Wall clock time and date at job start Tue Mar 31 2020 05:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.75416 * 2 1 4 4 C 1.52997 * 109.72114 * 120.63267 * 2 1 3 5 5 N 1.45649 * 110.77354 * 166.39572 * 4 2 1 6 6 C 1.46500 * 117.70324 * 158.10118 * 5 4 2 7 7 C 1.33376 * 124.59095 * 338.08199 * 5 4 2 8 8 O 1.21279 * 118.48894 * 184.34457 * 7 5 4 9 9 C 1.50076 * 123.01039 * 4.16059 * 7 5 4 10 10 N 1.47051 * 109.08400 * 347.58912 * 9 7 5 11 11 C 1.34773 * 121.35255 * 222.68251 * 10 9 7 12 12 O 1.21599 * 119.99760 * 184.87407 * 11 10 9 13 13 C 1.47533 * 120.00528 * 4.60705 * 11 10 9 14 14 C 1.39670 * 120.19109 * 310.39359 * 13 11 10 15 15 C 1.37828 * 119.91500 * 179.78534 * 14 13 11 16 16 C 1.38569 * 120.32586 * 0.46888 * 15 14 13 17 17 C 1.38029 * 120.40270 * 359.78269 * 16 15 14 18 18 C 1.38831 * 120.06755 * 359.97438 * 17 16 15 19 19 O 1.35517 * 120.16133 * 179.97438 * 18 17 16 20 20 C 1.34814 * 116.99882 * 6.03017 * 19 18 17 21 21 H 1.08000 * 119.99860 * 354.83929 * 20 19 18 22 22 C 1.38698 * 120.00218 * 174.83208 * 20 19 18 23 23 N 1.31522 * 119.99967 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00313 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47230 * 89.99952 * 24 22 20 26 26 H 1.48499 * 109.47326 * 210.00284 * 24 22 20 27 27 H 1.48501 * 109.47289 * 330.00223 * 24 22 20 28 28 H 1.09001 * 109.47104 * 180.63987 * 1 2 3 29 29 H 1.09001 * 109.47066 * 300.63334 * 1 2 3 30 30 H 1.08995 * 109.46642 * 60.63250 * 1 2 3 31 31 H 1.08998 * 109.21645 * 286.73180 * 4 2 1 32 32 H 1.09000 * 109.21236 * 46.06180 * 4 2 1 33 33 H 1.09001 * 109.46925 * 89.99640 * 6 5 4 34 34 H 1.08992 * 109.47108 * 210.00212 * 6 5 4 35 35 H 1.09008 * 109.47245 * 330.00350 * 6 5 4 36 36 H 1.08999 * 109.53142 * 227.67371 * 9 7 5 37 37 H 1.09001 * 109.41072 * 107.43904 * 9 7 5 38 38 H 1.08001 * 120.04079 * 0.02562 * 14 13 11 39 39 H 1.08001 * 119.83699 * 180.23019 * 15 14 13 40 40 H 1.07999 * 119.79762 * 179.76395 * 16 15 14 41 41 H 1.07995 * 119.96382 * 179.97438 * 17 16 15 42 42 H 0.96998 * 120.00306 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0258 0.0000 4 6 2.0463 -0.7338 1.2392 5 7 3.4666 -1.0297 1.1101 6 6 4.2270 -1.2685 2.3393 7 6 4.1233 -1.0987 -0.0486 8 8 5.2894 -1.4318 -0.0337 9 6 3.4845 -0.7871 -1.3704 10 7 2.0269 -0.7065 -1.1928 11 6 1.1804 -1.2614 -2.0826 12 8 -0.0192 -1.1047 -1.9599 13 6 1.7093 -2.0541 -3.2089 14 6 2.7334 -1.5417 -4.0086 15 6 3.2263 -2.2889 -5.0567 16 6 2.7041 -3.5435 -5.3279 17 6 1.6883 -4.0606 -4.5494 18 6 1.1829 -3.3242 -3.4865 19 8 0.1853 -3.8298 -2.7213 20 6 -0.1879 -5.1022 -2.9647 21 1 0.2442 -5.6424 -3.7941 22 6 -1.1267 -5.7176 -2.1499 23 7 -1.6532 -5.0596 -1.1401 24 14 -1.6433 -7.4808 -2.4867 25 1 -0.7544 -8.4080 -1.7415 26 1 -3.0471 -7.6784 -2.0446 27 1 -1.5390 -7.7578 -3.9419 28 1 -0.3633 -1.0276 0.0115 29 1 -0.3633 0.5236 0.8843 30 1 -0.3632 0.5040 -0.8956 31 1 1.8884 -0.1087 2.1181 32 1 1.4950 -1.6664 1.3595 33 1 4.2009 -2.3308 2.5820 34 1 5.2604 -0.9542 2.1941 35 1 3.7851 -0.6982 3.1566 36 1 3.7221 -1.5752 -2.0849 37 1 3.8607 0.1674 -1.7385 38 1 3.1412 -0.5629 -3.8036 39 1 4.0208 -1.8931 -5.6719 40 1 3.0941 -4.1201 -6.1536 41 1 1.2864 -5.0389 -4.7674 42 1 -2.3099 -5.4897 -0.5705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782875209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:36 Heat of formation + Delta-G solvation = -33.279761 kcal Electronic energy + Delta-G solvation = -27776.749137 eV Core-core repulsion = 23917.127293 eV Total energy + Delta-G solvation = -3859.621844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.86615 -39.49449 -38.43142 -36.55858 -36.20979 -34.67222 -32.46452 -32.37421 -30.15195 -29.06298 -28.44297 -26.66219 -25.49732 -25.38621 -23.53105 -22.21418 -21.33249 -19.93167 -18.62804 -18.10464 -17.55690 -16.79115 -16.47928 -16.01459 -15.69978 -15.38421 -15.06912 -14.82202 -14.44121 -14.23172 -13.85698 -13.67281 -13.44381 -13.21154 -12.96547 -12.70023 -12.54955 -12.49764 -12.28457 -12.04267 -11.94385 -11.77432 -11.46194 -11.32862 -11.16823 -11.07972 -10.93199 -10.84395 -10.50677 -10.11213 -9.58305 -8.94066 -8.81162 -8.65853 -8.37094 -8.25856 -7.39020 -6.53147 -4.12592 1.73160 2.23125 2.58573 2.83504 3.08383 3.08949 3.13737 3.14785 3.43581 3.88368 4.39085 4.43452 4.68691 4.91573 4.99376 5.02889 5.08335 5.17893 5.28328 5.32402 5.43290 5.44778 5.49127 5.52601 5.67458 5.74238 5.82791 5.90611 5.96273 6.09071 6.19596 6.38254 6.49105 6.50970 6.63873 6.88064 6.93649 6.98659 7.18071 7.23376 7.35575 7.61805 7.64337 7.88285 8.09844 8.75734 8.89698 9.57045 10.62359 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.005157 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.987038 B = 5428.026003 C = 6369.637643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.136 3.864 3 H 0.077 0.923 4 C 0.099 3.901 5 N -0.604 5.604 6 C 0.077 3.923 7 C 0.511 3.489 8 O -0.550 6.550 9 C 0.096 3.904 10 N -0.621 5.621 11 C 0.584 3.416 12 O -0.502 6.502 13 C -0.225 4.225 14 C -0.047 4.047 15 C -0.221 4.221 16 C -0.053 4.053 17 C -0.233 4.233 18 C 0.190 3.810 19 O -0.147 6.147 20 C -0.399 4.399 21 H 0.094 0.906 22 C 0.044 3.956 23 N -0.845 5.845 24 Si 0.942 3.058 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.266 1.266 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.131 0.869 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.133 0.867 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.149 8.708 2.831 12.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.033 3.967 3 H 0.095 0.905 4 C -0.025 4.025 5 N -0.337 5.337 6 C -0.065 4.065 7 C 0.298 3.702 8 O -0.428 6.428 9 C -0.030 4.030 10 N -0.360 5.360 11 C 0.375 3.625 12 O -0.375 6.375 13 C -0.229 4.229 14 C -0.066 4.066 15 C -0.240 4.240 16 C -0.072 4.072 17 C -0.252 4.252 18 C 0.132 3.868 19 O -0.047 6.047 20 C -0.475 4.475 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.477 5.477 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.201 1.201 27 H -0.190 1.190 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.148 0.852 37 H 0.117 0.883 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.150 0.850 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.698 8.652 3.281 12.037 hybrid contribution -0.157 -0.978 -0.137 1.000 sum 7.541 7.674 3.144 11.209 Atomic orbital electron populations 1.22170 0.90720 1.05077 1.01469 1.21522 0.97370 0.94672 0.83179 0.90495 1.22042 0.80045 1.01434 0.98964 1.47156 1.09982 1.69674 1.06842 1.21733 0.97650 1.01521 0.85630 1.20341 0.86784 0.77052 0.85975 1.90720 1.17066 1.47836 1.87135 1.21980 0.80531 1.05005 0.95459 1.48156 1.05386 1.57715 1.24708 1.18131 0.85612 0.77541 0.81202 1.90846 1.14769 1.57987 1.73948 1.18748 1.04932 0.96730 1.02537 1.20794 0.93342 0.98202 0.94266 1.20504 1.05006 0.96692 1.01808 1.20916 0.94359 0.94808 0.97075 1.21155 1.02380 1.02615 0.99056 1.19167 0.86706 0.91084 0.89875 1.84009 1.41128 1.28802 1.50759 1.21421 1.24682 0.86304 1.15060 0.88818 1.25345 0.95823 1.00100 0.94960 1.70061 1.25824 1.36907 1.14904 0.85705 0.78334 0.80241 0.79143 1.19779 1.20106 1.19018 0.89773 0.93734 0.90080 0.89627 0.90545 0.92527 0.90364 0.91256 0.85178 0.88314 0.86572 0.86969 0.87021 0.84978 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 7.58 37.16 0.28 -1.82 16 2 C 0.14 1.86 3.56 -67.51 -0.24 1.62 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 4 C 0.10 1.24 5.92 -4.50 -0.03 1.21 16 5 N -0.60 -8.25 3.20 -182.93 -0.59 -8.84 16 6 C 0.08 0.86 10.19 59.85 0.61 1.47 16 7 C 0.51 8.01 7.57 -11.91 -0.09 7.92 16 8 O -0.55 -9.99 16.25 5.56 0.09 -9.90 16 9 C 0.10 1.40 5.14 -5.19 -0.03 1.37 16 10 N -0.62 -10.21 2.98 -168.03 -0.50 -10.71 16 11 C 0.58 12.12 6.89 -12.47 -0.09 12.04 16 12 O -0.50 -12.00 12.13 -3.25 -0.04 -12.04 16 13 C -0.22 -4.71 5.01 -104.81 -0.52 -5.24 16 14 C -0.05 -0.80 7.49 -39.20 -0.29 -1.09 16 15 C -0.22 -3.56 10.02 -39.61 -0.40 -3.95 16 16 C -0.05 -0.92 10.03 -39.54 -0.40 -1.31 16 17 C -0.23 -4.89 9.16 -39.44 -0.36 -5.25 16 18 C 0.19 4.55 6.63 -38.60 -0.26 4.30 16 19 O -0.15 -4.17 8.82 -7.72 -0.07 -4.24 16 20 C -0.40 -10.98 9.49 30.90 0.29 -10.69 16 21 H 0.09 2.36 5.21 -52.49 -0.27 2.08 16 22 C 0.04 1.20 5.49 -17.51 -0.10 1.11 16 23 N -0.84 -24.48 13.67 55.48 0.76 -23.72 16 24 Si 0.94 20.18 29.55 -169.99 -5.02 15.15 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 28 H 0.08 1.65 6.87 -51.93 -0.36 1.29 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.38 6.71 -51.93 -0.35 1.03 16 31 H 0.09 0.78 7.84 -51.93 -0.41 0.37 16 32 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.91 7.23 -51.93 -0.38 0.53 16 35 H 0.07 0.56 7.81 -51.92 -0.41 0.15 16 36 H 0.13 2.05 5.21 -51.93 -0.27 1.78 16 37 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 38 H 0.12 1.59 6.97 -52.49 -0.37 1.23 16 39 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 42 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -34.01 342.61 -7.00 -41.02 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.19 Total: 6.43 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.61 Total: 1.68 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.33 Total: -43.27 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.02 Total: -26.17 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.01 -7.00 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782875209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.739 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds