Wall clock time and date at job start Tue Mar 31 2020 05:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.70967 * 2 1 4 4 C 1.52991 * 109.71877 * 239.39048 * 2 1 3 5 5 H 1.08996 * 109.21133 * 166.71537 * 4 2 1 6 6 C 1.52999 * 109.21855 * 47.34111 * 4 2 1 7 7 N 1.45646 * 110.77406 * 287.00616 * 4 2 1 8 8 C 1.33376 * 124.58805 * 338.10362 * 7 4 2 9 9 O 1.21287 * 118.49019 * 184.29533 * 8 7 4 10 10 C 1.50438 * 123.02454 * 4.31906 * 8 7 4 11 11 H 1.09010 * 109.56474 * 227.47100 * 10 8 7 12 12 C 1.52992 * 109.57122 * 107.11544 * 10 8 7 13 13 N 1.47047 * 108.89146 * 347.28723 * 10 8 7 14 14 S 1.65597 * 121.35991 * 222.75909 * 13 10 8 15 15 O 1.42105 * 104.27177 * 26.05619 * 14 13 10 16 16 O 1.42106 * 104.27781 * 153.90557 * 14 13 10 17 17 C 1.81396 * 104.45239 * 269.98073 * 14 13 10 18 18 C 1.53001 * 109.46974 * 179.97438 * 17 14 13 19 19 C 1.53007 * 109.46841 * 180.02562 * 18 17 14 20 20 C 1.50701 * 109.46969 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99866 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99702 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00311 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99438 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47503 * 59.99995 * 24 22 20 26 26 H 1.48506 * 109.46899 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47202 * 299.99173 * 24 22 20 28 28 H 1.08998 * 109.47062 * 165.31219 * 1 2 3 29 29 H 1.08992 * 109.47383 * 285.31168 * 1 2 3 30 30 H 1.09005 * 109.47288 * 45.31378 * 1 2 3 31 31 H 1.09005 * 109.47161 * 59.99876 * 6 4 2 32 32 H 1.09002 * 109.46931 * 300.00411 * 6 4 2 33 33 H 1.08997 * 109.47211 * 179.97438 * 6 4 2 34 34 H 0.96996 * 117.70581 * 158.09998 * 7 4 2 35 35 H 1.08995 * 109.47086 * 309.28707 * 12 10 8 36 36 H 1.09008 * 109.47078 * 69.28630 * 12 10 8 37 37 H 1.09001 * 109.47473 * 189.28242 * 12 10 8 38 38 H 1.08995 * 109.47142 * 299.99705 * 17 14 13 39 39 H 1.09001 * 109.46924 * 60.00003 * 17 14 13 40 40 H 1.08995 * 109.47223 * 299.99995 * 18 17 14 41 41 H 1.09001 * 109.47015 * 60.00399 * 18 17 14 42 42 H 1.08995 * 109.47084 * 299.99928 * 19 18 17 43 43 H 1.09001 * 109.47115 * 60.00308 * 19 18 17 44 44 H 0.96996 * 119.99914 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0462 -0.7333 -1.2395 5 1 3.1102 -0.5296 -1.3596 6 6 1.2946 -0.2285 -2.4728 7 7 1.8456 -2.1701 -1.1106 8 6 1.6890 -2.8118 0.0481 9 8 1.6083 -4.0219 0.0330 10 6 1.6074 -2.1038 1.3729 11 1 2.2666 -2.5936 2.0898 12 6 0.1671 -2.1433 1.8873 13 7 2.0278 -0.7063 1.1925 14 16 3.0209 0.0429 2.2856 15 8 3.7527 -1.0204 2.8801 16 8 3.6775 1.0509 1.5292 17 6 1.8878 0.7877 3.4905 18 6 2.6949 1.5177 4.5659 19 6 1.7391 2.1454 5.5826 20 6 2.5340 2.8651 6.6415 21 1 3.6130 2.8735 6.5943 22 6 1.8838 3.5118 7.6711 23 7 0.5701 3.5011 7.7288 24 14 2.8692 4.4044 8.9833 25 1 3.6863 5.4701 8.3495 26 1 1.9416 5.0135 9.9701 27 1 3.7628 3.4396 9.6732 28 1 -0.3633 -0.9941 -0.2606 29 1 -0.3634 0.2714 0.9911 30 1 -0.3634 0.7227 -0.7307 31 1 1.4606 0.8428 -2.5862 32 1 0.2283 -0.4201 -2.3521 33 1 1.6596 -0.7481 -3.3587 34 1 1.8243 -2.6973 -1.9246 35 1 -0.5080 -1.7993 1.1039 36 1 -0.0910 -3.1649 2.1667 37 1 0.0742 -1.4942 2.7580 38 1 1.2329 1.4963 2.9836 39 1 1.2870 0.0061 3.9556 40 1 3.3496 0.8089 5.0728 41 1 3.2960 2.2993 4.1012 42 1 1.0842 2.8542 5.0760 43 1 1.1384 1.3636 6.0473 44 1 0.1127 3.9564 8.4530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603372545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:11 Heat of formation + Delta-G solvation = -111.797900 kcal Electronic energy + Delta-G solvation = -26218.753518 eV Core-core repulsion = 22491.170823 eV Total energy + Delta-G solvation = -3727.582695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.01887 -37.88803 -37.09427 -35.90483 -35.41167 -34.73880 -32.44670 -32.23779 -30.43962 -29.09670 -27.88982 -24.89404 -24.79069 -23.63279 -22.04088 -20.69166 -19.63566 -18.82285 -18.04537 -17.66117 -16.75925 -16.57742 -16.05107 -15.78652 -15.61191 -14.97562 -14.58041 -14.44660 -14.35965 -13.93477 -13.79876 -13.20190 -13.00358 -12.86751 -12.72591 -12.62351 -12.40014 -12.28225 -12.14154 -12.03945 -11.98104 -11.83308 -11.70929 -11.42394 -11.27762 -10.92971 -10.92581 -10.92120 -10.49401 -10.30311 -10.00367 -9.64314 -9.42984 -9.28724 -9.04492 -8.43733 -6.08926 -4.12241 0.24449 2.31749 2.44243 2.93150 3.30106 3.34174 3.37241 3.84791 3.99549 4.04848 4.18158 4.39412 4.47992 4.60767 4.72493 4.79851 4.84587 4.87383 5.00907 5.04455 5.12597 5.20412 5.27515 5.33471 5.40411 5.44135 5.55811 5.63765 5.75595 5.76807 5.89237 5.91758 6.09679 6.22064 6.37645 6.48715 6.80788 6.98982 7.52079 7.61790 7.88592 7.90507 8.28802 8.93631 9.52716 11.02193 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024274 B = 0.003164 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.240176 B = 8847.178859 C = 8928.817406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.136 3.864 3 H 0.121 0.879 4 C 0.129 3.871 5 H 0.083 0.917 6 C -0.166 4.166 7 N -0.710 5.710 8 C 0.526 3.474 9 O -0.548 6.548 10 C 0.135 3.865 11 H 0.135 0.865 12 C -0.174 4.174 13 N -1.003 6.003 14 S 2.593 3.407 15 O -0.954 6.954 16 O -0.955 6.955 17 C -0.605 4.605 18 C -0.106 4.106 19 C 0.032 3.968 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.059 3.941 23 N -0.895 5.895 24 Si 0.895 3.105 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.275 1.275 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 -7.969 -20.658 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.030 3.970 3 H 0.139 0.861 4 C 0.022 3.978 5 H 0.101 0.899 6 C -0.224 4.224 7 N -0.362 5.362 8 C 0.311 3.689 9 O -0.425 6.425 10 C 0.026 3.974 11 H 0.153 0.847 12 C -0.232 4.232 13 N -0.839 5.839 14 S 2.692 3.308 15 O -0.945 6.945 16 O -0.945 6.945 17 C -0.738 4.738 18 C -0.146 4.146 19 C -0.006 4.006 20 C -0.566 4.566 21 H 0.076 0.924 22 C -0.143 4.143 23 N -0.534 5.534 24 Si 0.722 3.278 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.234 0.766 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.970 -8.409 -20.396 22.149 hybrid contribution -0.215 0.543 0.638 0.864 sum -2.185 -7.866 -19.759 21.379 Atomic orbital electron populations 1.22545 0.94079 1.02847 1.03586 1.21373 0.95345 0.97144 0.83170 0.86129 1.21320 1.00752 0.80004 0.95680 0.89911 1.22237 1.01308 1.02568 0.96315 1.45471 1.73343 1.08637 1.08748 1.20134 0.75158 0.87474 0.86095 1.90784 1.50635 1.13833 1.87221 1.21179 0.99583 0.80887 0.95758 0.84738 1.22530 0.93836 1.04121 1.02729 1.58471 1.68259 1.20312 1.36864 1.05673 0.75609 0.74482 0.75004 1.93575 1.68537 1.54203 1.78140 1.93565 1.71656 1.60309 1.68966 1.30610 1.15746 1.12581 1.14817 1.21526 0.98922 0.98822 0.95309 1.19052 0.93819 0.95584 0.92177 1.21210 0.93282 1.33264 1.08894 0.92419 1.25009 0.94926 0.96337 0.98015 1.69939 1.07196 1.43545 1.32712 0.86615 0.79842 0.80021 0.81315 1.20108 1.21230 1.20088 0.91367 0.90791 0.90776 0.90258 0.91105 0.91687 0.76556 0.90368 0.90322 0.90434 0.85238 0.85243 0.91546 0.91558 0.96101 0.96081 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 6.31 37.16 0.23 -0.85 16 2 C 0.14 1.12 2.87 -67.51 -0.19 0.92 16 3 H 0.12 0.94 7.07 -51.93 -0.37 0.58 16 4 C 0.13 0.93 3.54 -68.40 -0.24 0.69 16 5 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.17 -0.73 8.71 37.16 0.32 -0.40 16 7 N -0.71 -6.16 4.88 -54.79 -0.27 -6.42 16 8 C 0.53 6.16 6.59 -11.73 -0.08 6.08 16 9 O -0.55 -8.23 17.80 5.55 0.10 -8.13 16 10 C 0.13 1.49 3.07 -68.91 -0.21 1.27 16 11 H 0.14 1.64 6.90 -51.92 -0.36 1.28 16 12 C -0.17 -1.54 8.47 37.15 0.31 -1.23 16 13 N -1.00 -10.74 2.75 -100.73 -0.28 -11.01 16 14 S 2.59 36.36 5.48 -107.50 -0.59 35.78 16 15 O -0.95 -16.32 16.64 -57.54 -0.96 -17.27 16 16 O -0.95 -15.29 16.74 -57.54 -0.96 -16.25 16 17 C -0.61 -8.66 6.18 37.16 0.23 -8.43 16 18 C -0.11 -2.07 5.16 -26.73 -0.14 -2.20 16 19 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 20 C -0.53 -14.60 9.11 -34.44 -0.31 -14.91 16 21 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 24 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 28 H 0.07 0.44 5.33 -51.93 -0.28 0.16 16 29 H 0.07 0.48 7.60 -51.93 -0.39 0.09 16 30 H 0.07 0.34 7.33 -51.93 -0.38 -0.04 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.29 6.57 -51.93 -0.34 -0.05 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.40 2.91 8.61 -40.82 -0.35 2.56 16 35 H 0.08 0.60 4.59 -51.93 -0.24 0.36 16 36 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 37 H 0.08 0.63 7.65 -51.93 -0.40 0.24 16 38 H 0.13 1.59 8.14 -51.93 -0.42 1.16 16 39 H 0.13 1.64 7.65 -51.92 -0.40 1.24 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -35.63 357.52 -9.01 -44.64 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.85 Total: -0.74 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -0.31 Total: -16.86 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.19 Total: -42.82 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -1.82 Total: -41.65 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 36.36 SS G_CDS: -0.59 Total: 35.78 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.63 -9.01 -44.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603372545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.157 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds