Wall clock time and date at job start Tue Mar 31 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46847 * 2 1 4 4 C 1.52994 * 109.47118 * 240.00390 * 2 1 3 5 5 C 1.50704 * 109.47505 * 64.99957 * 4 2 1 6 6 O 1.21277 * 119.99664 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00258 * 180.02562 * 5 4 2 8 8 C 1.46501 * 120.00069 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47006 * 179.97438 * 8 7 5 10 10 O 1.21289 * 119.99963 * 0.02562 * 9 8 7 11 11 N 1.34769 * 119.99830 * 180.02562 * 9 8 7 12 12 C 1.37104 * 120.00390 * 180.02562 * 11 9 8 13 13 H 1.07997 * 119.98989 * 0.02562 * 12 11 9 14 14 C 1.38946 * 120.00494 * 179.97438 * 12 11 9 15 15 N 1.31410 * 119.99702 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00017 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47176 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47077 * 120.00139 * 16 14 12 19 19 H 1.48497 * 109.47004 * 239.99994 * 16 14 12 20 20 C 1.50698 * 109.47193 * 119.99921 * 2 1 3 21 21 O 1.21252 * 119.99712 * 95.00103 * 20 2 1 22 22 C 1.47166 * 120.00376 * 275.00038 * 20 2 1 23 23 C 1.39847 * 120.17168 * 180.02562 * 22 20 2 24 24 C 1.37886 * 119.82116 * 180.02562 * 23 22 20 25 25 C 1.38406 * 120.17708 * 359.97438 * 24 23 22 26 26 C 1.38403 * 120.34455 * 0.28152 * 25 24 23 27 27 C 1.37892 * 120.17250 * 359.47904 * 26 25 24 28 28 H 1.08998 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46550 * 300.00173 * 1 2 3 30 30 H 1.09006 * 109.47086 * 59.99673 * 1 2 3 31 31 H 1.09005 * 109.47644 * 185.00036 * 4 2 1 32 32 H 1.09005 * 109.47251 * 304.99689 * 4 2 1 33 33 H 0.97003 * 119.99485 * 359.97438 * 7 5 4 34 34 H 1.08992 * 109.46937 * 300.00436 * 8 7 5 35 35 H 1.09004 * 109.46425 * 60.00364 * 8 7 5 36 36 H 0.97000 * 120.00346 * 359.97438 * 11 9 8 37 37 H 0.97000 * 119.99661 * 179.97438 * 15 14 12 38 38 H 1.07992 * 120.09103 * 359.97438 * 23 22 20 39 39 H 1.08001 * 119.91179 * 179.97438 * 24 23 22 40 40 H 1.08002 * 119.82516 * 179.97438 * 25 24 23 41 41 H 1.08005 * 119.91196 * 179.72500 * 26 25 24 42 42 H 1.07999 * 120.08484 * 180.23018 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9845 -0.3917 -3.7002 8 6 1.5964 0.3646 -4.8934 9 6 2.0989 -0.3457 -6.1238 10 8 2.7196 -1.3820 -6.0149 11 7 1.8585 0.1706 -7.3453 12 6 2.3152 -0.4758 -8.4648 13 1 2.8671 -1.3990 -8.3678 14 6 2.0669 0.0562 -9.7242 15 7 1.3948 1.1793 -9.8421 16 14 2.6897 -0.8242 -11.2494 17 1 3.4126 -2.0579 -10.8483 18 1 1.5397 -1.1849 -12.1170 19 1 3.6114 0.0698 -11.9953 20 6 2.0324 -0.7104 1.2305 21 8 2.3207 -1.8868 1.1760 22 6 2.1729 0.0237 2.4982 23 6 2.6393 -0.6319 3.6420 24 6 2.7677 0.0628 4.8262 25 6 2.4370 1.4055 4.8845 26 6 1.9698 2.0601 3.7581 27 6 1.8405 1.3805 2.5652 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.1264 -0.7994 -1.2057 32 1 1.6054 -1.7197 -1.2952 33 1 2.4884 -1.2156 -3.7908 34 1 0.5102 0.4428 -4.9366 35 1 2.0312 1.3632 -4.8477 36 1 1.3618 0.9992 -7.4325 37 1 1.2218 1.5508 -10.7213 38 1 2.8973 -1.6796 3.5983 39 1 3.1273 -0.4422 5.7105 40 1 2.5394 1.9440 5.8150 41 1 1.7096 3.1069 3.8126 42 1 1.4793 1.8936 1.6862 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000672330882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:47 Heat of formation + Delta-G solvation = -96.242054 kcal Electronic energy + Delta-G solvation = -24939.054461 eV Core-core repulsion = 21076.702366 eV Total energy + Delta-G solvation = -3862.352094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.67021 -39.59000 -38.52941 -38.09791 -34.75282 -34.26448 -33.66786 -31.68556 -31.39783 -31.33124 -28.96701 -26.86168 -25.47749 -24.42991 -23.16430 -22.35351 -20.28171 -19.68618 -19.30430 -18.18225 -17.94831 -17.00580 -16.06191 -15.98480 -15.76427 -15.55938 -15.22346 -15.08682 -14.70883 -14.49458 -14.29818 -14.16463 -13.96702 -13.81584 -13.42177 -13.09540 -12.94294 -12.63958 -12.31096 -12.20362 -12.06999 -11.75990 -11.65007 -11.51107 -11.33682 -11.15928 -11.14138 -10.41882 -10.33862 -9.94518 -9.66337 -9.60645 -9.40240 -9.36479 -8.81249 -8.65184 -8.11802 -6.53147 -3.95136 0.30406 0.96951 2.10669 2.78057 3.09369 3.19727 3.23207 3.29995 3.43265 3.72271 3.80027 4.10965 4.37452 4.47623 4.53663 4.64483 4.80791 4.84390 4.87030 4.99788 5.02526 5.15389 5.15656 5.30129 5.43636 5.52212 5.53458 5.57599 5.71136 5.86295 5.89215 5.93619 5.95000 6.01537 6.03488 6.05290 6.18482 6.47216 6.66788 7.23782 7.44931 7.77366 7.90769 8.39738 8.44504 9.03254 9.37585 9.85408 10.63796 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.038878 B = 0.001903 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.025406 B =14711.113961 C =15070.201369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 H 0.107 0.893 4 C -0.130 4.130 5 C 0.514 3.486 6 O -0.549 6.549 7 N -0.707 5.707 8 C 0.109 3.891 9 C 0.427 3.573 10 O -0.597 6.597 11 N -0.549 5.549 12 C -0.305 4.305 13 H 0.106 0.894 14 C 0.025 3.975 15 N -0.894 5.894 16 Si 0.933 3.067 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.402 3.598 21 O -0.450 6.450 22 C -0.167 4.167 23 C -0.063 4.063 24 C -0.135 4.135 25 C -0.090 4.090 26 C -0.134 4.134 27 C -0.071 4.071 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.412 0.588 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.463 2.336 26.661 26.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 H 0.125 0.875 4 C -0.170 4.170 5 C 0.300 3.700 6 O -0.428 6.428 7 N -0.360 5.360 8 C -0.019 4.019 9 C 0.213 3.787 10 O -0.483 6.483 11 N -0.184 5.184 12 C -0.434 4.434 13 H 0.124 0.876 14 C -0.178 4.178 15 N -0.535 5.535 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.279 3.721 21 O -0.324 6.324 22 C -0.168 4.168 23 C -0.081 4.081 24 C -0.153 4.153 25 C -0.108 4.108 26 C -0.152 4.152 27 C -0.089 4.089 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.250 0.750 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.399 1.855 26.552 26.620 hybrid contribution 0.238 -0.096 -0.911 0.946 sum -0.161 1.760 25.641 25.702 Atomic orbital electron populations 1.21870 0.91564 1.02654 1.04264 1.21342 0.98914 1.01425 0.91872 0.87545 1.21530 1.03366 1.00666 0.91420 1.20442 0.79435 0.85644 0.84476 1.90639 1.40606 1.24790 1.86776 1.45746 1.57100 1.28363 1.04813 1.20955 1.00820 0.95582 0.84546 1.19762 0.86565 0.87809 0.84584 1.90503 1.46208 1.25634 1.85997 1.41807 1.48412 1.23848 1.04348 1.19788 1.32901 1.07659 0.83074 0.87609 1.25330 0.96744 0.96206 0.99475 1.69622 1.39360 1.19061 1.25430 0.85752 0.78479 0.79324 0.80504 1.19123 1.20605 1.20605 1.22570 0.72945 0.87775 0.88785 1.90519 1.38029 1.17252 1.86613 1.20539 1.05400 0.95306 0.95563 1.21459 0.94645 1.00384 0.91624 1.21171 1.01376 0.94745 0.98012 1.21456 0.96126 0.94666 0.98595 1.21201 1.00643 1.00507 0.92803 1.21621 0.95621 0.93077 0.98554 0.92552 0.92251 0.88880 0.88540 0.87838 0.75005 0.89824 0.89840 0.77045 0.91635 0.84910 0.85426 0.85596 0.85253 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.92 37.16 0.33 -1.16 16 2 C -0.12 -1.21 1.66 -91.77 -0.15 -1.36 16 3 H 0.11 1.04 6.56 -51.93 -0.34 0.70 16 4 C -0.13 -1.50 4.62 -27.88 -0.13 -1.63 16 5 C 0.51 7.50 7.55 -10.98 -0.08 7.41 16 6 O -0.55 -9.09 13.96 5.56 0.08 -9.01 16 7 N -0.71 -11.39 5.53 -61.47 -0.34 -11.73 16 8 C 0.11 1.95 6.15 -5.19 -0.03 1.92 16 9 C 0.43 9.72 7.85 -10.99 -0.09 9.63 16 10 O -0.60 -15.25 15.24 5.55 0.08 -15.16 16 11 N -0.55 -13.54 5.29 -10.97 -0.06 -13.60 16 12 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 13 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 14 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 15 N -0.89 -23.78 13.05 55.50 0.72 -23.05 16 16 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 20 C 0.40 4.33 6.23 -30.69 -0.19 4.14 16 21 O -0.45 -5.94 16.19 5.58 0.09 -5.85 16 22 C -0.17 -1.57 5.87 -105.07 -0.62 -2.19 16 23 C -0.06 -0.55 9.60 -39.11 -0.38 -0.92 16 24 C -0.14 -0.92 10.03 -39.65 -0.40 -1.32 16 25 C -0.09 -0.55 10.04 -39.46 -0.40 -0.95 16 26 C -0.13 -0.87 10.03 -39.65 -0.40 -1.27 16 27 C -0.07 -0.55 9.37 -39.10 -0.37 -0.92 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.12 5.95 -51.93 -0.31 0.81 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.10 1.16 8.03 -51.93 -0.42 0.74 16 33 H 0.41 6.64 7.44 -40.82 -0.30 6.33 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.13 1.14 7.65 -52.49 -0.40 0.74 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 42 H 0.14 0.91 6.48 -52.49 -0.34 0.57 16 LS Contribution 363.58 15.07 5.48 5.48 Total: -1.00 -31.99 363.58 -7.42 -39.41 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -5.33 Total: 14.49 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -3.13 Total: 3.55 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.33 Total: -48.38 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: 0.25 Total: -30.03 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.99 -7.42 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000672330882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.829 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds