Wall clock time and date at job start Tue Mar 31 2020 04:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 H 1.09000 * 109.73176 * 305.40540 * 3 2 1 5 5 C 1.53175 * 109.60397 * 185.00064 * 3 2 1 6 6 N 1.46470 * 109.90185 * 177.60460 * 5 3 2 7 7 C 1.46901 * 111.00373 * 196.99591 * 6 5 3 8 8 C 1.50696 * 109.47416 * 300.19801 * 7 6 5 9 9 O 1.21284 * 120.00119 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00254 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00007 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47115 * 180.02562 * 11 10 8 13 13 H 1.08006 * 119.99716 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00161 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00335 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00092 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47229 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46919 * 119.99684 * 16 14 12 19 19 H 1.48501 * 109.47277 * 239.99761 * 16 14 12 20 20 C 1.46474 * 112.46113 * 71.96630 * 6 5 3 21 21 C 1.53179 * 109.82776 * 288.08051 * 20 6 5 22 22 H 1.08997 * 109.60556 * 182.35124 * 21 20 6 23 23 C 1.53003 * 109.60414 * 302.83465 * 21 20 6 24 24 S 1.81644 * 108.76766 * 62.67248 * 21 20 6 25 25 O 1.42098 * 108.71291 * 193.38219 * 24 21 20 26 26 O 1.42110 * 108.84534 * 61.91980 * 24 21 20 27 27 H 1.08996 * 109.46756 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46886 * 299.99893 * 1 2 3 29 29 H 1.09000 * 109.46794 * 59.99840 * 1 2 3 30 30 H 1.09001 * 109.47123 * 239.99620 * 2 1 3 31 31 H 1.09001 * 109.47158 * 119.99760 * 2 1 3 32 32 H 1.09004 * 109.40068 * 57.47072 * 5 3 2 33 33 H 1.09008 * 109.40131 * 297.73647 * 5 3 2 34 34 H 1.09005 * 109.46457 * 60.19046 * 7 6 5 35 35 H 1.08998 * 109.47780 * 180.19001 * 7 6 5 36 36 H 0.96999 * 120.00112 * 359.97438 * 10 8 7 37 37 H 1.09005 * 109.46954 * 299.99211 * 11 10 8 38 38 H 1.09000 * 109.47365 * 59.99709 * 11 10 8 39 39 H 0.96990 * 120.00572 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.40186 * 48.16867 * 20 6 5 41 41 H 1.09003 * 109.40240 * 167.99448 * 20 6 5 42 42 H 1.09005 * 109.46977 * 60.00169 * 23 21 20 43 43 H 1.08992 * 109.47549 * 179.97438 * 23 21 20 44 44 H 1.09001 * 109.47092 * 300.00197 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9876 -0.8363 5 6 3.5666 1.4478 -0.1258 6 7 4.0573 2.8267 -0.1838 7 6 5.4318 2.8751 -0.6999 8 6 6.3355 2.0741 0.2016 9 8 5.8795 1.5180 1.1782 10 7 7.6504 1.9757 -0.0773 11 6 8.5289 1.1974 0.7995 12 6 9.9390 1.2471 0.2700 13 1 10.1586 1.8024 -0.6300 14 6 10.9484 0.5827 0.9337 15 7 10.6809 -0.0940 2.0292 16 14 12.6961 0.6436 0.2769 17 1 12.7320 1.4657 -0.9592 18 1 13.5881 1.2481 1.2988 19 1 13.1577 -0.7340 -0.0305 20 6 3.9570 3.5112 1.1073 21 6 2.4893 3.8185 1.4199 22 1 2.4223 4.3644 2.3608 23 6 1.8892 4.6591 0.2911 24 16 1.5817 2.2515 1.5624 25 8 0.1881 2.5283 1.5405 26 8 2.1258 1.5022 2.6403 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8568 0.9217 -1.0352 33 1 4.0028 0.9443 0.7371 34 1 5.4572 2.4554 -1.7056 35 1 5.7727 3.9100 -0.7294 36 1 8.0150 2.4201 -0.8586 37 1 8.5038 1.6179 1.8049 38 1 8.1879 0.1626 0.8297 39 1 11.3910 -0.5611 2.4963 40 1 4.3675 2.8718 1.8889 41 1 4.5216 4.4428 1.0680 42 1 1.9517 4.1063 -0.6463 43 1 0.8449 4.8761 0.5154 44 1 2.4433 5.5933 0.1997 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805772949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:39 Heat of formation + Delta-G solvation = -106.439666 kcal Electronic energy + Delta-G solvation = -26139.469487 eV Core-core repulsion = 22412.119143 eV Total energy + Delta-G solvation = -3727.350345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.01462 -37.66945 -37.02258 -36.15426 -35.27086 -34.33097 -33.24423 -32.43776 -29.91382 -28.22029 -26.84372 -25.25468 -23.62523 -22.55394 -22.09758 -21.13682 -19.86747 -18.63629 -17.52628 -17.01875 -16.81959 -16.10403 -15.80526 -15.55231 -15.41045 -15.09180 -14.67178 -14.57607 -14.11772 -13.98122 -13.69591 -13.17207 -13.03824 -12.91549 -12.66467 -12.50032 -12.25751 -12.15720 -12.05814 -12.01968 -11.92235 -11.62266 -11.39492 -11.34455 -11.22698 -11.16583 -11.01211 -10.91824 -10.56233 -10.40095 -9.94025 -9.91160 -9.45792 -8.81990 -8.19762 -8.01301 -6.23321 -4.31101 -0.02997 2.58979 3.12121 3.18646 3.25891 3.28535 3.41489 3.54893 3.92769 4.04103 4.25662 4.29807 4.44117 4.45385 4.75964 4.82848 4.89890 5.05563 5.12888 5.15015 5.20154 5.33186 5.37461 5.45431 5.47412 5.49488 5.59900 5.64952 5.74396 5.82029 5.85010 5.93770 6.01312 6.06099 6.56625 6.74742 7.19842 7.29550 7.41886 7.56590 7.88871 8.47088 8.66996 8.93660 9.35825 10.86695 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.003028 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.236346 B = 9246.149991 C = 9541.341564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.108 4.108 3 C -0.550 4.550 4 H 0.142 0.858 5 C 0.052 3.948 6 N -0.528 5.528 7 C 0.038 3.962 8 C 0.461 3.539 9 O -0.553 6.553 10 N -0.707 5.707 11 C 0.248 3.752 12 C -0.545 4.545 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.056 3.944 21 C -0.560 4.560 22 H 0.137 0.863 23 C -0.129 4.129 24 S 2.407 3.593 25 O -0.943 6.943 26 O -0.931 6.931 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.392 0.608 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.798 7.622 -7.931 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.147 4.147 3 C -0.661 4.661 4 H 0.160 0.840 5 C -0.077 4.077 6 N -0.251 5.251 7 C -0.093 4.093 8 C 0.244 3.756 9 O -0.433 6.433 10 N -0.355 5.355 11 C 0.127 3.873 12 C -0.584 4.584 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.521 5.521 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.073 4.073 21 C -0.670 4.670 22 H 0.155 0.845 23 C -0.187 4.187 24 S 2.589 3.411 25 O -0.940 6.940 26 O -0.928 6.928 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.224 0.776 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.864 7.047 -6.692 21.220 hybrid contribution 2.297 0.158 -0.708 2.409 sum -16.567 7.205 -7.399 19.523 Atomic orbital electron populations 1.22132 0.94679 1.03159 1.03536 1.21326 0.96317 0.92035 1.05058 1.30037 1.05363 1.08717 1.21982 0.84039 1.22159 0.89289 0.90003 1.06204 1.61596 1.20148 1.16496 1.26818 1.22287 0.86183 1.01928 0.98923 1.21719 0.84145 0.82702 0.87008 1.90640 1.74827 1.48405 1.29446 1.46584 1.07765 1.51614 1.29512 1.19135 0.87494 0.91044 0.89636 1.21243 0.92291 1.33428 1.11397 0.91853 1.24961 0.99559 0.94765 0.94735 1.69976 1.33385 1.31727 1.17034 0.86361 0.83702 0.77957 0.78878 1.19627 1.20771 1.20756 1.22018 0.91934 1.01232 0.92136 1.30012 1.08767 1.20184 1.08076 0.84487 1.21521 1.00427 1.00465 0.96297 1.08632 0.76026 0.78247 0.78168 1.93542 1.28769 1.84684 1.87042 1.93617 1.80363 1.68868 1.49930 0.91327 0.91448 0.91617 0.89346 0.90021 0.88879 0.88697 0.87484 0.87580 0.77573 0.95492 0.95476 0.92420 0.89654 0.88766 0.90225 0.91394 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.61 37.16 0.36 -1.34 16 2 C -0.11 -1.11 5.39 -26.73 -0.14 -1.25 16 3 C -0.55 -5.82 2.26 -26.64 -0.06 -5.88 16 4 H 0.14 1.14 7.36 -51.93 -0.38 0.76 16 5 C 0.05 0.64 3.97 -3.97 -0.02 0.62 16 6 N -0.53 -5.98 3.75 -236.56 -0.89 -6.87 16 7 C 0.04 0.43 5.74 -4.98 -0.03 0.40 16 8 C 0.46 7.94 7.26 -10.99 -0.08 7.86 16 9 O -0.55 -11.70 11.97 5.55 0.07 -11.63 16 10 N -0.71 -13.44 5.55 -61.47 -0.34 -13.78 16 11 C 0.25 6.27 5.43 -5.19 -0.03 6.24 16 12 C -0.55 -14.28 9.28 -34.44 -0.32 -14.59 16 13 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.88 -25.60 13.29 55.43 0.74 -24.86 16 16 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.06 0.67 4.32 -3.96 -0.02 0.66 16 21 C -0.56 -5.86 3.40 -26.64 -0.09 -5.95 16 22 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 23 C -0.13 -1.07 8.79 37.16 0.33 -0.74 16 24 S 2.41 30.77 3.85 -107.50 -0.41 30.36 16 25 O -0.94 -13.21 15.72 -57.81 -0.91 -14.12 16 26 O -0.93 -15.81 17.93 -57.81 -1.04 -16.85 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.75 5.85 -51.93 -0.30 0.45 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.92 8.00 -51.93 -0.42 0.51 16 32 H 0.09 1.02 7.93 -51.93 -0.41 0.61 16 33 H 0.10 1.51 5.76 -51.92 -0.30 1.21 16 34 H 0.11 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.11 0.97 7.94 -51.93 -0.41 0.56 16 36 H 0.39 6.24 8.32 -40.82 -0.34 5.90 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.09 1.33 6.17 -51.93 -0.32 1.01 16 41 H 0.09 0.99 7.83 -51.93 -0.41 0.59 16 42 H 0.08 0.61 6.45 -51.93 -0.33 0.27 16 43 H 0.07 0.53 7.95 -51.93 -0.41 0.12 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -34.41 354.36 -9.62 -44.03 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.95 Total: 5.38 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -0.20 Total: -12.34 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.49 Total: -45.52 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -1.88 Total: -42.60 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 30.77 SS G_CDS: -0.41 Total: 30.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.41 -9.62 -44.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805772949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.410 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds