Wall clock time and date at job start Tue Mar 31 2020 05:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47477 * 2 1 4 4 C 1.53002 * 109.47316 * 120.00477 * 2 1 3 5 5 C 1.50694 * 109.46980 * 294.99565 * 4 2 1 6 6 O 1.21293 * 120.00298 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00309 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00442 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.47449 * 179.97438 * 8 7 5 10 10 O 1.21291 * 119.99490 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00329 * 179.97438 * 9 8 7 12 12 C 1.37099 * 120.00436 * 179.97438 * 11 9 8 13 13 H 1.08002 * 119.99484 * 0.02562 * 12 11 9 14 14 C 1.38950 * 119.99998 * 179.97438 * 12 11 9 15 15 N 1.31415 * 119.99351 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00119 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.46870 * 90.00267 * 16 14 12 18 18 H 1.48506 * 109.46692 * 209.99770 * 16 14 12 19 19 H 1.48493 * 109.47238 * 330.00080 * 16 14 12 20 20 C 1.50704 * 109.47032 * 240.00521 * 2 1 3 21 21 O 1.21256 * 119.99507 * 269.99839 * 20 2 1 22 22 C 1.47166 * 120.00398 * 89.99551 * 20 2 1 23 23 C 1.39846 * 120.17201 * 179.97438 * 22 20 2 24 24 C 1.37891 * 119.82489 * 179.75025 * 23 22 20 25 25 C 1.38412 * 120.16717 * 0.25583 * 24 23 22 26 26 C 1.38402 * 120.34971 * 359.97438 * 25 24 23 27 27 C 1.37883 * 120.17569 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.46915 * 299.99475 * 1 2 3 29 29 H 1.08994 * 109.47413 * 59.99739 * 1 2 3 30 30 H 1.09004 * 109.46784 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47220 * 55.00042 * 4 2 1 32 32 H 1.09003 * 109.46932 * 174.99925 * 4 2 1 33 33 H 0.97001 * 119.99859 * 359.97438 * 7 5 4 34 34 H 1.08995 * 109.47016 * 299.99777 * 8 7 5 35 35 H 1.09003 * 109.47378 * 59.99808 * 8 7 5 36 36 H 0.97005 * 119.99883 * 359.97438 * 11 9 8 37 37 H 0.97003 * 119.99775 * 179.97438 * 15 14 12 38 38 H 1.08002 * 120.09198 * 0.03340 * 23 22 20 39 39 H 1.07994 * 119.91964 * 180.28383 * 24 23 22 40 40 H 1.08001 * 119.81783 * 180.02562 * 25 24 23 41 41 H 1.08002 * 119.90871 * 180.02562 * 26 25 24 42 42 H 1.07998 * 120.08969 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6415 0.0569 2.4765 6 8 1.0110 1.0869 2.3634 7 7 1.9855 -0.3915 3.7000 8 6 1.5976 0.3647 4.8932 9 6 2.1000 -0.3457 6.1237 10 8 2.7207 -1.3820 6.0146 11 7 1.8597 0.1705 7.3452 12 6 2.3164 -0.4760 8.4646 13 1 2.8690 -1.3988 8.3675 14 6 2.0691 0.0565 9.7240 15 7 2.5073 -0.5630 10.7969 16 14 1.1138 1.6530 9.8918 17 1 -0.3358 1.3525 10.0073 18 1 1.5678 2.3760 11.1070 19 1 1.3501 2.4994 8.6949 20 6 2.0323 -0.7103 -1.2306 21 8 2.2344 -1.9055 -1.2005 22 6 2.2775 0.0466 -2.4686 23 6 2.7441 -0.6089 -3.6124 24 6 2.9666 0.1064 -4.7701 25 6 2.7342 1.4705 -4.8003 26 6 2.2769 2.1272 -3.6711 27 6 2.0497 1.4260 -2.5059 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6055 -1.7199 1.2950 32 1 3.1264 -0.7995 1.2054 33 1 2.4893 -1.2154 3.7906 34 1 2.0315 1.3635 4.8473 35 1 0.5112 0.4422 4.9371 36 1 1.3637 0.9995 7.4324 37 1 2.3350 -0.1911 11.6761 38 1 2.9255 -1.6734 -3.5905 39 1 3.3225 -0.3991 -5.6556 40 1 2.9099 2.0252 -5.7102 41 1 2.0975 3.1918 -3.7028 42 1 1.6925 1.9397 -1.6256 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000672330883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:49 Heat of formation + Delta-G solvation = -88.656986 kcal Electronic energy + Delta-G solvation = -25000.205519 eV Core-core repulsion = 21138.182338 eV Total energy + Delta-G solvation = -3862.023181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70705 -39.67803 -38.60454 -38.24480 -34.82121 -34.32214 -33.75633 -31.83614 -31.69919 -31.35991 -29.10739 -27.01779 -25.52109 -24.29241 -23.19942 -22.35363 -20.34823 -19.72334 -19.40520 -18.64010 -18.02896 -17.02907 -16.11739 -16.00156 -15.80642 -15.70774 -15.23464 -15.13810 -14.88580 -14.59959 -14.45416 -14.24965 -13.98501 -13.58278 -13.39749 -13.07180 -12.99536 -12.69678 -12.52358 -12.36890 -12.19670 -12.11223 -11.85369 -11.55514 -11.38861 -11.25361 -11.16309 -10.66516 -10.08520 -10.00327 -9.72154 -9.66690 -9.42786 -9.39071 -8.91955 -8.79965 -8.32694 -6.42647 -3.95373 0.27686 0.94557 2.07603 2.69562 2.97449 3.02095 3.09744 3.15389 3.40717 3.53670 3.74923 4.01555 4.34085 4.43447 4.51024 4.52063 4.61627 4.76438 4.81812 4.96838 4.98008 5.10703 5.11907 5.26233 5.39937 5.48031 5.48772 5.55047 5.62138 5.69809 5.74885 5.77913 5.83708 5.91963 5.99004 6.01196 6.12860 6.44782 6.54343 7.20827 7.41759 7.68462 7.98200 8.30711 8.43671 8.79705 9.27605 9.61023 10.69482 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.032853 B = 0.002018 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.071322 B =13870.682058 C =14306.898849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 H 0.105 0.895 4 C -0.130 4.130 5 C 0.515 3.485 6 O -0.549 6.549 7 N -0.707 5.707 8 C 0.106 3.894 9 C 0.437 3.563 10 O -0.578 6.578 11 N -0.576 5.576 12 C -0.311 4.311 13 H 0.122 0.878 14 C 0.045 3.955 15 N -0.873 5.873 16 Si 0.880 3.120 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.267 1.267 20 C 0.402 3.598 21 O -0.449 6.449 22 C -0.168 4.168 23 C -0.063 4.063 24 C -0.135 4.135 25 C -0.090 4.090 26 C -0.134 4.134 27 C -0.071 4.071 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.413 0.587 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.374 0.626 37 H 0.276 0.724 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 6.446 -29.130 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 H 0.124 0.876 4 C -0.170 4.170 5 C 0.302 3.698 6 O -0.428 6.428 7 N -0.361 5.361 8 C -0.022 4.022 9 C 0.223 3.777 10 O -0.463 6.463 11 N -0.214 5.214 12 C -0.439 4.439 13 H 0.139 0.861 14 C -0.159 4.159 15 N -0.512 5.512 16 Si 0.706 3.294 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.193 1.193 20 C 0.279 3.721 21 O -0.323 6.323 22 C -0.169 4.169 23 C -0.081 4.081 24 C -0.153 4.153 25 C -0.108 4.108 26 C -0.152 4.152 27 C -0.089 4.089 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.251 0.749 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.207 0.793 37 H 0.086 0.914 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.457 5.822 -28.965 29.646 hybrid contribution -0.410 0.987 0.419 1.148 sum -2.867 6.808 -28.546 29.486 Atomic orbital electron populations 1.21858 0.91568 1.02692 1.04202 1.21348 0.98925 1.01392 0.91896 0.87648 1.21538 1.03395 1.00744 0.91350 1.20449 0.79337 0.85610 0.84445 1.90642 1.40599 1.24776 1.86786 1.45732 1.57199 1.28433 1.04725 1.20977 1.00892 0.95671 0.84632 1.19653 0.86212 0.87740 0.84142 1.90547 1.44941 1.25080 1.85702 1.42126 1.50067 1.23297 1.05868 1.19446 1.33655 1.08739 0.82073 0.86074 1.25075 0.97503 0.98291 0.95063 1.69622 1.44335 1.39111 0.98169 0.86663 0.80830 0.83146 0.78799 1.19383 1.19964 1.19256 1.22558 0.72831 0.88288 0.88400 1.90522 1.39678 1.16661 1.85468 1.20541 1.05526 0.94925 0.95860 1.21464 0.94360 1.00598 0.91657 1.21179 1.01391 0.94476 0.98235 1.21460 0.96274 0.94663 0.98422 1.21196 1.00509 1.00466 0.92981 1.21617 0.95732 0.92940 0.98617 0.88945 0.92282 0.92483 0.87698 0.88489 0.74856 0.89708 0.89698 0.79257 0.91367 0.84887 0.85398 0.85581 0.85257 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.92 37.16 0.33 -1.10 16 2 C -0.12 -1.16 1.81 -91.77 -0.17 -1.32 16 3 H 0.11 0.97 6.27 -51.93 -0.33 0.65 16 4 C -0.13 -1.43 4.68 -27.88 -0.13 -1.56 16 5 C 0.52 7.11 7.55 -10.99 -0.08 7.03 16 6 O -0.55 -8.61 13.97 5.55 0.08 -8.53 16 7 N -0.71 -10.77 5.53 -61.47 -0.34 -11.11 16 8 C 0.11 1.77 6.15 -5.19 -0.03 1.74 16 9 C 0.44 9.47 7.85 -10.99 -0.09 9.38 16 10 O -0.58 -14.52 15.24 5.55 0.08 -14.44 16 11 N -0.58 -13.26 5.09 -10.96 -0.06 -13.31 16 12 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 13 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 14 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 15 N -0.87 -24.84 13.96 55.50 0.77 -24.07 16 16 Si 0.88 18.84 27.74 -169.99 -4.71 14.12 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 20 C 0.40 4.20 6.17 -30.68 -0.19 4.01 16 21 O -0.45 -5.80 16.27 5.58 0.09 -5.71 16 22 C -0.17 -1.53 5.87 -105.07 -0.62 -2.15 16 23 C -0.06 -0.53 9.60 -39.11 -0.38 -0.91 16 24 C -0.13 -0.89 10.03 -39.64 -0.40 -1.29 16 25 C -0.09 -0.53 10.04 -39.46 -0.40 -0.93 16 26 C -0.13 -0.84 10.03 -39.65 -0.40 -1.24 16 27 C -0.07 -0.53 9.37 -39.11 -0.37 -0.90 16 28 H 0.09 1.06 5.95 -51.93 -0.31 0.75 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 1.12 8.02 -51.93 -0.42 0.71 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.41 6.34 7.44 -40.82 -0.30 6.03 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 37 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.13 1.11 7.65 -52.49 -0.40 0.71 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.14 0.86 6.35 -52.49 -0.33 0.53 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -33.09 360.28 -7.07 -40.16 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -5.26 Total: 14.25 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -3.15 Total: 3.20 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.38 Total: -48.49 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: 0.25 Total: -28.68 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.71 Total: 14.12 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.09 -7.07 -40.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000672330883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.493 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds