Wall clock time and date at job start Tue Mar 31 2020 04:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47329 * 2 1 4 4 C 1.53001 * 109.47329 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47147 * 55.00645 * 4 3 2 6 6 C 1.50701 * 109.47403 * 174.99948 * 4 3 2 7 7 O 1.21295 * 119.99681 * 28.12086 * 6 4 3 8 8 N 1.34770 * 120.00279 * 208.11615 * 6 4 3 9 9 C 1.37100 * 119.99888 * 185.44926 * 8 6 4 10 10 H 1.08002 * 119.99981 * 220.91798 * 9 8 6 11 11 C 1.38950 * 120.00267 * 40.91986 * 9 8 6 12 12 N 1.31413 * 120.00034 * 18.09199 * 11 9 8 13 13 Si 1.86801 * 119.99989 * 198.08595 * 11 9 8 14 14 H 1.48493 * 109.47170 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46727 * 120.00214 * 13 11 9 16 16 H 1.48494 * 109.47139 * 240.00093 * 13 11 9 17 17 C 1.46503 * 120.00101 * 5.44518 * 8 6 4 18 18 C 1.55239 * 110.58073 * 228.05309 * 17 8 6 19 19 C 1.54888 * 102.58760 * 203.33608 * 18 17 8 20 20 C 1.54274 * 104.30995 * 37.93483 * 19 18 17 21 21 C 1.53869 * 106.59955 * 336.32226 * 20 19 18 22 22 S 1.81399 * 109.47173 * 295.00281 * 4 3 2 23 23 N 1.65592 * 104.45077 * 299.99743 * 22 4 3 24 24 O 1.42098 * 110.54251 * 51.62364 * 22 4 3 25 25 O 1.42103 * 110.54073 * 188.37327 * 22 4 3 26 26 H 1.08995 * 109.47133 * 59.99340 * 1 2 3 27 27 H 1.08995 * 109.46984 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46834 * 299.99442 * 1 2 3 29 29 H 1.09008 * 109.46951 * 240.00064 * 2 1 3 30 30 H 1.08997 * 109.47620 * 120.00476 * 2 1 3 31 31 H 1.09008 * 109.47052 * 60.00126 * 3 2 1 32 32 H 1.08995 * 109.47552 * 300.00403 * 3 2 1 33 33 H 0.96997 * 120.00170 * 179.97438 * 12 11 9 34 34 H 1.08998 * 110.43235 * 350.63638 * 17 8 6 35 35 H 1.09007 * 110.89343 * 85.04741 * 18 17 8 36 36 H 1.08998 * 110.76979 * 321.57244 * 18 17 8 37 37 H 1.09002 * 110.48758 * 279.19215 * 19 18 17 38 38 H 1.09003 * 110.48510 * 156.67550 * 19 18 17 39 39 H 1.08999 * 110.02890 * 95.60997 * 20 19 18 40 40 H 1.08993 * 110.02758 * 216.98605 * 20 19 18 41 41 H 1.09002 * 110.03483 * 119.28292 * 21 20 19 42 42 H 1.08996 * 110.03220 * 240.66484 * 21 20 19 43 43 H 0.97001 * 120.00187 * 0.02562 * 23 22 4 44 44 H 0.96998 * 120.00282 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8532 -0.8428 6 6 4.0724 2.8578 -0.1245 7 8 3.4013 3.7782 0.2924 8 7 5.2673 3.1010 -0.6983 9 6 5.7751 4.3745 -0.7112 10 1 6.2690 4.7500 -1.5952 11 6 5.6543 5.1820 0.4131 12 7 5.3893 4.6446 1.5827 13 14 5.8690 7.0315 0.2621 14 1 6.1586 7.3824 -1.1514 15 1 4.6218 7.7114 0.6949 16 1 6.9966 7.4708 1.1227 17 6 6.0237 2.0047 -1.3083 18 6 7.5020 2.0321 -0.8352 19 6 8.2338 1.2735 -1.9701 20 6 7.5164 1.7292 -3.2576 21 6 6.1112 2.1940 -2.8369 22 16 4.1754 0.7193 1.5490 23 7 3.5578 1.7001 2.7316 24 8 3.5629 -0.5412 1.7837 25 8 5.5828 0.8817 1.6586 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 5.3053 5.2083 2.3676 34 1 5.5644 1.0458 -1.0683 35 1 7.6159 1.5095 0.1147 36 1 7.8646 3.0572 -0.7592 37 1 8.1313 0.1965 -1.8371 38 1 9.2865 1.5549 -2.0000 39 1 8.0609 2.5545 -3.7164 40 1 7.4412 0.8970 -3.9575 41 1 5.9738 3.2450 -3.0913 42 1 5.3533 1.5878 -3.3329 43 1 3.0063 2.4612 2.4916 44 1 3.7474 1.5136 3.6644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597276084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:24 Heat of formation + Delta-G solvation = -109.554744 kcal Electronic energy + Delta-G solvation = -27692.819021 eV Core-core repulsion = 23965.333596 eV Total energy + Delta-G solvation = -3727.485424 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.14066 -37.09428 -36.63540 -35.34448 -34.99797 -33.46990 -32.37997 -31.79720 -30.14997 -28.06374 -26.89119 -25.65321 -23.68135 -21.13764 -20.24641 -19.93906 -19.55259 -18.70870 -17.41842 -17.22017 -16.23022 -16.01655 -15.37686 -15.15712 -14.95154 -14.70371 -14.23809 -14.01254 -13.66412 -13.37221 -13.06455 -12.84795 -12.73585 -12.28745 -11.98953 -11.69814 -11.61914 -11.53330 -11.39343 -11.30123 -11.16563 -10.95524 -10.88553 -10.73375 -10.71181 -10.52427 -10.43404 -10.38174 -10.22303 -9.97787 -9.84473 -9.66645 -9.64142 -8.85567 -8.29864 -7.21488 -6.20039 -3.90306 0.77459 3.25905 3.35467 3.36987 3.39871 4.05636 4.08556 4.20826 4.55257 4.68336 5.02683 5.13692 5.17112 5.24671 5.30122 5.33272 5.37348 5.51909 5.65776 5.76452 5.79546 5.96202 6.00986 6.06592 6.12019 6.13085 6.17336 6.24608 6.27830 6.39450 6.40654 6.43343 6.60453 6.63462 6.72716 6.80214 7.05421 7.20244 7.54653 7.76226 8.12900 8.91570 8.99569 9.51485 10.08065 10.87658 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011611 B = 0.007020 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.995723 B = 3987.594222 C = 4930.624110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.170 4.170 3 C -0.080 4.080 4 C -0.601 4.601 5 H 0.141 0.859 6 C 0.486 3.514 7 O -0.526 6.526 8 N -0.422 5.422 9 C -0.332 4.332 10 H 0.084 0.916 11 C 0.068 3.932 12 N -0.813 5.813 13 Si 0.912 3.088 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.286 1.286 17 C 0.125 3.875 18 C -0.120 4.120 19 C -0.128 4.128 20 C -0.118 4.118 21 C -0.136 4.136 22 S 2.612 3.388 23 N -1.234 6.234 24 O -0.983 6.983 25 O -0.945 6.945 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.265 0.735 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.421 0.579 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 -7.497 -3.526 8.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.208 4.208 3 C -0.118 4.118 4 C -0.714 4.714 5 H 0.159 0.841 6 C 0.270 3.730 7 O -0.404 6.404 8 N -0.141 5.141 9 C -0.460 4.460 10 H 0.102 0.898 11 C -0.143 4.143 12 N -0.446 5.446 13 Si 0.739 3.261 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.212 1.212 17 C 0.019 3.981 18 C -0.158 4.158 19 C -0.166 4.166 20 C -0.156 4.156 21 C -0.175 4.175 22 S 2.703 3.297 23 N -0.909 5.909 24 O -0.971 6.971 25 O -0.934 6.934 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.249 0.751 44 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.311 -7.913 -3.137 8.820 hybrid contribution -0.304 1.458 -0.187 1.501 sum -2.615 -6.455 -3.324 7.717 Atomic orbital electron populations 1.21683 0.95510 1.01376 1.01716 1.22282 0.96846 0.96561 1.05089 1.21143 0.88297 0.97402 1.04997 1.30521 1.07945 1.10607 1.22299 0.84139 1.18317 0.82560 0.85832 0.86285 1.90528 1.55835 1.43687 1.50352 1.43217 1.13618 1.06802 1.50492 1.18953 1.40050 0.87978 0.99013 0.89793 1.25190 0.95353 0.99525 0.94283 1.69875 1.40636 1.35761 0.98352 0.86150 0.77490 0.84232 0.78188 1.19675 1.20745 1.21217 1.22035 0.93659 0.90234 0.92124 1.22768 0.93529 1.02052 0.97453 1.22368 0.99077 0.99587 0.95553 1.22054 0.96189 0.99985 0.97418 1.22516 0.96112 1.02404 0.96444 1.05043 0.74678 0.73666 0.76285 1.52729 1.71070 1.46422 1.20668 1.93464 1.77766 1.41812 1.84090 1.93612 1.29924 1.85525 1.84352 0.93003 0.92768 0.92631 0.91870 0.87669 0.90327 0.89985 0.92441 0.92390 0.90613 0.89384 0.92391 0.92149 0.92152 0.92739 0.90404 0.92847 0.75058 0.76116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.17 -2.41 5.65 -26.73 -0.15 -2.57 16 3 C -0.08 -1.29 4.12 -26.73 -0.11 -1.40 16 4 C -0.60 -11.13 1.95 -27.88 -0.05 -11.19 16 5 H 0.14 2.28 6.07 -51.92 -0.32 1.97 16 6 C 0.49 11.18 5.60 -10.99 -0.06 11.12 16 7 O -0.53 -13.55 13.49 5.54 0.07 -13.48 16 8 N -0.42 -9.84 2.56 -105.77 -0.27 -10.11 16 9 C -0.33 -8.44 7.30 -14.93 -0.11 -8.55 16 10 H 0.08 2.07 7.21 -52.49 -0.38 1.70 16 11 C 0.07 1.79 4.40 -17.47 -0.08 1.71 16 12 N -0.81 -21.92 11.59 55.50 0.64 -21.28 16 13 Si 0.91 20.79 29.59 -169.99 -5.03 15.76 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 17 C 0.12 2.46 2.96 -66.08 -0.20 2.26 16 18 C -0.12 -2.33 6.38 -24.55 -0.16 -2.49 16 19 C -0.13 -1.94 6.82 -25.07 -0.17 -2.11 16 20 C -0.12 -1.70 6.80 -25.61 -0.17 -1.88 16 21 C -0.14 -2.30 6.44 -25.61 -0.16 -2.46 16 22 S 2.61 49.66 5.46 -107.50 -0.59 49.08 16 23 N -1.23 -21.71 9.13 60.35 0.55 -21.16 16 24 O -0.98 -18.71 14.89 -57.54 -0.86 -19.56 16 25 O -0.95 -21.16 17.54 -57.54 -1.01 -22.17 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 30 H 0.11 1.64 4.90 -51.93 -0.25 1.39 16 31 H 0.08 1.27 6.97 -51.92 -0.36 0.91 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.06 1.06 5.46 -51.93 -0.28 0.78 16 35 H 0.08 1.59 7.76 -51.92 -0.40 1.19 16 36 H 0.09 1.87 6.96 -51.93 -0.36 1.51 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.43 6.96 -51.93 -0.36 1.07 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.42 7.56 7.27 -34.47 -0.25 7.31 16 44 H 0.41 6.23 8.96 -34.47 -0.31 5.92 16 LS Contribution 352.15 15.07 5.31 5.31 Total: -1.00 -31.58 352.15 -8.88 -40.46 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -6.64 Total: 16.07 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -1.06 Total: -18.92 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.92 Total: -52.54 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -1.79 Total: -55.21 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Atomic # 16 Polarization: 49.66 SS G_CDS: -0.59 Total: 49.08 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.58 -8.88 -40.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597276084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.096 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds