Wall clock time and date at job start Tue Mar 31 2020 05:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.21895 * 2 1 4 4 N 1.45653 * 109.21773 * 240.61908 * 2 1 3 5 5 C 1.33384 * 124.59053 * 261.59252 * 4 2 1 6 6 O 1.21278 * 118.48545 * 175.70037 * 5 4 2 7 7 C 1.50434 * 123.02305 * 355.98019 * 5 4 2 8 8 H 1.08998 * 109.57005 * 252.60502 * 7 5 4 9 9 C 1.53003 * 109.56645 * 132.24769 * 7 5 4 10 10 N 1.46938 * 108.95654 * 12.22973 * 7 5 4 11 11 S 1.65600 * 121.21692 * 137.45000 * 10 7 5 12 12 O 1.42096 * 104.27441 * 190.23920 * 11 10 7 13 13 O 1.42096 * 104.27905 * 318.10158 * 11 10 7 14 14 C 1.81407 * 104.44639 * 74.17287 * 11 10 7 15 15 C 1.53001 * 109.47030 * 180.02562 * 14 11 10 16 16 C 1.53001 * 109.47144 * 179.97438 * 15 14 11 17 17 C 1.50701 * 109.46913 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00342 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99815 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00082 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00065 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46978 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46844 * 119.99557 * 21 19 17 24 24 H 1.48498 * 109.47326 * 239.99731 * 21 19 17 25 25 C 1.47260 * 117.42764 * 317.66339 * 10 7 5 26 26 H 1.09002 * 109.72099 * 180.98899 * 25 10 7 27 27 C 1.53003 * 109.75494 * 301.61750 * 25 10 7 28 28 H 1.08994 * 109.47231 * 179.38081 * 1 2 3 29 29 H 1.08998 * 109.46709 * 299.38225 * 1 2 3 30 30 H 1.09000 * 109.46406 * 59.37815 * 1 2 3 31 31 H 0.97003 * 117.70511 * 81.61167 * 4 2 1 32 32 H 1.09001 * 109.47134 * 64.25317 * 9 7 5 33 33 H 1.09004 * 109.46729 * 184.25024 * 9 7 5 34 34 H 1.08994 * 109.47445 * 304.24920 * 9 7 5 35 35 H 1.09003 * 109.46689 * 299.99378 * 14 11 10 36 36 H 1.08995 * 109.47272 * 59.99848 * 14 11 10 37 37 H 1.09007 * 109.47053 * 299.99681 * 15 14 11 38 38 H 1.09002 * 109.47440 * 59.99452 * 15 14 11 39 39 H 1.08995 * 109.47109 * 299.99447 * 16 15 14 40 40 H 1.08995 * 109.47056 * 59.99840 * 16 15 14 41 41 H 0.96996 * 120.00149 * 180.02562 * 20 19 17 42 42 H 1.09006 * 109.47228 * 178.75338 * 27 25 10 43 43 H 1.08991 * 109.47238 * 298.75199 * 27 25 10 44 44 H 1.09003 * 109.47150 * 58.75956 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8888 1.0293 0.0000 4 7 2.0094 -0.6748 -1.1985 5 6 2.4103 -1.9462 -1.2425 6 8 2.7142 -2.4199 -2.3168 7 6 2.4969 -2.8213 -0.0220 8 1 3.5430 -2.9794 0.2404 9 6 1.8287 -4.1676 -0.3082 10 7 1.8102 -2.1547 1.0930 11 16 0.8204 -2.9979 2.1185 12 8 0.1703 -1.9923 2.8836 13 8 0.0823 -3.8598 1.2634 14 6 1.9569 -3.9546 3.1596 15 6 1.1532 -4.7865 4.1611 16 6 2.1118 -5.5939 5.0388 17 6 1.3201 -6.4128 6.0256 18 1 0.2413 -6.3621 6.0270 19 6 1.9732 -7.2259 6.9274 20 7 3.2869 -7.2873 6.9261 21 14 0.9920 -8.2405 8.1511 22 1 -0.4583 -7.9944 7.9479 23 1 1.2836 -9.6820 7.9454 24 1 1.3708 -7.8512 9.5332 25 6 2.0326 -0.7085 1.2594 26 1 1.4814 -0.3492 2.1284 27 6 3.5261 -0.4331 1.4455 28 1 -0.3633 -1.0275 -0.0111 29 1 -0.3633 0.5042 0.8955 30 1 -0.3632 0.5235 -0.8844 31 1 2.0396 -0.1636 -2.0223 32 1 2.3817 -4.6888 -1.0897 33 1 1.8253 -4.7717 0.5991 34 1 0.8032 -4.0015 -0.6380 35 1 2.5529 -4.6177 2.5326 36 1 2.6162 -3.2741 3.6983 37 1 0.5568 -4.1237 4.7882 38 1 0.4941 -5.4670 3.6220 39 1 2.7077 -6.2567 4.4115 40 1 2.7711 -4.9136 5.5778 41 1 3.7463 -7.8596 7.5603 42 1 3.6879 0.6402 1.5460 43 1 3.8798 -0.9394 2.3434 44 1 4.0746 -0.8035 0.5794 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603372547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:13 Heat of formation + Delta-G solvation = -108.515589 kcal Electronic energy + Delta-G solvation = -26454.158552 eV Core-core repulsion = 22726.718188 eV Total energy + Delta-G solvation = -3727.440363 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.92642 -37.82680 -37.25989 -35.90811 -35.21500 -34.73620 -32.42226 -32.21340 -30.25839 -29.13756 -27.89110 -25.05985 -24.14080 -23.57887 -22.51980 -20.66104 -19.67572 -18.58599 -17.94278 -17.68180 -16.76290 -16.43695 -16.08782 -15.69847 -15.67423 -14.91934 -14.53239 -14.40633 -14.31734 -14.18394 -13.59436 -13.51194 -12.76750 -12.73871 -12.65872 -12.61544 -12.34434 -12.19689 -12.02874 -11.98059 -11.87407 -11.79062 -11.60387 -11.45619 -11.27937 -10.96258 -10.87241 -10.70046 -10.44869 -10.31236 -10.01028 -9.58673 -9.43715 -9.26211 -9.02945 -8.44293 -6.08897 -4.12134 0.26532 2.32901 2.44921 2.96324 3.27436 3.35201 3.39811 3.82120 3.99747 4.11605 4.19137 4.39602 4.50796 4.56254 4.71555 4.87988 4.91463 4.98154 5.03651 5.12779 5.18226 5.27702 5.32395 5.41930 5.46016 5.54795 5.64432 5.79159 5.80868 5.86842 5.90497 6.08866 6.21705 6.29465 6.39252 6.50671 6.80805 7.00285 7.52814 7.61943 7.88891 7.92299 8.28873 8.94252 9.52976 11.02312 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.003287 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.690796 B = 8517.622142 C = 8716.483730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.131 3.869 3 H 0.098 0.902 4 N -0.709 5.709 5 C 0.525 3.475 6 O -0.546 6.546 7 C 0.141 3.859 8 H 0.108 0.892 9 C -0.168 4.168 10 N -1.001 6.001 11 S 2.594 3.406 12 O -0.957 6.957 13 O -0.950 6.950 14 C -0.608 4.608 15 C -0.105 4.105 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.132 3.868 26 H 0.127 0.873 27 C -0.165 4.165 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.398 0.602 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.261 0.739 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 17.213 -14.287 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.025 3.975 3 H 0.116 0.884 4 N -0.361 5.361 5 C 0.310 3.690 6 O -0.423 6.423 7 C 0.032 3.968 8 H 0.125 0.875 9 C -0.226 4.226 10 N -0.839 5.839 11 S 2.693 3.307 12 O -0.947 6.947 13 O -0.941 6.941 14 C -0.740 4.740 15 C -0.145 4.145 16 C -0.008 4.008 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.721 3.279 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C 0.026 3.974 26 H 0.145 0.855 27 C -0.224 4.224 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.234 0.766 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.040 0.960 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.679 16.801 -14.562 22.244 hybrid contribution 0.335 -0.469 0.654 0.872 sum -0.344 16.332 -13.908 21.454 Atomic orbital electron populations 1.22332 0.94523 1.03252 1.03042 1.21327 0.94940 0.96517 0.84757 0.88368 1.45398 1.65799 1.12164 1.12737 1.20187 0.75948 0.82248 0.90643 1.90774 1.49867 1.72013 1.29655 1.21119 0.99133 0.93023 0.83520 0.87456 1.22474 1.03238 0.92778 1.04096 1.58322 1.66221 1.16949 1.42365 1.05676 0.75737 0.74792 0.74494 1.93535 1.72107 1.57231 1.71873 1.93653 1.69147 1.67846 1.63408 1.30621 1.15894 1.13675 1.13853 1.21516 0.98928 0.97990 0.96037 1.19068 0.93827 0.94288 0.93588 1.21279 0.93362 1.25176 1.16662 0.92309 1.25016 0.94917 0.96875 0.97533 1.69961 1.07129 1.39283 1.36991 0.86505 0.80392 0.79983 0.80981 1.19581 1.20906 1.20930 1.21473 0.97935 0.79421 0.98587 0.85502 1.22178 0.94513 1.02686 1.03034 0.92173 0.90428 0.91812 0.76613 0.89800 0.90656 0.88731 0.85295 0.85241 0.91587 0.91523 0.96044 0.96094 0.92917 0.90811 0.91083 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.37 37.16 0.35 -1.06 16 2 C 0.13 0.93 3.24 -68.39 -0.22 0.71 16 3 H 0.10 0.41 8.08 -51.93 -0.42 -0.01 16 4 N -0.71 -6.05 4.91 -54.78 -0.27 -6.32 16 5 C 0.52 6.04 6.80 -11.73 -0.08 5.96 16 6 O -0.55 -8.06 17.26 5.56 0.10 -7.96 16 7 C 0.14 1.52 2.91 -68.97 -0.20 1.32 16 8 H 0.11 0.94 7.83 -51.93 -0.41 0.54 16 9 C -0.17 -2.06 7.33 37.16 0.27 -1.78 16 10 N -1.00 -10.69 2.75 -100.81 -0.28 -10.97 16 11 S 2.59 35.98 4.90 -107.50 -0.53 35.46 16 12 O -0.96 -15.02 16.36 -57.54 -0.94 -15.96 16 13 O -0.95 -15.36 13.61 -57.54 -0.78 -16.14 16 14 C -0.61 -8.88 5.99 37.16 0.22 -8.66 16 15 C -0.11 -2.05 5.16 -26.73 -0.14 -2.19 16 16 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 17 C -0.53 -14.57 9.11 -34.44 -0.31 -14.88 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 21 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 C 0.13 1.10 2.64 -67.52 -0.18 0.92 16 26 H 0.13 1.07 6.61 -51.93 -0.34 0.72 16 27 C -0.17 -1.09 9.06 37.16 0.34 -0.75 16 28 H 0.06 0.65 7.99 -51.93 -0.41 0.24 16 29 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.40 2.83 8.80 -40.82 -0.36 2.47 16 32 H 0.08 0.96 8.00 -51.93 -0.42 0.54 16 33 H 0.07 0.91 5.27 -51.93 -0.27 0.64 16 34 H 0.09 1.32 6.77 -51.93 -0.35 0.97 16 35 H 0.13 1.67 7.11 -51.92 -0.37 1.31 16 36 H 0.13 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.42 6.80 -51.93 -0.35 0.07 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -34.76 358.56 -8.82 -43.59 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.05 Total: 0.35 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -0.19 Total: -18.27 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.19 Total: -42.74 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.63 Total: -40.07 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 35.98 SS G_CDS: -0.53 Total: 35.46 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.76 -8.82 -43.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603372547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.928 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds