243 -0.7456 -0.5019 40 1 7.2620 0.4602 -0.0146 41 1 8.5448 -0.1133 1.9633 42 1 8.4069 -5.1145 2.3123 43 1 5.5607 -1.1578 3.3331 44 1 4.9887 -2.1582 1.9690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592074517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:19 Heat of formation + Delta-G solvation = -83.575555 kcal Electronic energy + Delta-G solvation = -27380.083156 eV Core-core repulsion = 23653.724273 eV Total energy + Delta-G solvation = -3726.358882 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.67853 -38.40522 -37.04959 -35.64253 -35.29116 -34.52874 -32.44137 -30.44226 -29.63484 -28.61082 -26.50387 -24.61666 -23.95666 -22.38113 -22.10732 -20.01708 -19.84250 -18.91366 -17.96022 -17.29547 -17.18078 -16.42826 -15.50923 -15.02898 -14.91876 -14.71796 -14.32994 -14.21964 -13.92208 -13.42580 -13.10270 -12.95401 -12.75167 -12.65378 -12.50785 -12.28706 -12.25861 -12.02706 -11.90956 -11.83854 -11.62124 -11.47553 -11.39421 -11.31834 -10.95939 -10.83557 -10.61650 -10.46680 -10.27525 -10.13715 -10.09248 -9.17699 -9.01695 -8.76163 -8.51609 -8.42956 -6.25231 -4.37030 0.74749 3.00138 3.32487 3.43289 3.62860 3.65860 3.77287 4.35915 4.40580 4.52588 4.77475 4.81395 4.97815 5.01807 5.05229 5.11892 5.24550 5.26510 5.35121 5.50525 5.53041 5.58053 5.63831 5.69853 5.72502 5.82021 5.85275 5.93861 5.96144 6.01486 6.06512 6.13872 6.26081 6.35780 6.47611 6.52447 6.66221 6.71954 6.88244 7.06710 7.48132 8.17510 8.71066 8.90761 9.38622 10.84766 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.005637 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.514127 B = 4966.035336 C = 5360.636749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.176 3.824 3 H 0.096 0.904 4 C -0.165 4.165 5 C -0.176 4.176 6 C -0.175 4.175 7 N -1.002 6.002 8 C 0.094 3.906 9 S 2.794 3.206 10 O -0.975 6.975 11 O -0.981 6.981 12 N -1.012 6.012 13 C 0.129 3.871 14 C -0.140 4.140 15 C 0.219 3.781 16 O -0.573 6.573 17 C -0.549 4.549 18 H 0.080 0.920 19 C 0.090 3.910 20 N -0.886 5.886 21 Si 0.857 3.143 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.226 1.226 25 C 0.127 3.873 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.365 0.635 42 H 0.267 0.733 43 H 0.061 0.939 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 7.871 -6.965 16.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.069 3.931 3 H 0.114 0.886 4 C -0.185 4.185 5 C -0.213 4.213 6 C -0.212 4.212 7 N -0.841 5.841 8 C -0.052 4.052 9 S 2.804 3.196 10 O -0.959 6.959 11 O -0.965 6.965 12 N -0.854 5.854 13 C 0.003 3.997 14 C -0.179 4.179 15 C 0.178 3.822 16 O -0.380 6.380 17 C -0.586 4.586 18 H 0.098 0.902 19 C -0.115 4.115 20 N -0.522 5.522 21 Si 0.684 3.316 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.149 1.149 25 C 0.003 3.997 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.212 0.788 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.620 8.141 -5.661 16.847 hybrid contribution 0.407 -0.441 0.153 0.620 sum -13.213 7.699 -5.507 16.254 Atomic orbital electron populations 1.22062 0.94455 1.02624 1.02170 1.20415 0.94737 0.95371 0.82544 0.88565 1.22678 1.04421 1.00263 0.91148 1.23068 0.92516 1.02042 1.03646 1.22922 0.98465 1.03120 0.96726 1.58044 1.65928 1.22360 1.37740 1.21424 1.01192 0.80535 1.02005 1.01583 0.71722 0.73065 0.73209 1.93597 1.85781 1.75959 1.40520 1.93560 1.84356 1.31841 1.86793 1.58909 1.27694 1.37702 1.61083 1.21930 0.93699 0.92875 0.91147 1.23294 0.97201 0.97826 0.99578 1.19957 0.85786 0.91169 0.85319 1.86516 1.28570 1.79648 1.43240 1.21226 1.44841 0.96741 0.95835 0.90180 1.24962 0.92860 0.94415 0.99305 1.69916 1.40113 1.06890 1.35241 0.87329 0.78235 0.81164 0.84906 1.20387 1.22150 1.14863 1.22317 0.90615 0.87968 0.98831 0.92254 0.91464 0.91913 0.86993 0.88726 0.88319 0.88776 0.88794 0.92589 0.90819 0.90877 0.92094 0.91800 0.90335 0.90960 0.78803 0.92305 0.92109 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.03 37.16 0.34 -1.15 16 2 C 0.18 2.06 2.86 -67.93 -0.19 1.87 16 3 H 0.10 1.20 6.67 -51.93 -0.35 0.85 16 4 C -0.17 -1.75 5.15 -90.62 -0.47 -2.22 16 5 C -0.18 -1.82 10.18 -26.73 -0.27 -2.09 16 6 C -0.17 -1.52 9.74 -26.73 -0.26 -1.78 16 7 N -1.00 -14.00 3.13 -114.62 -0.36 -14.36 16 8 C 0.09 1.17 9.32 59.84 0.56 1.73 16 9 S 2.79 49.76 6.30 -107.50 -0.68 49.08 16 10 O -0.97 -20.26 16.79 -57.17 -0.96 -21.22 16 11 O -0.98 -18.37 16.29 -57.17 -0.93 -19.30 16 12 N -1.01 -18.84 3.75 -111.42 -0.42 -19.26 16 13 C 0.13 2.12 6.97 -2.53 -0.02 2.10 16 14 C -0.14 -2.44 6.22 -24.58 -0.15 -2.60 16 15 C 0.22 4.76 0.68 -89.93 -0.06 4.70 16 16 O -0.57 -12.37 10.47 -35.23 -0.37 -12.73 16 17 C -0.55 -14.08 8.72 -34.45 -0.30 -14.38 16 18 H 0.08 2.20 8.03 -52.49 -0.42 1.78 16 19 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 20 N -0.89 -25.67 13.96 55.43 0.77 -24.89 16 21 Si 0.86 21.38 23.99 -169.99 -4.08 17.30 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.23 -5.59 5.40 56.52 0.31 -5.28 16 25 C 0.13 2.77 4.51 -3.06 -0.01 2.75 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.53 7.29 -51.93 -0.38 0.16 16 28 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 29 H 0.11 1.22 6.59 -51.92 -0.34 0.88 16 30 H 0.09 0.96 7.59 -51.93 -0.39 0.57 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.73 7.61 -51.93 -0.39 0.34 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 36 H 0.07 1.01 7.79 -51.93 -0.40 0.61 16 37 H 0.06 0.84 7.68 -51.93 -0.40 0.45 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.37 6.63 9.10 45.56 0.41 7.04 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.06 1.43 5.69 -51.93 -0.30 1.14 16 44 H 0.08 1.69 7.62 -51.93 -0.40 1.30 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -32.35 354.10 -8.90 -41.25 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.28 Total: 7.52 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.94 Total: -8.71 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.00 Total: -58.51 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -2.26 Total: -53.25 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.08 Total: 17.30 kcal Atomic # 16 Polarization: 49.76 SS G_CDS: -0.68 Total: 49.08 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.35 -8.90 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.326 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds