Wall clock time and date at job start Tue Mar 31 2020 04:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35685 * 116.99764 * 2 1 4 4 C 1.38602 * 120.16093 * 359.97438 * 3 2 1 5 5 C 1.38133 * 120.10800 * 179.97438 * 4 3 2 6 6 C 1.38568 * 120.43554 * 0.02562 * 5 4 3 7 7 C 1.37760 * 120.31983 * 359.97438 * 6 5 4 8 8 C 1.39924 * 119.87784 * 0.27698 * 7 6 5 9 9 C 1.46953 * 120.20907 * 179.72751 * 8 7 6 10 10 C 1.50698 * 119.99850 * 254.99700 * 9 8 7 11 11 C 1.35003 * 119.99895 * 74.99856 * 9 8 7 12 12 C 1.46242 * 120.00085 * 359.97438 * 11 9 8 13 13 O 1.21729 * 119.99893 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00008 * 180.02562 * 12 11 9 15 15 C 1.46495 * 120.00047 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47025 * 180.02562 * 15 14 12 17 17 O 1.21287 * 120.00353 * 0.02562 * 16 15 14 18 18 N 1.34786 * 119.99816 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99835 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00180 * 0.02562 * 19 18 16 21 21 C 1.38943 * 120.00304 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00460 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99684 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46897 * 90.00088 * 23 21 19 25 25 H 1.48496 * 109.47199 * 209.99390 * 23 21 19 26 26 H 1.48496 * 109.47297 * 329.99765 * 23 21 19 27 27 H 1.09007 * 109.47301 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47501 * 299.99925 * 1 2 3 29 29 H 1.09002 * 109.47290 * 60.00011 * 1 2 3 30 30 H 1.07991 * 119.94694 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.78169 * 180.02562 * 5 4 3 32 32 H 1.08004 * 119.84141 * 179.97438 * 6 5 4 33 33 H 1.08002 * 120.05676 * 179.97438 * 7 6 5 34 34 H 1.08995 * 109.47019 * 90.00287 * 10 9 8 35 35 H 1.09005 * 109.46661 * 210.00169 * 10 9 8 36 36 H 1.08998 * 109.46983 * 329.99528 * 10 9 8 37 37 H 1.07998 * 119.99464 * 179.97438 * 11 9 8 38 38 H 0.96998 * 119.99853 * 0.02562 * 14 12 11 39 39 H 1.09007 * 109.47225 * 300.00210 * 15 14 12 40 40 H 1.08996 * 109.47048 * 60.00143 * 15 14 12 41 41 H 0.96995 * 119.99575 * 0.02562 * 18 16 15 42 42 H 0.97005 * 120.00153 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2933 2.3735 -0.0005 5 6 1.9215 3.6037 0.0000 6 6 3.3048 3.6855 0.0005 7 6 4.0692 2.5395 0.0011 8 6 3.4467 1.2864 -0.0048 9 6 4.2551 0.0592 -0.0103 10 6 4.3876 -0.7501 -1.2746 11 6 4.8789 -0.3432 1.1173 12 6 4.7507 0.4424 2.3441 13 8 4.0818 1.4595 2.3484 14 7 5.3740 0.0410 3.4696 15 6 5.2460 0.8283 4.6984 16 6 6.0329 0.1690 5.8016 17 8 6.6413 -0.8572 5.5829 18 7 6.0607 0.7199 7.0315 19 6 6.7762 0.1198 8.0352 20 1 7.3179 -0.7940 7.8405 21 6 6.8054 0.6879 9.3029 22 7 7.4916 0.1130 10.2650 23 14 5.8691 2.2689 9.6397 24 1 4.4918 1.9423 10.0890 25 1 6.5656 3.0404 10.7002 26 1 5.8053 3.0805 8.3979 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2148 2.3189 -0.0014 31 1 1.3307 4.5077 0.0000 32 1 3.7859 4.6524 0.0005 33 1 5.1470 2.6082 0.0011 34 1 5.2486 -0.3980 -1.8428 35 1 4.5252 -1.8011 -1.0204 36 1 3.4850 -0.6366 -1.8749 37 1 5.4727 -1.2453 1.1133 38 1 5.9078 -0.7688 3.4659 39 1 5.6319 1.8334 4.5278 40 1 4.1960 0.8861 4.9851 41 1 5.5739 1.5404 7.2064 42 1 7.5117 0.5095 11.1501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804820212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:47 Heat of formation + Delta-G solvation = -59.274480 kcal Electronic energy + Delta-G solvation = -25895.993354 eV Core-core repulsion = 22035.244294 eV Total energy + Delta-G solvation = -3860.749060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.41490 -39.42067 -38.30661 -37.34115 -35.13392 -34.37488 -33.63688 -31.78884 -30.42668 -30.00015 -28.89975 -27.45486 -26.98658 -24.36451 -23.21170 -22.05879 -20.88341 -19.70870 -19.23475 -18.57394 -17.90137 -17.18950 -16.18086 -15.97614 -15.84236 -15.34472 -15.21201 -15.15553 -14.75240 -14.41204 -14.04032 -13.89532 -13.77098 -13.61577 -13.22081 -13.14949 -12.63910 -12.49243 -12.45858 -12.29904 -12.15112 -12.04640 -12.02284 -11.57108 -11.22982 -11.20757 -10.87058 -10.63463 -10.05400 -9.85935 -9.68463 -9.24161 -8.74767 -8.72413 -8.57647 -8.28996 -8.03566 -6.39614 -3.92021 1.08147 1.49146 1.49579 3.00400 3.05031 3.12782 3.15692 3.46223 3.50046 3.61283 3.76019 4.04582 4.49145 4.58719 4.74527 4.87163 4.89203 4.95690 5.00954 5.15461 5.19373 5.28496 5.29349 5.32819 5.40266 5.46347 5.62604 5.67100 5.75180 5.82348 5.86726 5.88791 6.12945 6.24629 6.37217 6.41332 6.56299 6.68797 6.75348 7.33260 7.45929 7.88856 8.02345 8.44805 8.55496 8.83148 9.31402 9.65565 10.72676 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.002809 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.868929 B = 9964.164905 C =10534.896148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.138 3.862 4 C -0.209 4.209 5 C -0.082 4.082 6 C -0.154 4.154 7 C -0.036 4.036 8 C -0.064 4.064 9 C 0.009 3.991 10 C -0.117 4.117 11 C -0.206 4.206 12 C 0.539 3.461 13 O -0.538 6.538 14 N -0.705 5.705 15 C 0.109 3.891 16 C 0.439 3.561 17 O -0.578 6.578 18 N -0.578 5.578 19 C -0.310 4.310 20 H 0.121 0.879 21 C 0.045 3.955 22 N -0.875 5.875 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.411 0.589 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.374 0.626 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.554 4.384 -24.074 27.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.093 3.907 4 C -0.228 4.228 5 C -0.100 4.100 6 C -0.172 4.172 7 C -0.054 4.054 8 C -0.065 4.065 9 C 0.007 3.993 10 C -0.173 4.173 11 C -0.227 4.227 12 C 0.328 3.672 13 O -0.417 6.417 14 N -0.359 5.359 15 C -0.019 4.019 16 C 0.225 3.775 17 O -0.463 6.463 18 N -0.215 5.215 19 C -0.438 4.438 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.514 5.514 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.150 0.850 38 H 0.249 0.751 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.207 0.793 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.447 4.209 -23.923 27.294 hybrid contribution -0.658 1.015 0.813 1.457 sum -13.106 5.224 -23.110 27.076 Atomic orbital electron populations 1.23026 0.78705 1.03742 1.01182 1.86017 1.21019 1.26998 1.88647 1.18908 0.90985 0.84138 0.96656 1.21011 0.99503 0.92375 1.09927 1.20880 0.94665 0.96642 0.97816 1.20833 0.93774 0.98145 1.04464 1.20831 0.99231 0.90408 0.94967 1.17940 0.89383 0.93263 1.05900 1.20862 0.91366 0.92344 0.94692 1.20897 1.02793 0.99189 0.94441 1.22825 1.05053 1.02196 0.92578 1.18307 0.79716 0.85442 0.83778 1.90865 1.40364 1.25419 1.85076 1.45627 1.51954 1.29257 1.09093 1.20914 1.00855 0.95380 0.84734 1.19688 0.86634 0.87437 0.83761 1.90535 1.48378 1.25537 1.81820 1.42130 1.45705 1.24235 1.09465 1.19444 1.26679 1.09977 0.87711 0.86093 1.25057 0.97204 0.98267 0.95369 1.69618 1.39697 1.39558 1.02567 0.86675 0.80645 0.83168 0.79036 1.19412 1.19979 1.19241 0.88398 0.92729 0.92875 0.85886 0.86319 0.86221 0.86073 0.90374 0.90784 0.90987 0.85005 0.75133 0.89877 0.89941 0.79274 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.79 9.95 -18.76 -0.19 -3.97 16 3 C 0.14 1.80 6.70 -38.64 -0.26 1.54 16 4 C -0.21 -2.41 9.03 -39.49 -0.36 -2.76 16 5 C -0.08 -0.91 10.03 -39.50 -0.40 -1.30 16 6 C -0.15 -1.80 10.02 -39.63 -0.40 -2.19 16 7 C -0.04 -0.46 7.95 -39.13 -0.31 -0.77 16 8 C -0.06 -0.85 3.35 -104.93 -0.35 -1.20 16 9 C 0.01 0.11 5.01 -102.24 -0.51 -0.40 16 10 C -0.12 -0.99 10.04 36.00 0.36 -0.63 16 11 C -0.21 -2.64 9.69 -37.52 -0.36 -3.00 16 12 C 0.54 8.65 7.68 -13.05 -0.10 8.55 16 13 O -0.54 -9.73 12.82 5.16 0.07 -9.67 16 14 N -0.71 -11.81 5.52 -62.94 -0.35 -12.16 16 15 C 0.11 1.97 6.15 -5.20 -0.03 1.93 16 16 C 0.44 9.88 7.85 -10.98 -0.09 9.79 16 17 O -0.58 -14.88 15.24 5.55 0.08 -14.80 16 18 N -0.58 -13.69 5.09 -10.96 -0.06 -13.74 16 19 C -0.31 -8.64 10.16 -14.94 -0.15 -8.79 16 20 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 21 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 22 N -0.88 -25.22 13.96 55.50 0.77 -24.44 16 23 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 33 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 36 H 0.07 0.61 8.11 -51.93 -0.42 0.18 16 37 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.41 6.79 7.42 -40.82 -0.30 6.48 16 39 H 0.08 1.41 8.14 -51.92 -0.42 0.99 16 40 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 42 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -34.16 361.51 -6.44 -40.60 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -5.44 Total: 15.12 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.06 Total: 3.09 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.37 Total: -50.34 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.04 Total: -28.44 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.16 -6.44 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.676 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds