Wall clock time and date at job start Tue Mar 31 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.66412 * 2 1 4 4 C 1.50809 * 109.71890 * 239.55624 * 2 1 3 5 5 O 1.21275 * 118.47162 * 73.03468 * 4 2 1 6 6 N 1.33381 * 123.03458 * 253.20779 * 4 2 1 7 7 C 1.45642 * 124.59194 * 355.52921 * 6 4 2 8 8 H 1.08998 * 109.21669 * 142.20792 * 7 6 4 9 9 C 1.52999 * 109.18461 * 261.56970 * 7 6 4 10 10 C 1.52997 * 110.77424 * 21.87915 * 7 6 4 11 11 H 1.08999 * 109.71831 * 193.60477 * 10 7 6 12 12 C 1.52998 * 109.71807 * 72.94746 * 10 7 6 13 13 N 1.47053 * 109.56859 * 120.30066 * 2 1 3 14 14 S 1.65599 * 121.34767 * 257.10535 * 13 2 1 15 15 O 1.42108 * 104.27532 * 153.64547 * 14 13 2 16 16 O 1.42099 * 104.28102 * 25.78723 * 14 13 2 17 17 C 1.81403 * 104.44955 * 269.71244 * 14 13 2 18 18 C 1.52994 * 109.47431 * 180.02562 * 17 14 13 19 19 C 1.53001 * 109.47507 * 180.02562 * 18 17 14 20 20 C 1.50690 * 109.47637 * 179.97438 * 19 18 17 21 21 H 1.08008 * 119.99429 * 359.72397 * 20 19 18 22 22 C 1.37873 * 120.00666 * 179.97438 * 20 19 18 23 23 N 1.31508 * 120.00664 * 179.72650 * 22 20 19 24 24 Si 1.86809 * 119.99293 * 359.72632 * 22 20 19 25 25 H 1.48500 * 109.46966 * 90.00195 * 24 22 20 26 26 H 1.48505 * 109.46603 * 210.00013 * 24 22 20 27 27 H 1.48494 * 109.47246 * 329.99857 * 24 22 20 28 28 H 1.09004 * 109.46916 * 291.18094 * 1 2 3 29 29 H 1.08996 * 109.47656 * 51.18066 * 1 2 3 30 30 H 1.09001 * 109.47692 * 171.18569 * 1 2 3 31 31 H 0.97002 * 117.70243 * 175.50550 * 6 4 2 32 32 H 1.08997 * 109.47238 * 181.26420 * 9 7 6 33 33 H 1.09008 * 109.46649 * 301.26225 * 9 7 6 34 34 H 1.08994 * 109.47203 * 61.25405 * 9 7 6 35 35 H 1.08995 * 109.47006 * 315.14761 * 12 10 7 36 36 H 1.08993 * 109.47383 * 75.15030 * 12 10 7 37 37 H 1.08998 * 109.46656 * 195.14799 * 12 10 7 38 38 H 1.08998 * 109.47070 * 60.00058 * 17 14 13 39 39 H 1.09008 * 109.46963 * 300.00559 * 17 14 13 40 40 H 1.08998 * 109.47264 * 59.99787 * 18 17 14 41 41 H 1.08999 * 109.46943 * 300.00005 * 18 17 14 42 42 H 1.09005 * 109.46553 * 59.99455 * 19 18 17 43 43 H 1.09008 * 109.46791 * 300.00110 * 19 18 17 44 44 H 0.97002 * 120.00587 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0388 -0.7193 -1.2239 5 8 1.9411 -0.1692 -2.3003 6 7 2.5883 -1.9338 -1.1776 7 6 2.8522 -2.6758 0.0475 8 1 2.6493 -3.7331 -0.1227 9 6 4.3221 -2.5011 0.4343 10 6 1.9677 -2.1707 1.1891 11 1 2.3369 -2.5571 2.1390 12 6 0.5259 -2.6326 0.9682 13 7 2.0225 -0.6991 1.1963 14 16 2.6084 0.1350 2.5014 15 8 2.3889 -0.7370 3.6019 16 8 1.9632 1.3989 2.4282 17 6 4.3836 0.3062 2.1694 18 6 5.0461 1.0689 3.3183 19 6 6.5432 1.2140 3.0380 20 6 7.1957 1.9658 4.1693 21 1 6.6011 2.3100 5.0027 22 6 8.5507 2.2187 4.1381 23 7 9.1192 2.8794 5.1228 24 14 9.5790 1.6226 2.6970 25 1 9.6111 2.6702 1.6450 26 1 10.9624 1.3420 3.1586 27 1 8.9812 0.3818 2.1419 28 1 -0.3633 0.3713 0.9583 29 1 -0.3634 0.6442 -0.8006 30 1 -0.3634 -1.0155 -0.1575 31 1 2.8286 -2.3524 -2.0191 32 1 4.5303 -3.0729 1.3386 33 1 4.9563 -2.8599 -0.3765 34 1 4.5271 -1.4462 0.6161 35 1 0.2482 -2.4710 -0.0734 36 1 0.4437 -3.6931 1.2057 37 1 -0.1413 -2.0626 1.6148 38 1 4.5278 0.8541 1.2382 39 1 4.8340 -0.6826 2.0826 40 1 4.9019 0.5207 4.2493 41 1 4.5957 2.0577 3.4054 42 1 6.6870 1.7624 2.1070 43 1 6.9939 0.2253 2.9505 44 1 10.0724 3.0577 5.1007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603372549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:15 Heat of formation + Delta-G solvation = -104.655981 kcal Electronic energy + Delta-G solvation = -26650.732608 eV Core-core repulsion = 22923.459610 eV Total energy + Delta-G solvation = -3727.272998 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07541 -37.92003 -37.15676 -35.98664 -35.34697 -34.86001 -32.32980 -32.23580 -30.28096 -29.98298 -28.40504 -24.75698 -24.30397 -23.52004 -22.67427 -20.57599 -19.72553 -18.89805 -17.98474 -17.63628 -17.01828 -16.89737 -16.18275 -15.82957 -15.56161 -14.79874 -14.60557 -14.28988 -14.23650 -14.15273 -13.87634 -13.72452 -13.03689 -13.00086 -12.72520 -12.56066 -12.46171 -12.36426 -12.23129 -12.10672 -12.02938 -11.91788 -11.87155 -11.65074 -11.38810 -11.03222 -10.99902 -10.91071 -10.45896 -10.14596 -9.90412 -9.73579 -9.53310 -9.32835 -9.21829 -8.62089 -6.11642 -4.11258 0.15798 2.24710 2.38506 2.85844 3.24157 3.31811 3.32916 3.75457 3.94890 3.95457 4.09885 4.37163 4.44098 4.57931 4.63958 4.73450 4.80540 4.83628 4.91906 4.98598 5.06797 5.21753 5.23906 5.31794 5.33571 5.41789 5.53530 5.60618 5.69071 5.77281 5.86803 5.89455 6.01312 6.10665 6.18736 6.43627 6.60140 6.93213 7.07195 7.21079 7.67132 7.84558 8.43829 8.92485 9.49368 11.01609 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017927 B = 0.004006 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.541957 B = 6987.465348 C = 7493.170205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 H 0.126 0.874 4 C 0.521 3.479 5 O -0.545 6.545 6 N -0.708 5.708 7 C 0.127 3.873 8 H 0.100 0.900 9 C -0.191 4.191 10 C 0.135 3.865 11 H 0.123 0.877 12 C -0.164 4.164 13 N -1.002 6.002 14 S 2.596 3.404 15 O -0.950 6.950 16 O -0.949 6.949 17 C -0.623 4.623 18 C -0.096 4.096 19 C -0.003 4.003 20 C -0.528 4.528 21 H 0.075 0.925 22 C 0.069 3.931 23 N -0.899 5.899 24 Si 0.879 3.121 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.266 1.266 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.400 0.600 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.016 0.984 43 H 0.020 0.980 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.594 -15.151 -12.203 25.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.144 0.856 4 C 0.305 3.695 5 O -0.422 6.422 6 N -0.360 5.360 7 C 0.021 3.979 8 H 0.118 0.882 9 C -0.249 4.249 10 C 0.029 3.971 11 H 0.140 0.860 12 C -0.223 4.223 13 N -0.839 5.839 14 S 2.694 3.306 15 O -0.940 6.940 16 O -0.940 6.940 17 C -0.754 4.754 18 C -0.135 4.135 19 C -0.042 4.042 20 C -0.566 4.566 21 H 0.093 0.907 22 C -0.133 4.133 23 N -0.538 5.538 24 Si 0.707 3.293 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.191 1.191 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.235 0.765 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.034 0.966 43 H 0.038 0.962 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.076 -14.370 -11.735 25.215 hybrid contribution 1.515 -0.568 -1.419 2.152 sum -15.560 -14.939 -13.154 25.265 Atomic orbital electron populations 1.22416 0.91930 1.03989 1.04068 1.21138 0.97074 0.97009 0.81277 0.85595 1.20352 0.76884 0.81421 0.90797 1.90792 1.56658 1.64845 1.29929 1.45387 1.62759 1.17854 1.09962 1.21394 0.95441 0.96401 0.84706 0.88213 1.22647 0.95246 1.03904 1.03092 1.21428 0.96824 0.79153 0.99729 0.85958 1.22399 0.95267 1.01930 1.02681 1.58495 1.77688 1.14722 1.32958 1.05605 0.78001 0.73858 0.73116 1.93579 1.85072 1.65973 1.49390 1.93593 1.72774 1.42109 1.85484 1.30868 1.23289 1.10857 1.10415 1.21317 0.99917 0.98754 0.93534 1.19523 0.89869 0.97197 0.97619 1.21113 0.93718 1.35728 1.06027 0.90712 1.25010 0.97865 0.94523 0.95893 1.69902 1.11489 1.40453 1.31937 0.86792 0.79665 0.79809 0.83079 1.20190 1.21226 1.19103 0.90338 0.90566 0.90609 0.76455 0.90342 0.91213 0.91248 0.91519 0.91035 0.90863 0.85329 0.84887 0.90899 0.90957 0.96619 0.96180 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 8.47 37.16 0.31 -1.16 16 2 C 0.14 1.49 2.80 -68.73 -0.19 1.30 16 3 H 0.13 1.37 7.47 -51.93 -0.39 0.98 16 4 C 0.52 5.57 6.61 -11.55 -0.08 5.49 16 5 O -0.55 -7.80 17.80 5.56 0.10 -7.70 16 6 N -0.71 -5.42 4.76 -54.65 -0.26 -5.68 16 7 C 0.13 0.77 3.22 -68.40 -0.22 0.55 16 8 H 0.10 0.34 8.08 -51.93 -0.42 -0.08 16 9 C -0.19 -1.33 8.99 37.16 0.33 -1.00 16 10 C 0.13 1.02 2.58 -67.52 -0.17 0.84 16 11 H 0.12 0.89 6.95 -51.93 -0.36 0.53 16 12 C -0.16 -1.01 7.59 37.16 0.28 -0.73 16 13 N -1.00 -10.07 2.49 -100.54 -0.25 -10.32 16 14 S 2.60 34.93 5.45 -107.50 -0.59 34.34 16 15 O -0.95 -14.63 16.71 -57.54 -0.96 -15.59 16 16 O -0.95 -15.42 16.97 -57.54 -0.98 -16.40 16 17 C -0.62 -8.63 5.06 37.15 0.19 -8.44 16 18 C -0.10 -1.80 5.16 -26.73 -0.14 -1.94 16 19 C 0.00 -0.08 4.04 -27.89 -0.11 -0.19 16 20 C -0.53 -14.79 9.66 -34.45 -0.33 -15.13 16 21 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 22 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 23 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 24 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.56 4.55 -51.93 -0.24 0.32 16 31 H 0.40 2.60 8.80 -40.82 -0.36 2.24 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.07 0.60 4.73 -51.93 -0.25 0.35 16 35 H 0.07 0.40 5.41 -51.93 -0.28 0.12 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.51 7.58 -51.93 -0.39 0.12 16 38 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.13 1.56 5.91 -51.92 -0.31 1.26 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.02 0.35 7.58 -51.93 -0.39 -0.05 16 43 H 0.02 0.44 7.19 -51.92 -0.37 0.07 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -36.10 351.70 -8.48 -44.59 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.73 Total: 0.09 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -0.23 Total: -18.51 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.26 Total: -42.66 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -1.84 Total: -39.69 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 34.93 SS G_CDS: -0.59 Total: 34.34 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.10 -8.48 -44.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603372549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.071 kcal (2) G-P(sol) polarization free energy of solvation -36.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds