Wall clock time and date at job start Tue Mar 31 2020 05:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.75416 * 2 1 4 4 C 1.52997 * 109.72114 * 120.63267 * 2 1 3 5 5 N 1.45649 * 110.77354 * 166.39572 * 4 2 1 6 6 C 1.46500 * 117.70324 * 158.10118 * 5 4 2 7 7 C 1.33376 * 124.59095 * 338.08199 * 5 4 2 8 8 O 1.21279 * 118.48894 * 184.34457 * 7 5 4 9 9 C 1.50076 * 123.01039 * 4.16059 * 7 5 4 10 10 N 1.47051 * 109.08400 * 347.58912 * 9 7 5 11 11 C 1.34773 * 121.35255 * 222.68251 * 10 9 7 12 12 O 1.21599 * 119.99760 * 184.87407 * 11 10 9 13 13 C 1.47533 * 120.00528 * 4.60705 * 11 10 9 14 14 C 1.39670 * 120.19109 * 310.39359 * 13 11 10 15 15 C 1.37828 * 119.91500 * 179.78534 * 14 13 11 16 16 C 1.38569 * 120.32586 * 0.46888 * 15 14 13 17 17 C 1.38029 * 120.40270 * 359.78269 * 16 15 14 18 18 C 1.38831 * 120.06755 * 359.97438 * 17 16 15 19 19 O 1.35517 * 120.16133 * 179.97438 * 18 17 16 20 20 C 1.34814 * 116.99882 * 6.03017 * 19 18 17 21 21 H 1.08000 * 119.99860 * 354.83929 * 20 19 18 22 22 C 1.38698 * 120.00218 * 174.83208 * 20 19 18 23 23 N 1.31522 * 119.99967 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00313 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47230 * 89.99952 * 24 22 20 26 26 H 1.48499 * 109.47326 * 210.00284 * 24 22 20 27 27 H 1.48501 * 109.47289 * 330.00223 * 24 22 20 28 28 H 1.09001 * 109.47104 * 180.63987 * 1 2 3 29 29 H 1.09001 * 109.47066 * 300.63334 * 1 2 3 30 30 H 1.08995 * 109.46642 * 60.63250 * 1 2 3 31 31 H 1.08998 * 109.21645 * 286.73180 * 4 2 1 32 32 H 1.09000 * 109.21236 * 46.06180 * 4 2 1 33 33 H 1.09001 * 109.46925 * 89.99640 * 6 5 4 34 34 H 1.08992 * 109.47108 * 210.00212 * 6 5 4 35 35 H 1.09008 * 109.47245 * 330.00350 * 6 5 4 36 36 H 1.08999 * 109.53142 * 227.67371 * 9 7 5 37 37 H 1.09001 * 109.41072 * 107.43904 * 9 7 5 38 38 H 1.08001 * 120.04079 * 0.02562 * 14 13 11 39 39 H 1.08001 * 119.83699 * 180.23019 * 15 14 13 40 40 H 1.07999 * 119.79762 * 179.76395 * 16 15 14 41 41 H 1.07995 * 119.96382 * 179.97438 * 17 16 15 42 42 H 0.96998 * 120.00306 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0258 0.0000 4 6 2.0463 -0.7338 1.2392 5 7 3.4666 -1.0297 1.1101 6 6 4.2270 -1.2685 2.3393 7 6 4.1233 -1.0987 -0.0486 8 8 5.2894 -1.4318 -0.0337 9 6 3.4845 -0.7871 -1.3704 10 7 2.0269 -0.7065 -1.1928 11 6 1.1804 -1.2614 -2.0826 12 8 -0.0192 -1.1047 -1.9599 13 6 1.7093 -2.0541 -3.2089 14 6 2.7334 -1.5417 -4.0086 15 6 3.2263 -2.2889 -5.0567 16 6 2.7041 -3.5435 -5.3279 17 6 1.6883 -4.0606 -4.5494 18 6 1.1829 -3.3242 -3.4865 19 8 0.1853 -3.8298 -2.7213 20 6 -0.1879 -5.1022 -2.9647 21 1 0.2442 -5.6424 -3.7941 22 6 -1.1267 -5.7176 -2.1499 23 7 -1.6532 -5.0596 -1.1401 24 14 -1.6433 -7.4808 -2.4867 25 1 -0.7544 -8.4080 -1.7415 26 1 -3.0471 -7.6784 -2.0446 27 1 -1.5390 -7.7578 -3.9419 28 1 -0.3633 -1.0276 0.0115 29 1 -0.3633 0.5236 0.8843 30 1 -0.3632 0.5040 -0.8956 31 1 1.8884 -0.1087 2.1181 32 1 1.4950 -1.6664 1.3595 33 1 4.2009 -2.3308 2.5820 34 1 5.2604 -0.9542 2.1941 35 1 3.7851 -0.6982 3.1566 36 1 3.7221 -1.5752 -2.0849 37 1 3.8607 0.1674 -1.7385 38 1 3.1412 -0.5629 -3.8036 39 1 4.0208 -1.8931 -5.6719 40 1 3.0941 -4.1201 -6.1536 41 1 1.2864 -5.0389 -4.7674 42 1 -2.3099 -5.4897 -0.5705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782875209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:35 Heat of formation + Delta-G solvation = -57.379607 kcal Electronic energy + Delta-G solvation = -27777.794185 eV Core-core repulsion = 23917.127293 eV Total energy + Delta-G solvation = -3860.666892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.17538 -40.98921 -39.98737 -38.16794 -37.57307 -35.96670 -34.35271 -33.71405 -31.60605 -30.65425 -29.62143 -27.85073 -27.42462 -26.48900 -24.95197 -23.66963 -22.82431 -21.32003 -20.00796 -19.86568 -18.91247 -18.24595 -17.89516 -17.18605 -17.00827 -16.69633 -16.53015 -16.45796 -15.99450 -15.66134 -15.48178 -15.30035 -14.77983 -14.51364 -14.46868 -14.11140 -13.92152 -13.61574 -13.56376 -13.47444 -13.26043 -13.11300 -12.98462 -12.60490 -12.58683 -12.49756 -12.37531 -12.34163 -12.14833 -11.42428 -11.37594 -10.85066 -10.19963 -9.92917 -9.78390 -9.67209 -9.06975 -8.49415 -6.18880 0.20665 0.67878 1.31355 1.36517 1.41631 1.49158 1.61053 1.78972 2.09323 2.13376 2.79536 3.12807 3.25386 3.37877 3.51311 3.68037 3.97859 4.05850 4.08265 4.19396 4.25258 4.32033 4.36668 4.47093 4.51576 4.54414 4.59910 4.69584 4.75154 4.87483 4.92552 5.03436 5.05325 5.10118 5.17929 5.36133 5.48390 5.56255 5.63682 5.68270 5.93036 6.13296 6.19745 6.23830 6.90770 6.92487 7.23305 7.72958 8.71862 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.005157 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.987038 B = 5428.026003 C = 6369.637643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.132 3.868 3 H 0.121 0.879 4 C 0.103 3.897 5 N -0.604 5.604 6 C 0.074 3.926 7 C 0.504 3.496 8 O -0.579 6.579 9 C 0.096 3.904 10 N -0.615 5.615 11 C 0.576 3.424 12 O -0.548 6.548 13 C -0.238 4.238 14 C -0.042 4.042 15 C -0.193 4.193 16 C -0.047 4.047 17 C -0.251 4.251 18 C 0.147 3.853 19 O -0.207 6.207 20 C -0.421 4.421 21 H 0.105 0.895 22 C -0.019 4.019 23 N -0.909 5.909 24 Si 1.018 2.982 25 H -0.263 1.263 26 H -0.272 1.272 27 H -0.250 1.250 28 H 0.029 0.971 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.134 0.866 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.143 0.857 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.153 0.847 41 H 0.123 0.877 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.177 10.477 1.839 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.030 3.970 3 H 0.139 0.861 4 C -0.021 4.021 5 N -0.335 5.335 6 C -0.068 4.068 7 C 0.292 3.708 8 O -0.460 6.460 9 C -0.029 4.029 10 N -0.352 5.352 11 C 0.367 3.633 12 O -0.426 6.426 13 C -0.243 4.243 14 C -0.060 4.060 15 C -0.211 4.211 16 C -0.065 4.065 17 C -0.271 4.271 18 C 0.094 3.906 19 O -0.111 6.111 20 C -0.497 4.497 21 H 0.122 0.878 22 C -0.218 4.218 23 N -0.545 5.545 24 Si 0.837 3.163 25 H -0.188 1.188 26 H -0.196 1.196 27 H -0.174 1.174 28 H 0.048 0.952 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.136 0.864 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.181 0.819 40 H 0.171 0.829 41 H 0.141 0.859 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.800 10.460 2.278 15.206 hybrid contribution -0.796 -1.279 0.042 1.507 sum 10.004 9.180 2.320 13.775 Atomic orbital electron populations 1.21914 0.92322 1.01766 1.02261 1.21819 0.96112 0.96647 0.82430 0.86134 1.22075 0.79022 1.00760 1.00196 1.47277 1.10350 1.68573 1.07266 1.21905 0.97580 1.01666 0.85615 1.20518 0.86557 0.76887 0.86793 1.90708 1.18283 1.49431 1.87586 1.22156 0.78921 1.06790 0.95015 1.48136 1.05965 1.56610 1.24494 1.18297 0.85444 0.77596 0.81998 1.90841 1.16779 1.59767 1.75193 1.19223 1.05708 0.95835 1.03503 1.21303 0.91580 0.99824 0.93289 1.21183 1.04203 0.95324 1.00431 1.21410 0.92436 0.95652 0.96957 1.21298 1.03927 1.02506 0.99327 1.19892 0.87139 0.92838 0.90756 1.83997 1.44293 1.29432 1.53399 1.21911 1.25207 0.86901 1.15676 0.87815 1.26634 0.95658 1.04965 0.94554 1.70232 1.27879 1.39322 1.17103 0.84603 0.77927 0.74022 0.79755 1.18793 1.19635 1.17355 0.95224 0.89872 0.92118 0.84821 0.93701 0.93480 0.90742 0.87438 0.86406 0.83970 0.82496 0.81878 0.82942 0.85906 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 7.58 71.98 0.55 -3.39 16 2 C 0.13 3.41 3.56 44.84 0.16 3.57 16 3 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 4 C 0.10 2.40 5.92 86.54 0.51 2.91 16 5 N -0.60 -15.33 3.20 -851.84 -2.73 -18.05 16 6 C 0.07 1.49 10.19 127.77 1.30 2.79 16 7 C 0.50 14.91 7.57 87.68 0.66 15.57 16 8 O -0.58 -20.22 16.25 -3.03 -0.05 -20.27 16 9 C 0.10 2.56 5.14 85.33 0.44 3.00 16 10 N -0.62 -19.80 2.98 -803.77 -2.40 -22.20 16 11 C 0.58 24.75 6.89 86.70 0.60 25.35 16 12 O -0.55 -28.24 12.13 4.13 0.05 -28.19 16 13 C -0.24 -10.12 5.01 -19.99 -0.10 -10.22 16 14 C -0.04 -1.28 7.49 22.52 0.17 -1.11 16 15 C -0.19 -5.26 10.02 22.25 0.22 -5.04 16 16 C -0.05 -1.46 10.03 22.30 0.22 -1.24 16 17 C -0.25 -10.69 9.16 22.36 0.20 -10.49 16 18 C 0.15 7.43 6.63 22.91 0.15 7.59 16 19 O -0.21 -12.77 8.82 -11.87 -0.10 -12.88 16 20 C -0.42 -24.93 9.49 67.93 0.64 -24.29 16 21 H 0.10 5.57 5.21 -2.91 -0.02 5.56 16 22 C -0.02 -1.11 5.49 84.85 0.47 -0.65 16 23 N -0.91 -57.21 13.67 21.62 0.30 -56.92 16 24 Si 1.02 43.54 29.55 68.60 2.03 45.57 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 28 H 0.03 1.25 6.87 -2.39 -0.02 1.23 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 2.15 6.71 -2.39 -0.02 2.13 16 31 H 0.13 1.89 7.84 -2.39 -0.02 1.87 16 32 H 0.04 1.36 8.06 -2.39 -0.02 1.34 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.58 7.23 -2.39 -0.02 1.57 16 35 H 0.11 1.33 7.81 -2.38 -0.02 1.31 16 36 H 0.12 3.47 5.21 -2.39 -0.01 3.46 16 37 H 0.14 2.58 8.10 -2.39 -0.02 2.56 16 38 H 0.16 3.51 6.97 -2.91 -0.02 3.49 16 39 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 41 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 42 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -86.29 342.61 4.35 -81.94 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 1.06 Total: 26.63 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 6.20 Total: 4.36 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -4.83 Total: -97.18 kcal Atomic # 8 Polarization: -61.23 SS G_CDS: -0.10 Total: -61.33 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -86.29 4.35 -81.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782875209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.562 kcal (2) G-P(sol) polarization free energy of solvation -86.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds