Wall clock time and date at job start Tue Mar 31 2020 05:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46896 * 2 1 4 4 S 1.81393 * 109.47399 * 120.00236 * 2 1 3 5 5 O 1.42099 * 108.57770 * 305.51509 * 4 2 1 6 6 O 1.42093 * 108.58136 * 174.48636 * 4 2 1 7 7 C 1.81404 * 101.92151 * 59.99813 * 4 2 1 8 8 C 1.50701 * 109.47098 * 179.97438 * 7 4 2 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 4 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 4 11 11 C 1.47074 * 120.88261 * 359.72571 * 10 8 7 12 12 C 1.53695 * 108.27576 * 128.74910 * 11 10 8 13 13 N 1.46904 * 109.25420 * 54.08473 * 12 11 10 14 14 C 1.46897 * 110.99901 * 172.60509 * 13 12 11 15 15 C 1.50703 * 109.47428 * 294.29982 * 14 13 12 16 16 H 1.08006 * 119.99872 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00179 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00343 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00028 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46883 * 60.00256 * 19 17 15 21 21 H 1.48500 * 109.47172 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47020 * 300.00160 * 19 17 15 23 23 C 1.46897 * 111.26792 * 296.75440 * 13 12 11 24 24 C 1.47075 * 120.87669 * 180.02562 * 10 8 7 25 25 H 1.08997 * 109.47169 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46938 * 299.99676 * 1 2 3 27 27 H 1.08996 * 109.47443 * 59.99930 * 1 2 3 28 28 H 1.09005 * 109.46938 * 240.00324 * 2 1 3 29 29 H 1.08998 * 109.46692 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47132 * 300.00260 * 3 2 1 31 31 H 1.08995 * 109.47104 * 60.00387 * 3 2 1 32 32 H 1.09002 * 109.47124 * 60.00027 * 7 4 2 33 33 H 1.09001 * 109.46975 * 300.00148 * 7 4 2 34 34 H 1.08994 * 109.63016 * 248.52290 * 11 10 8 35 35 H 1.09001 * 109.62513 * 9.10199 * 11 10 8 36 36 H 1.08997 * 109.65385 * 294.08176 * 12 11 10 37 37 H 1.08999 * 109.42153 * 173.94686 * 12 11 10 38 38 H 1.08994 * 109.47420 * 54.30050 * 14 13 12 39 39 H 1.08997 * 109.47407 * 174.29955 * 14 13 12 40 40 H 0.96998 * 120.00461 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.49120 * 303.14081 * 23 13 12 42 42 H 1.09003 * 109.48945 * 183.06528 * 23 13 12 43 43 H 1.09003 * 109.63301 * 350.89825 * 24 10 8 44 44 H 1.09003 * 109.62726 * 111.48107 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4810 5 8 1.5480 -0.2495 2.6248 6 8 3.5496 -0.9572 1.3989 7 6 1.4229 -2.5109 1.2746 8 6 1.8282 -3.3804 2.4369 9 8 2.5278 -2.9275 3.3179 10 7 1.4122 -4.6609 2.4977 11 6 0.5574 -5.2278 1.4436 12 6 1.1925 -6.5425 0.9633 13 7 1.4189 -7.4215 2.1183 14 6 1.8613 -8.7542 1.6869 15 6 0.7506 -9.4301 0.9250 16 1 -0.1899 -8.9204 0.7758 17 6 0.9352 -10.6986 0.4175 18 7 2.0805 -11.3191 0.5987 19 14 -0.4414 -11.5361 -0.5275 20 1 -0.7916 -10.7209 -1.7183 21 1 0.0063 -12.8829 -0.9646 22 1 -1.6329 -11.6701 0.3486 23 6 2.3774 -6.8278 3.0599 24 6 1.7956 -5.5264 3.6233 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.7894 -2.9509 0.3471 33 1 0.3361 -2.4370 1.2371 34 1 -0.4372 -5.4230 1.8442 35 1 0.4891 -4.5272 0.6114 36 1 2.1435 -6.3328 0.4738 37 1 0.5209 -7.0332 0.2589 38 1 2.7358 -8.6562 1.0436 39 1 2.1186 -9.3523 2.5610 40 1 2.2104 -12.2117 0.2420 41 1 3.3120 -6.6142 2.5412 42 1 2.5652 -7.5255 3.8760 43 1 2.5462 -5.0234 4.2329 44 1 0.9174 -5.7498 4.2291 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602211205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:02 Heat of formation + Delta-G solvation = -95.354127 kcal Electronic energy + Delta-G solvation = -25485.512882 eV Core-core repulsion = 21758.643243 eV Total energy + Delta-G solvation = -3726.869640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.20348 -37.73262 -37.18976 -36.17987 -35.51319 -34.59231 -32.60283 -31.60609 -30.19385 -28.27255 -27.68092 -25.51990 -23.46215 -23.08910 -22.19604 -20.88263 -19.09697 -18.79731 -17.86705 -16.82822 -16.72566 -16.43203 -16.32940 -15.56372 -15.34589 -14.90956 -14.79309 -14.53106 -14.06387 -13.82100 -13.75776 -13.70090 -13.48891 -13.39718 -12.84097 -12.64005 -12.41821 -12.21235 -12.13639 -12.01176 -11.94146 -11.89877 -11.39374 -11.32315 -11.13544 -11.04880 -10.86221 -10.71370 -10.63908 -10.54853 -10.16194 -9.94395 -9.37607 -8.68664 -8.52814 -7.43467 -6.12444 -4.15299 -0.39313 2.33381 2.45326 2.76552 3.25400 3.30981 3.32501 3.47054 3.66442 4.04326 4.09582 4.14282 4.32245 4.55856 4.61318 4.66227 4.77334 4.97350 5.05136 5.11860 5.12405 5.22155 5.26215 5.26716 5.37524 5.52148 5.53142 5.53835 5.63751 5.73195 5.90965 6.19209 6.32008 6.33453 6.47548 7.12742 7.18820 7.26171 7.65685 7.86785 7.92694 8.03436 8.38673 8.91314 9.49497 10.98273 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023538 B = 0.002860 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.255705 B = 9788.020572 C =10459.246586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.583 4.583 3 C -0.142 4.142 4 S 2.451 3.549 5 O -0.918 6.918 6 O -0.920 6.920 7 C -0.660 4.660 8 C 0.541 3.459 9 O -0.540 6.540 10 N -0.595 5.595 11 C 0.104 3.896 12 C 0.048 3.952 13 N -0.536 5.536 14 C 0.194 3.806 15 C -0.513 4.513 16 H 0.063 0.937 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.039 3.961 24 C 0.115 3.885 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.027 0.973 37 H 0.100 0.900 38 H -0.008 1.008 39 H 0.033 0.967 40 H 0.263 0.737 41 H 0.029 0.971 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 21.859 -3.372 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.692 4.692 3 C -0.201 4.201 4 S 2.628 3.372 5 O -0.915 6.915 6 O -0.917 6.917 7 C -0.788 4.788 8 C 0.327 3.673 9 O -0.419 6.419 10 N -0.327 5.327 11 C -0.019 4.019 12 C -0.081 4.081 13 N -0.261 5.261 14 C 0.069 3.931 15 C -0.551 4.551 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.090 4.090 24 C -0.007 4.007 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.156 0.844 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.118 0.882 38 H 0.010 0.990 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.627 22.127 -2.026 22.514 hybrid contribution -0.492 -1.076 -1.921 2.256 sum -4.119 21.052 -3.947 21.811 Atomic orbital electron populations 1.21760 0.89901 1.03726 1.05182 1.30191 1.07117 1.10251 1.21677 1.21629 1.02225 0.91490 1.04716 1.07647 0.76029 0.76526 0.77039 1.93561 1.79256 1.73695 1.44999 1.93579 1.26499 1.85220 1.86452 1.30899 1.15888 1.23944 1.08024 1.19047 0.80287 0.82557 0.85411 1.90831 1.38428 1.72775 1.39834 1.48094 1.49828 1.09995 1.24764 1.22243 0.94541 0.95553 0.89580 1.22435 0.99834 0.91699 0.94136 1.62092 1.45212 1.04363 1.14451 1.19730 0.95095 0.82737 0.95529 1.21080 0.99818 1.00282 1.33943 0.91860 1.24997 0.95809 0.97273 0.96446 1.69940 1.23760 1.13962 1.45907 0.86545 0.82117 0.78541 0.80093 1.20281 1.21326 1.20111 1.22439 0.93912 0.94924 0.97717 1.21912 1.01099 0.89816 0.87844 0.91128 0.90183 0.90059 0.84396 0.90704 0.89910 0.90672 0.82217 0.82193 0.89963 0.90054 0.95485 0.88204 0.99029 0.94915 0.92722 0.95277 0.89686 0.88912 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 8.94 37.16 0.33 -0.34 16 2 C -0.58 -3.51 3.31 -26.73 -0.09 -3.60 16 3 C -0.14 -0.86 9.20 37.16 0.34 -0.52 16 4 S 2.45 26.80 3.48 -107.50 -0.37 26.43 16 5 O -0.92 -13.04 17.76 -59.52 -1.06 -14.10 16 6 O -0.92 -13.76 17.94 -59.54 -1.07 -14.83 16 7 C -0.66 -6.13 4.20 36.01 0.15 -5.97 16 8 C 0.54 7.98 7.73 -10.98 -0.08 7.89 16 9 O -0.54 -9.98 15.08 2.54 0.04 -9.94 16 10 N -0.59 -8.64 3.00 -172.16 -0.52 -9.16 16 11 C 0.10 1.32 6.53 -3.37 -0.02 1.30 16 12 C 0.05 0.82 5.47 -3.46 -0.02 0.80 16 13 N -0.54 -10.68 4.62 -235.44 -1.09 -11.77 16 14 C 0.19 4.79 4.72 -4.98 -0.02 4.76 16 15 C -0.51 -13.55 8.41 -34.44 -0.29 -13.84 16 16 H 0.06 1.62 7.13 -52.48 -0.37 1.25 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -25.81 13.29 55.43 0.74 -25.08 16 19 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.04 0.69 5.62 -3.68 -0.02 0.66 16 24 C 0.12 1.76 6.60 -3.58 -0.02 1.74 16 25 H 0.07 0.19 6.56 -51.93 -0.34 -0.15 16 26 H 0.08 0.40 8.06 -51.93 -0.42 -0.02 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.14 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.16 0.97 7.67 -51.92 -0.40 0.57 16 33 H 0.16 0.87 6.72 -51.92 -0.35 0.52 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.72 6.02 -51.93 -0.31 0.41 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 1.78 6.67 -51.93 -0.35 1.43 16 38 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 39 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.43 7.99 -51.93 -0.41 1.02 16 43 H 0.09 1.42 7.06 -51.93 -0.37 1.05 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -36.94 363.77 -9.81 -46.75 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -7.10 Total: -3.73 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 0.16 Total: -5.67 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.87 Total: -46.00 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -2.09 Total: -38.87 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 26.80 SS G_CDS: -0.37 Total: 26.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.94 -9.81 -46.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602211205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.609 kcal (2) G-P(sol) polarization free energy of solvation -36.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds