Wall clock time and date at job start Tue Mar 31 2020 05:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 O 1.42901 * 109.47013 * 240.00199 * 2 1 3 5 5 C 1.52999 * 109.46758 * 120.00010 * 2 1 3 6 6 N 1.46496 * 115.55042 * 275.22346 * 5 2 1 7 7 C 1.34783 * 119.99988 * 293.88981 * 6 5 2 8 8 O 1.21359 * 119.99916 * 354.29670 * 7 6 5 9 9 C 1.49354 * 119.99910 * 174.29122 * 7 6 5 10 10 O 1.21372 * 120.00018 * 0.02562 * 9 7 6 11 11 N 1.34774 * 119.99907 * 180.02562 * 9 7 6 12 12 C 1.39745 * 119.99963 * 183.45273 * 11 9 7 13 13 C 1.39338 * 119.95138 * 144.82012 * 12 11 9 14 14 C 1.38475 * 120.42306 * 179.97438 * 13 12 11 15 15 C 1.37688 * 120.32730 * 0.02562 * 14 13 12 16 16 C 1.40750 * 119.89855 * 0.02562 * 15 14 13 17 17 C 1.41409 * 120.21266 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00140 * 149.06370 * 17 16 15 19 19 C 1.39932 * 120.00055 * 329.07096 * 17 16 15 20 20 N 1.30832 * 119.99614 * 350.33724 * 19 17 16 21 21 Si 1.86799 * 120.00308 * 170.34178 * 19 17 16 22 22 H 1.48489 * 109.47152 * 94.98112 * 21 19 17 23 23 H 1.48504 * 109.46896 * 214.98546 * 21 19 17 24 24 H 1.48505 * 109.46781 * 334.98106 * 21 19 17 25 25 C 1.38295 * 119.95212 * 324.54220 * 12 11 9 26 26 C 1.52995 * 117.49666 * 129.51750 * 5 2 1 27 27 C 1.53001 * 60.00131 * 252.50902 * 26 5 2 28 28 H 1.08999 * 109.46979 * 174.72465 * 1 2 3 29 29 H 1.08992 * 109.47373 * 294.73251 * 1 2 3 30 30 H 1.09007 * 109.46918 * 54.73049 * 1 2 3 31 31 H 0.96698 * 114.00088 * 299.99803 * 4 2 1 32 32 H 0.97003 * 120.00184 * 113.89355 * 6 5 2 33 33 H 0.97004 * 120.00167 * 3.44503 * 11 9 7 34 34 H 1.08004 * 119.79555 * 359.97438 * 13 12 11 35 35 H 1.08002 * 119.83865 * 180.02562 * 14 13 12 36 36 H 1.08000 * 120.05714 * 179.97438 * 15 14 13 37 37 H 0.97001 * 120.00037 * 179.97438 * 20 19 17 38 38 H 1.08003 * 120.16470 * 0.02562 * 25 12 11 39 39 H 1.09002 * 117.49720 * 359.97438 * 26 5 2 40 40 H 1.08991 * 117.50358 * 145.02002 * 26 5 2 41 41 H 1.08999 * 117.50092 * 252.51221 * 27 26 5 42 42 H 1.09004 * 117.49961 * 107.48656 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2493 6 7 2.1371 0.1007 2.4580 7 6 3.0242 1.1139 2.5145 8 8 3.8129 1.2811 1.6074 9 6 3.0365 2.0307 3.6934 10 8 2.2480 1.8632 4.6008 11 7 3.9232 3.0441 3.7497 12 6 3.9834 3.8577 4.8843 13 6 5.2092 4.3603 5.3158 14 6 5.2801 5.1678 6.4385 15 6 4.1388 5.4828 7.1415 16 6 2.8934 4.9817 6.7183 17 6 1.7172 5.3005 7.4356 18 1 0.7724 5.3753 6.9177 19 6 1.7774 5.5192 8.8164 20 7 2.8747 5.2464 9.4747 21 14 0.2912 6.2006 9.7199 22 1 -0.4986 5.0795 10.2894 23 1 0.7449 7.0936 10.8162 24 1 -0.5541 6.9704 8.7721 25 6 2.8254 4.1677 5.5739 26 6 3.0896 -1.8170 1.0533 27 6 1.6530 -2.1912 1.4237 28 1 -0.3633 -1.0233 -0.0945 29 1 -0.3634 0.4299 0.9333 30 1 -0.3633 0.5934 -0.8391 31 1 1.7211 -1.5952 -1.2330 32 1 1.5630 -0.0842 3.2177 33 1 4.5198 3.2087 3.0027 34 1 6.1101 4.1185 4.7713 35 1 6.2352 5.5525 6.7643 36 1 4.1991 6.1126 8.0167 37 1 2.9166 5.3984 10.4318 38 1 1.8740 3.7821 5.2380 39 1 3.4165 -2.0243 0.0344 40 1 3.8528 -1.9265 1.8237 41 1 1.4711 -2.5468 2.4379 42 1 1.0351 -2.6444 0.6485 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595206221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:09 Heat of formation + Delta-G solvation = -67.444112 kcal Electronic energy + Delta-G solvation = -26028.643022 eV Core-core repulsion = 22167.539700 eV Total energy + Delta-G solvation = -3861.103322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.88054 -39.65028 -38.21855 -37.13439 -35.90074 -34.64633 -33.17350 -32.73598 -30.88831 -29.86669 -28.56461 -25.47334 -25.25023 -24.13128 -22.80176 -21.61906 -20.95165 -20.12714 -19.71367 -18.47888 -17.86128 -17.35505 -16.55877 -16.18736 -15.61506 -15.51340 -15.02656 -14.96583 -14.78803 -14.62673 -14.06124 -13.76271 -13.63599 -13.13169 -13.00635 -12.92985 -12.29847 -12.26628 -11.91126 -11.79999 -11.76677 -11.58509 -11.33784 -11.23064 -11.09447 -10.78730 -10.68724 -10.55026 -10.42122 -10.10180 -9.84798 -9.46819 -9.25791 -9.14815 -8.94469 -7.46055 -7.01513 -6.69339 -4.38595 1.48369 2.30992 2.74406 2.89564 3.09120 3.13803 3.17336 3.25297 3.50164 3.71496 3.96904 3.98452 4.23897 4.36404 4.52150 4.61625 4.68822 4.86816 4.94930 5.17578 5.19075 5.42368 5.60762 5.63880 5.69790 5.72999 5.80643 6.17348 6.18300 6.32737 6.56325 6.78701 6.96452 7.00167 7.05958 7.22525 7.25464 7.41190 7.63699 7.76239 7.87307 8.03812 8.05059 8.14425 8.43487 8.62923 8.90084 8.92720 10.25940 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.002849 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.729250 B = 9827.220367 C =10669.082272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 H 0.110 0.890 4 O -0.549 6.549 5 C 0.066 3.934 6 N -0.673 5.673 7 C 0.514 3.486 8 O -0.510 6.510 9 C 0.495 3.505 10 O -0.496 6.496 11 N -0.632 5.632 12 C 0.138 3.862 13 C -0.249 4.249 14 C -0.094 4.094 15 C -0.160 4.160 16 C 0.118 3.882 17 C -0.460 4.460 18 H 0.077 0.923 19 C 0.073 3.927 20 N -0.803 5.803 21 Si 0.912 3.088 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.202 4.202 26 C -0.162 4.162 27 C -0.172 4.172 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.370 0.630 32 H 0.417 0.583 33 H 0.411 0.589 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.279 0.721 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 -12.053 -13.974 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.075 3.925 3 H 0.127 0.873 4 O -0.353 6.353 5 C -0.022 4.022 6 N -0.328 5.328 7 C 0.295 3.705 8 O -0.384 6.384 9 C 0.275 3.725 10 O -0.370 6.370 11 N -0.277 5.277 12 C 0.046 3.954 13 C -0.270 4.270 14 C -0.113 4.113 15 C -0.180 4.180 16 C 0.115 3.885 17 C -0.490 4.490 18 H 0.095 0.905 19 C -0.143 4.143 20 N -0.430 5.430 21 Si 0.736 3.264 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.224 4.224 26 C -0.200 4.200 27 C -0.210 4.210 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.217 0.783 32 H 0.254 0.746 33 H 0.247 0.753 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.684 -11.472 -13.871 18.200 hybrid contribution -0.789 -0.379 0.829 1.205 sum -3.473 -11.851 -13.043 17.962 Atomic orbital electron populations 1.22484 0.95431 1.02685 1.03318 1.21488 0.92779 0.96738 0.81489 0.87269 1.86696 1.77123 1.28788 1.42677 1.21560 1.06156 0.86570 0.87918 1.45000 1.39577 1.31205 1.17029 1.20406 0.80970 0.81753 0.87374 1.90767 1.37514 1.71444 1.38699 1.19933 0.83152 0.82410 0.87005 1.90833 1.37342 1.71276 1.37537 1.43104 1.36689 1.28662 1.19250 1.17473 0.94901 0.94759 0.88221 1.20118 0.94007 1.10482 1.02376 1.20499 0.97419 0.98455 0.94974 1.21408 0.92104 1.03127 1.01326 1.17514 0.93441 0.87707 0.89797 1.19527 0.95118 1.42014 0.92345 0.90487 1.25869 0.97294 0.93033 0.98094 1.69792 1.27431 1.36155 1.09574 0.86246 0.81495 0.79445 0.79192 1.19626 1.20139 1.18530 1.21142 0.95780 1.04032 1.01401 1.23396 0.92327 1.00142 1.04113 1.23393 0.99117 0.94393 1.04064 0.92032 0.91117 0.91433 0.78286 0.74568 0.75332 0.88903 0.88727 0.86203 0.91004 0.87026 0.86981 0.88201 0.87678 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 9.31 37.16 0.35 -1.05 16 2 C 0.14 1.33 3.73 -26.73 -0.10 1.23 16 3 H 0.11 1.38 7.23 -51.93 -0.38 1.00 16 4 O -0.55 -5.11 12.06 -35.23 -0.43 -5.54 16 5 C 0.07 0.64 1.66 -131.82 -0.22 0.42 16 6 N -0.67 -7.99 5.44 -48.07 -0.26 -8.25 16 7 C 0.51 7.75 7.58 -11.63 -0.09 7.66 16 8 O -0.51 -8.39 15.76 5.49 0.09 -8.31 16 9 C 0.49 8.97 7.71 -11.63 -0.09 8.88 16 10 O -0.50 -10.36 13.97 5.48 0.08 -10.28 16 11 N -0.63 -11.80 5.32 -10.34 -0.06 -11.86 16 12 C 0.14 3.10 6.28 -83.82 -0.53 2.57 16 13 C -0.25 -5.44 9.97 -39.08 -0.39 -5.83 16 14 C -0.09 -2.17 10.01 -39.69 -0.40 -2.57 16 15 C -0.16 -4.13 8.64 -38.83 -0.34 -4.46 16 16 C 0.12 3.19 5.53 -106.85 -0.59 2.60 16 17 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 16 18 H 0.08 2.01 7.86 -52.49 -0.41 1.60 16 19 C 0.07 1.87 5.26 -17.34 -0.09 1.78 16 20 N -0.80 -21.00 10.93 55.55 0.61 -20.40 16 21 Si 0.91 18.96 29.57 -169.99 -5.03 13.94 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 25 C -0.20 -5.12 8.42 -38.67 -0.33 -5.45 16 26 C -0.16 -1.42 9.70 -26.73 -0.26 -1.68 16 27 C -0.17 -1.13 9.41 -26.73 -0.25 -1.38 16 28 H 0.06 0.35 7.54 -51.93 -0.39 -0.04 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.37 1.90 7.80 45.56 0.36 2.26 16 32 H 0.42 4.59 8.31 -40.82 -0.34 4.25 16 33 H 0.41 6.61 8.29 -40.82 -0.34 6.28 16 34 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 35 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.12 3.18 6.34 -52.49 -0.33 2.84 16 37 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 38 H 0.11 2.86 6.27 -52.48 -0.33 2.53 16 39 H 0.11 0.90 6.88 -51.93 -0.36 0.54 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.11 0.45 7.34 -51.93 -0.38 0.07 16 LS Contribution 357.51 15.07 5.39 5.39 Total: -1.00 -31.29 357.51 -7.84 -39.14 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -4.57 Total: 16.18 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -3.66 Total: -10.01 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.29 Total: -40.51 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.26 Total: -24.13 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.29 -7.84 -39.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595206221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.306 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds