Wall clock time and date at job start Tue Mar 31 2020 05:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.35854 * 2 1 4 4 C 1.54166 * 110.31503 * 237.83319 * 2 1 3 5 5 H 1.08998 * 109.64266 * 149.28236 * 4 2 1 6 6 N 1.46500 * 109.64913 * 28.85790 * 4 2 1 7 7 C 1.34778 * 120.00027 * 87.60282 * 6 4 2 8 8 O 1.21585 * 120.00012 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99967 * 179.72696 * 7 6 4 10 10 C 1.46496 * 120.00134 * 180.27626 * 9 7 6 11 11 C 1.52999 * 109.47193 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47013 * 300.00053 * 11 10 9 13 13 C 1.52999 * 109.46982 * 60.00215 * 11 10 9 14 14 C 1.50700 * 109.47147 * 180.02562 * 11 10 9 15 15 H 1.07997 * 120.00159 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99990 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00144 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00206 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47070 * 59.99701 * 18 16 14 20 20 H 1.48494 * 109.47398 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47079 * 300.00025 * 18 16 14 22 22 C 1.53876 * 108.59537 * 269.06982 * 4 2 1 23 23 C 1.55051 * 106.62279 * 312.75509 * 22 4 2 24 24 S 1.82745 * 110.34737 * 122.05580 * 2 1 3 25 25 O 1.42101 * 109.27772 * 3.32605 * 24 2 1 26 26 O 1.42094 * 109.56338 * 230.14469 * 24 2 1 27 27 H 1.08997 * 109.46873 * 187.92231 * 1 2 3 28 28 H 1.09004 * 109.46677 * 307.91610 * 1 2 3 29 29 H 1.08996 * 109.47514 * 67.91541 * 1 2 3 30 30 H 0.96994 * 119.99963 * 267.61036 * 6 4 2 31 31 H 0.97002 * 119.99700 * 0.27738 * 9 7 6 32 32 H 1.08999 * 109.47128 * 299.99714 * 10 9 7 33 33 H 1.08996 * 109.47005 * 59.99583 * 10 9 7 34 34 H 1.09002 * 109.47267 * 60.00081 * 12 11 10 35 35 H 1.09005 * 109.46874 * 180.02562 * 12 11 10 36 36 H 1.08999 * 109.47169 * 299.99651 * 12 11 10 37 37 H 1.08999 * 109.47482 * 60.00056 * 13 11 10 38 38 H 1.09005 * 109.47047 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47053 * 299.99769 * 13 11 10 40 40 H 0.97005 * 119.99942 * 180.02562 * 17 16 14 41 41 H 1.08998 * 110.02787 * 72.04697 * 22 4 2 42 42 H 1.09001 * 110.02608 * 193.46415 * 22 4 2 43 43 H 1.08996 * 110.78639 * 160.70647 * 23 22 4 44 44 H 1.09004 * 110.78681 * 284.16453 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0653 -0.7697 -1.2238 5 1 3.0201 -0.3456 -1.5345 6 7 1.1031 -0.6753 -2.3245 7 6 1.1589 0.3637 -3.1812 8 8 2.0075 1.2230 -3.0401 9 7 0.2772 0.4477 -4.1971 10 6 0.3416 1.5739 -5.1317 11 6 -0.7619 1.4291 -6.1816 12 6 -0.5683 0.1189 -6.9476 13 6 -2.1262 1.4184 -5.4893 14 6 -0.6952 2.5873 -7.1435 15 1 0.0585 3.3505 -7.0183 16 6 -1.5971 2.6731 -8.1828 17 7 -2.5153 1.7439 -8.3350 18 14 -1.5149 4.1091 -9.3747 19 1 -0.1909 4.1192 -10.0470 20 1 -2.5858 3.9685 -10.3937 21 1 -1.7023 5.3808 -8.6312 22 6 2.2578 -2.2447 -0.8301 23 6 3.0093 -2.2473 0.5262 24 16 2.1655 -0.9094 1.4522 25 8 1.0731 -1.4559 2.1783 26 8 3.1354 -0.1167 2.1229 27 1 -0.3633 -1.0178 0.1416 28 1 -0.3633 0.6315 0.8108 29 1 -0.3634 0.3864 -0.9522 30 1 0.4259 -1.3605 -2.4368 31 1 -0.4001 -0.2377 -4.3093 32 1 0.2041 2.5073 -4.5860 33 1 1.3134 1.5813 -5.6252 34 1 -0.6162 -0.7191 -6.2521 35 1 -1.3542 0.0160 -7.6959 36 1 0.4037 0.1266 -7.4408 37 1 -2.2642 2.3518 -4.9436 38 1 -2.9124 1.3157 -6.2373 39 1 -2.1742 0.5804 -4.7939 40 1 -3.1496 1.8041 -9.0665 41 1 1.2887 -2.7315 -0.7208 42 1 2.8510 -2.7586 -1.5865 43 1 2.8887 -3.2045 1.0334 44 1 4.0645 -2.0136 0.3843 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599074711.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:57 Heat of formation + Delta-G solvation = -102.641076 kcal Electronic energy + Delta-G solvation = -25618.384049 eV Core-core repulsion = 21891.198424 eV Total energy + Delta-G solvation = -3727.185625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11753 -37.78221 -37.28053 -36.32138 -36.20633 -33.48126 -32.85151 -32.05156 -30.70740 -26.88054 -25.77348 -25.54520 -24.75214 -24.26599 -21.47011 -20.59788 -19.04218 -18.81607 -18.38636 -17.17538 -16.94187 -16.34981 -15.88925 -15.67542 -15.35937 -14.81439 -14.58329 -14.39920 -14.12486 -13.74553 -13.43020 -13.36861 -12.91655 -12.79361 -12.62453 -12.49956 -12.32782 -12.24345 -12.19888 -11.70845 -11.47629 -11.42513 -11.23386 -10.97089 -10.88536 -10.75879 -10.49516 -10.42340 -10.25311 -9.92301 -9.68064 -9.36710 -9.24942 -8.84425 -8.46692 -8.31089 -6.05756 -4.15943 -0.30117 2.17393 2.82077 3.21898 3.27887 3.32323 3.36177 3.47187 3.69936 3.95526 4.11718 4.20862 4.35552 4.40029 4.51964 4.61454 4.91223 5.10787 5.14617 5.21214 5.28397 5.45208 5.48259 5.65572 5.93356 6.13217 6.30119 6.35956 6.45284 6.72750 6.77094 6.82668 6.97801 6.99754 7.16579 7.33355 7.51206 7.66040 7.96862 8.07729 8.30774 8.36880 8.82826 8.89810 9.50146 10.95621 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.034879 B = 0.002597 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.584258 B =10779.582143 C =10826.248902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.570 4.570 3 H 0.149 0.851 4 C 0.178 3.822 5 H 0.112 0.888 6 N -0.740 5.740 7 C 0.698 3.302 8 O -0.594 6.594 9 N -0.730 5.730 10 C 0.150 3.850 11 C 0.057 3.943 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.508 4.508 15 H 0.057 0.943 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.128 4.128 23 C -0.587 4.587 24 S 2.388 3.612 25 O -0.932 6.932 26 O -0.938 6.938 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.398 0.602 31 H 0.394 0.606 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.005 0.995 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.085 0.915 39 H 0.005 0.995 40 H 0.261 0.739 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.141 0.859 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.354 -11.478 15.077 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.682 4.682 3 H 0.167 0.833 4 C 0.069 3.931 5 H 0.129 0.871 6 N -0.396 5.396 7 C 0.398 3.602 8 O -0.473 6.473 9 N -0.385 5.385 10 C 0.027 3.973 11 C 0.056 3.944 12 C -0.187 4.187 13 C -0.188 4.188 14 C -0.546 4.546 15 H 0.075 0.925 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.167 4.167 23 C -0.717 4.717 24 S 2.570 3.430 25 O -0.929 6.929 26 O -0.935 6.935 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.232 0.768 31 H 0.229 0.771 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.104 0.896 39 H 0.024 0.976 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.124 0.876 43 H 0.159 0.841 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.890 -10.510 16.002 20.346 hybrid contribution -0.471 0.033 -1.612 1.679 sum 6.419 -10.477 14.390 18.922 Atomic orbital electron populations 1.21415 0.89073 1.03396 1.04342 1.30787 1.07773 1.13588 1.16039 0.83298 1.21069 0.94240 0.93003 0.84798 0.87050 1.45004 1.36656 1.27484 1.30454 1.16053 0.82501 0.81890 0.79725 1.90897 1.39176 1.41201 1.76008 1.45528 1.34219 1.29389 1.29316 1.21616 1.00450 0.85954 0.89283 1.18352 0.89980 0.95064 0.90990 1.21823 1.01450 0.95228 1.00249 1.21822 1.01562 0.96581 0.98788 1.20946 1.15421 1.07461 1.10786 0.92455 1.24872 0.95093 0.96093 0.97395 1.69790 1.17919 1.33388 1.31390 0.86626 0.77661 0.82857 0.80673 1.20269 1.21330 1.20251 1.22452 1.02053 0.96308 0.95889 1.30579 1.12481 1.19023 1.09601 1.09252 0.76688 0.78645 0.78384 1.93608 1.52623 1.78063 1.68563 1.93617 1.60665 1.67825 1.71387 0.91045 0.91485 0.89933 0.76795 0.77073 0.92873 0.92878 0.97588 0.89632 0.95460 0.95458 0.89632 0.97575 0.92930 0.88862 0.87613 0.84110 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 8.34 37.16 0.31 -0.82 16 2 C -0.57 -5.05 3.74 -26.12 -0.10 -5.14 16 3 H 0.15 1.45 8.14 -51.93 -0.42 1.02 16 4 C 0.18 1.51 2.73 -66.86 -0.18 1.33 16 5 H 0.11 1.07 7.52 -51.93 -0.39 0.68 16 6 N -0.74 -7.56 3.39 -57.63 -0.20 -7.76 16 7 C 0.70 10.85 8.19 -86.91 -0.71 10.14 16 8 O -0.59 -11.64 15.97 5.29 0.08 -11.55 16 9 N -0.73 -11.87 4.96 -65.23 -0.32 -12.19 16 10 C 0.15 3.04 4.50 -4.04 -0.02 3.03 16 11 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 12 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 13 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 14 C -0.51 -12.99 8.01 -34.44 -0.28 -13.27 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 17 N -0.89 -23.13 9.35 55.43 0.52 -22.61 16 18 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.13 -0.65 5.98 -25.19 -0.15 -0.80 16 23 C -0.59 -2.77 7.31 38.24 0.28 -2.49 16 24 S 2.39 19.89 5.96 -107.50 -0.64 19.25 16 25 O -0.93 -10.30 17.02 -57.73 -0.98 -11.29 16 26 O -0.94 -11.41 18.15 -57.73 -1.05 -12.46 16 27 H 0.07 0.53 7.77 -51.93 -0.40 0.13 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.86 6.74 -51.93 -0.35 0.51 16 30 H 0.40 2.94 8.63 -40.82 -0.35 2.59 16 31 H 0.39 5.64 6.18 -40.82 -0.25 5.39 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 35 H 0.09 2.06 6.07 -51.93 -0.32 1.75 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 2.07 6.07 -51.93 -0.32 1.75 16 39 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 40 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 41 H 0.09 0.33 8.12 -51.93 -0.42 -0.09 16 42 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.14 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -33.94 356.42 -9.51 -43.45 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.86 Total: 4.61 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.42 Total: -10.21 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.00 Total: -42.55 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -1.95 Total: -35.29 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 19.89 SS G_CDS: -0.64 Total: 19.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.94 -9.51 -43.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599074711.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.189 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds