Wall clock time and date at job start Tue Mar 31 2020 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.57047 * 2 1 4 4 C 1.50440 * 109.66514 * 239.69485 * 2 1 3 5 5 O 1.21280 * 118.48723 * 47.44163 * 4 2 1 6 6 N 1.33383 * 123.02323 * 227.41444 * 4 2 1 7 7 C 1.46496 * 117.70135 * 184.30228 * 6 4 2 8 8 C 1.45643 * 124.59018 * 4.31807 * 6 4 2 9 9 H 1.08996 * 109.21866 * 217.81114 * 8 6 4 10 10 C 1.53006 * 109.21424 * 98.43491 * 8 6 4 11 11 C 1.53472 * 110.74012 * 337.98274 * 8 6 4 12 12 H 1.09000 * 109.85041 * 287.31556 * 11 8 6 13 13 C 1.53006 * 109.83743 * 166.49904 * 11 8 6 14 14 N 1.47050 * 109.56465 * 120.23409 * 2 1 3 15 15 S 1.65608 * 121.35334 * 342.65475 * 14 2 1 16 16 O 1.42101 * 104.27718 * 154.41264 * 15 14 2 17 17 O 1.42091 * 104.27444 * 26.55268 * 15 14 2 18 18 C 1.81403 * 104.44830 * 270.48028 * 15 14 2 19 19 C 1.52996 * 109.46902 * 179.97438 * 18 15 14 20 20 C 1.50697 * 109.47222 * 180.02562 * 19 18 15 21 21 H 1.08004 * 119.99509 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00527 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99435 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00249 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47387 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47461 * 119.99991 * 24 22 20 27 27 H 1.48498 * 109.47238 * 240.00010 * 24 22 20 28 28 H 1.08999 * 109.47525 * 303.48465 * 1 2 3 29 29 H 1.09005 * 109.46873 * 63.48615 * 1 2 3 30 30 H 1.09001 * 109.47645 * 183.48466 * 1 2 3 31 31 H 1.08995 * 109.47456 * 359.97438 * 7 6 4 32 32 H 1.08998 * 109.47151 * 120.00044 * 7 6 4 33 33 H 1.09005 * 109.46973 * 239.99485 * 7 6 4 34 34 H 1.08995 * 109.46853 * 60.00254 * 10 8 6 35 35 H 1.09001 * 109.46867 * 179.97438 * 10 8 6 36 36 H 1.09005 * 109.47014 * 299.99877 * 10 8 6 37 37 H 1.08995 * 109.47271 * 312.35611 * 13 11 8 38 38 H 1.08998 * 109.46516 * 72.35577 * 13 11 8 39 39 H 1.09001 * 109.46528 * 192.34919 * 13 11 8 40 40 H 1.09001 * 109.46732 * 60.00060 * 18 15 14 41 41 H 1.08996 * 109.47217 * 300.00111 * 18 15 14 42 42 H 1.08996 * 109.47499 * 300.00212 * 19 18 15 43 43 H 1.09001 * 109.47155 * 60.00593 * 19 18 15 44 44 H 0.96999 * 119.99589 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0362 -0.7149 -1.2231 5 8 1.5520 -0.4343 -2.2990 6 7 2.9935 -1.6426 -1.1787 7 6 3.4655 -2.1956 -2.4505 8 6 3.6021 -2.1448 0.0455 9 1 4.6659 -2.3105 -0.1245 10 6 2.9412 -3.4702 0.4296 11 6 3.4274 -1.1390 1.1915 12 1 4.0816 -0.2815 1.0344 13 6 3.7636 -1.8085 2.5256 14 7 2.0224 -0.6977 1.1971 15 16 1.0390 -0.9699 2.5015 16 8 1.6002 -2.1136 3.1309 17 8 -0.2707 -1.0050 1.9515 18 6 1.2525 0.4994 3.5438 19 6 0.3837 0.3668 4.7961 20 6 0.5606 1.5877 5.6617 21 1 1.2259 2.3791 5.3495 22 6 -0.1267 1.6943 6.8522 23 7 -0.9364 0.7302 7.2325 24 14 0.0920 3.2079 7.9247 25 1 1.0502 4.1393 7.2770 26 1 -1.2177 3.8864 8.0966 27 1 0.6171 2.8016 9.2531 28 1 -0.3634 0.5670 0.8571 29 1 -0.3633 0.4588 -0.9196 30 1 -0.3634 -1.0257 0.0625 31 1 2.9231 -1.7294 -3.2730 32 1 4.5318 -1.9975 -2.5595 33 1 3.2925 -3.2717 -2.4654 34 1 3.0842 -4.1935 -0.3732 35 1 3.3941 -3.8500 1.3454 36 1 1.8748 -3.3113 0.5899 37 1 3.2571 -2.7717 2.5866 38 1 4.8408 -1.9594 2.5950 39 1 3.4324 -1.1711 3.3455 40 1 0.9529 1.3869 2.9864 41 1 2.2990 0.5893 3.8349 42 1 -0.6627 0.2771 4.5046 43 1 0.6830 -0.5207 5.3537 44 1 -1.4203 0.8054 8.0698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603422142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:07 Heat of formation + Delta-G solvation = -64.466802 kcal Electronic energy + Delta-G solvation = -27126.185586 eV Core-core repulsion = 23400.655321 eV Total energy + Delta-G solvation = -3725.530265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.90022 -37.99624 -37.06155 -35.85342 -35.33646 -33.95019 -32.85284 -31.23093 -30.06680 -28.10206 -27.69250 -25.66409 -24.88070 -23.79224 -21.80153 -21.38465 -19.35771 -18.28031 -17.93320 -17.03258 -16.77465 -15.96130 -15.72013 -15.58325 -15.40326 -15.34033 -14.59308 -14.50391 -14.04644 -13.59430 -13.37571 -13.26428 -13.16688 -12.82046 -12.65501 -12.54187 -12.36561 -12.16857 -11.86970 -11.83561 -11.73633 -11.60447 -11.49049 -11.13055 -10.97148 -10.90846 -10.54854 -10.43217 -10.31218 -10.02583 -9.95527 -9.78209 -9.33927 -8.99962 -8.80435 -8.54694 -6.16711 -4.22432 0.63026 2.45817 2.63165 2.96514 3.22646 3.30329 3.33411 4.14785 4.18839 4.26142 4.34463 4.43309 4.66055 4.81915 4.90301 5.02894 5.11452 5.18148 5.18790 5.20577 5.29279 5.40909 5.47677 5.53962 5.58460 5.63385 5.66908 5.72160 5.88537 6.00784 6.04028 6.10067 6.18504 6.40777 6.49346 6.57734 6.63717 7.23425 7.24380 7.29850 7.76527 7.98409 8.12693 8.81231 9.42838 10.94264 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024682 B = 0.003905 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.179355 B = 7168.515202 C = 7531.024330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.104 0.896 4 C 0.519 3.481 5 O -0.546 6.546 6 N -0.600 5.600 7 C 0.068 3.932 8 C 0.133 3.867 9 H 0.094 0.906 10 C -0.170 4.170 11 C 0.146 3.854 12 H 0.085 0.915 13 C -0.182 4.182 14 N -1.004 6.004 15 S 2.580 3.420 16 O -0.955 6.955 17 O -0.955 6.955 18 C -0.589 4.589 19 C 0.030 3.970 20 C -0.520 4.520 21 H 0.062 0.938 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.033 0.967 43 H 0.033 0.967 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.905 -5.455 -15.028 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.122 0.878 4 C 0.306 3.694 5 O -0.423 6.423 6 N -0.332 5.332 7 C -0.074 4.074 8 C 0.027 3.973 9 H 0.112 0.888 10 C -0.228 4.228 11 C 0.039 3.961 12 H 0.103 0.897 13 C -0.240 4.240 14 N -0.841 5.841 15 S 2.682 3.318 16 O -0.946 6.946 17 O -0.945 6.945 18 C -0.723 4.723 19 C -0.009 4.009 20 C -0.560 4.560 21 H 0.080 0.920 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.979 -6.157 -15.343 19.846 hybrid contribution 0.539 1.440 0.760 1.715 sum 11.518 -4.717 -14.583 19.173 Atomic orbital electron populations 1.22549 0.89183 1.06447 1.03489 1.21169 0.97588 0.96132 0.81585 0.87800 1.20352 0.78696 0.79375 0.91001 1.90690 1.56767 1.64988 1.29886 1.47173 1.38399 1.40009 1.07595 1.21789 0.99597 0.99039 0.87015 1.21427 0.97695 0.94460 0.83669 0.88824 1.22354 1.02193 0.96023 1.02274 1.21434 0.82044 0.96377 0.96206 0.89742 1.22859 1.02389 1.05307 0.93431 1.58403 1.22534 1.72925 1.30252 1.06165 0.73732 0.78221 0.73694 1.93608 1.77371 1.47300 1.76283 1.93702 1.38316 1.87514 1.74977 1.30520 1.10481 1.17775 1.13483 1.18957 0.93799 0.99694 0.88498 1.21031 1.26905 1.03596 1.04462 0.92000 1.25064 0.94924 0.96688 0.97757 1.69962 1.27641 1.32387 1.22791 0.86423 0.78117 0.82566 0.80262 1.19626 1.20751 1.20763 0.89279 0.91090 0.89037 0.89030 0.92209 0.92233 0.92366 0.89705 0.92124 0.86526 0.91431 0.91172 0.86299 0.86287 0.94871 0.94851 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 7.32 37.16 0.27 -2.05 16 2 C 0.14 1.89 3.70 -68.91 -0.25 1.63 16 3 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.52 7.11 7.10 -11.73 -0.08 7.02 16 5 O -0.55 -8.85 15.30 5.56 0.09 -8.76 16 6 N -0.60 -6.69 2.80 -174.80 -0.49 -7.18 16 7 C 0.07 0.61 10.36 59.84 0.62 1.23 16 8 C 0.13 1.26 2.85 -68.14 -0.19 1.07 16 9 H 0.09 0.63 8.07 -51.93 -0.42 0.21 16 10 C -0.17 -1.74 8.65 37.16 0.32 -1.42 16 11 C 0.15 1.53 3.31 -67.26 -0.22 1.30 16 12 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 13 C -0.18 -2.00 7.22 37.16 0.27 -1.73 16 14 N -1.00 -13.11 2.98 -100.47 -0.30 -13.41 16 15 S 2.58 43.13 4.65 -107.50 -0.50 42.63 16 16 O -0.96 -17.02 12.98 -57.54 -0.75 -17.77 16 17 O -0.95 -18.19 12.35 -57.54 -0.71 -18.90 16 18 C -0.59 -10.73 5.98 37.16 0.22 -10.50 16 19 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 20 C -0.52 -14.02 9.11 -34.44 -0.31 -14.33 16 21 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 24 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 H 0.09 1.34 6.51 -51.93 -0.34 1.00 16 29 H 0.07 0.98 7.78 -51.93 -0.40 0.57 16 30 H 0.09 1.51 6.51 -51.93 -0.34 1.17 16 31 H 0.09 0.96 6.59 -51.93 -0.34 0.62 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 34 H 0.06 0.51 7.75 -51.93 -0.40 0.11 16 35 H 0.08 0.80 6.00 -51.93 -0.31 0.49 16 36 H 0.06 0.79 7.99 -51.93 -0.42 0.37 16 37 H 0.12 1.46 3.66 -51.93 -0.19 1.27 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.88 5.71 -51.93 -0.30 0.58 16 40 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 41 H 0.12 1.93 7.33 -51.93 -0.38 1.55 16 42 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -33.43 345.93 -8.07 -41.50 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.74 Total: 1.78 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 0.40 Total: -15.68 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.05 Total: -45.80 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -1.37 Total: -45.43 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 43.13 SS G_CDS: -0.50 Total: 42.63 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.43 -8.07 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603422142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.966 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds