Wall clock time and date at job start Tue Mar 31 2020 05:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.34120 * 2 1 4 4 C 1.53744 * 110.41248 * 237.95810 * 2 1 3 5 5 C 1.51222 * 104.58225 * 241.39246 * 4 2 1 6 6 C 1.38179 * 130.97073 * 179.75774 * 5 4 2 7 7 C 1.38223 * 120.15073 * 180.02562 * 6 5 4 8 8 C 1.38299 * 119.82694 * 359.97342 * 7 6 5 9 9 C 1.37838 * 120.22286 * 0.02562 * 8 7 6 10 10 C 1.38554 * 108.55513 * 359.75599 * 5 4 2 11 11 N 1.39830 * 111.62452 * 0.02562 * 10 5 4 12 12 C 1.34778 * 124.98493 * 180.02562 * 11 10 5 13 13 O 1.21283 * 120.00646 * 180.02562 * 12 11 10 14 14 C 1.50702 * 119.99382 * 0.02562 * 12 11 10 15 15 N 1.46511 * 109.46843 * 180.02562 * 14 12 11 16 16 C 1.36926 * 120.00174 * 89.99772 * 15 14 12 17 17 H 1.08008 * 119.99953 * 36.58044 * 16 15 14 18 18 C 1.38810 * 120.00345 * 216.30357 * 16 15 14 19 19 N 1.31619 * 120.00222 * 214.16837 * 18 16 15 20 20 Si 1.86802 * 119.99728 * 34.16887 * 18 16 15 21 21 H 1.48504 * 109.47005 * 93.52671 * 20 18 16 22 22 H 1.48501 * 109.46939 * 213.52819 * 20 18 16 23 23 H 1.48494 * 109.47014 * 333.52835 * 20 18 16 24 24 C 1.46501 * 119.99655 * 269.99825 * 15 14 12 25 25 C 1.50696 * 109.47085 * 273.52976 * 24 15 14 26 26 O 1.20820 * 120.00157 * 6.33510 * 25 24 15 27 27 O 1.34232 * 119.99657 * 186.33579 * 25 24 15 28 28 H 1.09002 * 109.47196 * 297.88826 * 1 2 3 29 29 H 1.09002 * 109.47218 * 57.88529 * 1 2 3 30 30 H 1.08998 * 109.47667 * 177.88369 * 1 2 3 31 31 H 1.08998 * 110.61898 * 122.51443 * 4 2 1 32 32 H 1.09000 * 110.30815 * 0.11698 * 4 2 1 33 33 H 1.08003 * 119.92859 * 359.97438 * 6 5 4 34 34 H 1.08001 * 120.08851 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.88921 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.86130 * 180.02562 * 9 8 7 37 37 H 1.08996 * 109.47361 * 60.00088 * 14 12 11 38 38 H 1.08996 * 109.47276 * 300.00049 * 14 12 11 39 39 H 0.97000 * 119.99827 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.46860 * 33.53177 * 24 15 14 41 41 H 1.08994 * 109.46960 * 153.52945 * 24 15 14 42 42 H 0.96700 * 116.99918 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0662 -0.7645 -1.2214 5 6 2.8557 -1.9132 -0.6350 6 6 3.5594 -2.9338 -1.2454 7 6 4.2104 -3.8828 -0.4798 8 6 4.1565 -3.8084 0.9001 9 6 3.4558 -2.7921 1.5133 10 6 2.7956 -1.8297 0.7467 11 7 2.0379 -0.7311 1.1640 12 6 1.8052 -0.3960 2.4486 13 8 1.1324 0.5790 2.7087 14 6 2.3811 -1.2329 3.5617 15 7 1.9871 -0.6651 4.8535 16 6 0.8271 -1.0733 5.4557 17 1 0.5143 -2.1045 5.3820 18 6 0.0560 -0.1632 6.1656 19 7 -0.6039 -0.5531 7.2356 20 14 -0.0452 1.6150 5.6022 21 1 -1.2291 1.7890 4.7229 22 1 -0.1729 2.5027 6.7859 23 1 1.1860 1.9667 4.8502 24 6 2.8344 0.3395 5.5010 25 6 3.8908 -0.3501 6.3252 26 8 4.0048 -1.5520 6.2779 27 8 4.7050 0.3709 7.1119 28 1 -0.3634 0.4807 0.9083 29 1 -0.3634 0.5463 -0.8704 30 1 -0.3634 -1.0269 -0.0379 31 1 2.7140 -0.1246 -1.8206 32 1 1.2401 -1.1399 -1.8253 33 1 3.6002 -2.9907 -2.3232 34 1 4.7598 -4.6803 -0.9579 35 1 4.6645 -4.5496 1.4993 36 1 3.4179 -2.7393 2.5914 37 1 3.4683 -1.2415 3.4846 38 1 2.0031 -2.2522 3.4828 39 1 -1.1424 0.0830 7.7318 40 1 3.3124 0.9566 4.7402 41 1 2.2225 0.9687 6.1474 42 1 5.3668 -0.1158 7.6221 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828515716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:33 Heat of formation + Delta-G solvation = -46.482623 kcal Electronic energy + Delta-G solvation = -27604.507170 eV Core-core repulsion = 23744.312807 eV Total energy + Delta-G solvation = -3860.194363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.10965 -39.42086 -38.42474 -36.58577 -35.64202 -34.88488 -33.09766 -31.76458 -30.85408 -29.53642 -28.72751 -26.80100 -26.42552 -23.58021 -22.32132 -21.87994 -21.31226 -20.45344 -19.39840 -17.48238 -17.19059 -16.84822 -16.46184 -15.97811 -15.86073 -15.39644 -15.19799 -14.67613 -14.51542 -14.26525 -14.04317 -13.66488 -13.43272 -13.06012 -12.93258 -12.79529 -12.46071 -12.38200 -12.32388 -12.20106 -11.85613 -11.50911 -11.34697 -11.09966 -10.96268 -10.80226 -10.76312 -10.52868 -10.44979 -10.12726 -9.95707 -9.79343 -9.13049 -8.79835 -8.56905 -7.63631 -7.18399 -6.20282 -3.54583 1.34169 1.38488 2.93931 3.03716 3.10959 3.40856 3.54506 3.69180 3.77847 3.84047 4.39251 4.48910 4.49609 4.76861 4.91213 4.95019 5.01211 5.10894 5.21865 5.34855 5.42221 5.46656 5.52321 5.59955 5.69908 5.78625 5.88264 5.88996 5.96265 6.01585 6.02884 6.12983 6.25088 6.32397 6.33598 6.44720 6.54528 6.64461 6.99248 7.16912 7.65750 7.79260 8.15397 8.52762 8.62112 8.79577 9.51690 9.82473 10.92482 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.005220 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.917494 B = 5362.280192 C = 6610.316558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 H 0.084 0.916 4 C -0.081 4.081 5 C -0.147 4.147 6 C -0.075 4.075 7 C -0.155 4.155 8 C -0.083 4.083 9 C -0.165 4.165 10 C 0.164 3.836 11 N -0.559 5.559 12 C 0.491 3.509 13 O -0.490 6.490 14 C 0.131 3.869 15 N -0.546 5.546 16 C -0.291 4.291 17 H 0.082 0.918 18 C 0.053 3.947 19 N -0.867 5.867 20 Si 0.865 3.135 21 H -0.287 1.287 22 H -0.302 1.302 23 H -0.250 1.250 24 C 0.158 3.842 25 C 0.445 3.555 26 O -0.508 6.508 27 O -0.533 6.533 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.267 0.733 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.018 -1.734 -15.885 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 H 0.102 0.898 4 C -0.118 4.118 5 C -0.150 4.150 6 C -0.094 4.094 7 C -0.174 4.174 8 C -0.102 4.102 9 C -0.186 4.186 10 C 0.067 3.933 11 N -0.285 5.285 12 C 0.279 3.721 13 O -0.361 6.361 14 C 0.001 3.999 15 N -0.263 5.263 16 C -0.418 4.418 17 H 0.100 0.900 18 C -0.151 4.151 19 N -0.503 5.503 20 Si 0.692 3.308 21 H -0.214 1.214 22 H -0.229 1.229 23 H -0.174 1.174 24 C 0.028 3.972 25 C 0.284 3.716 26 O -0.394 6.394 27 O -0.344 6.344 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.159 0.841 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.116 0.884 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 9.114 -1.152 -15.620 18.121 hybrid contribution 0.108 0.617 0.057 0.629 sum 9.222 -0.535 -15.563 18.098 Atomic orbital electron populations 1.22147 0.93782 1.02615 1.03480 1.21560 0.95399 0.96310 0.83905 0.89799 1.21187 0.99100 0.94547 0.96961 1.20008 1.03239 0.98954 0.92824 1.20325 0.96352 0.93272 0.99455 1.20941 1.02525 1.00034 0.93913 1.20891 0.97511 0.97092 0.94685 1.21243 1.00853 0.95243 1.01214 1.18428 0.92851 0.88766 0.93278 1.46789 1.49007 1.25867 1.06800 1.23332 0.80420 0.86600 0.81733 1.90651 1.36375 1.27104 1.82008 1.21543 0.98117 0.96938 0.83332 1.43490 1.21113 1.47682 1.14013 1.18591 0.98522 0.94572 1.30132 0.90003 1.25459 0.95893 0.98543 0.95237 1.70070 1.30786 1.36572 1.12910 0.87110 0.80294 0.85609 0.77815 1.21373 1.22924 1.17408 1.21082 0.89508 0.91459 0.95103 1.26141 0.80380 0.87476 0.77632 1.90596 1.68628 1.16375 1.63811 1.84674 1.46749 1.46211 1.56768 0.90449 0.91553 0.92271 0.89655 0.89399 0.86189 0.85984 0.85513 0.84099 0.90274 0.88659 0.92329 0.90036 0.88381 0.75192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.07 37.16 0.34 -1.88 16 2 C 0.13 1.78 3.64 -67.52 -0.25 1.53 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 4 C -0.08 -0.85 6.59 -27.24 -0.18 -1.03 16 5 C -0.15 -1.79 6.23 -104.27 -0.65 -2.44 16 6 C -0.08 -0.78 10.03 -39.61 -0.40 -1.18 16 7 C -0.15 -1.57 10.06 -39.56 -0.40 -1.97 16 8 C -0.08 -0.95 10.02 -39.71 -0.40 -1.34 16 9 C -0.16 -2.26 8.88 -39.21 -0.35 -2.61 16 10 C 0.16 2.38 6.59 -83.57 -0.55 1.82 16 11 N -0.56 -9.09 2.89 -105.85 -0.31 -9.39 16 12 C 0.49 9.67 7.66 -10.98 -0.08 9.59 16 13 O -0.49 -11.29 13.19 5.56 0.07 -11.22 16 14 C 0.13 2.59 3.94 -5.19 -0.02 2.56 16 15 N -0.55 -12.90 1.07 -175.98 -0.19 -13.08 16 16 C -0.29 -8.07 9.79 -15.07 -0.15 -8.22 16 17 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 18 C 0.05 1.53 5.01 -17.43 -0.09 1.44 16 19 N -0.87 -26.01 13.97 55.49 0.78 -25.23 16 20 Si 0.86 22.44 24.68 -169.99 -4.19 18.24 16 21 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 22 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 23 H -0.25 -6.22 5.44 56.52 0.31 -5.92 16 24 C 0.16 3.44 4.56 -5.19 -0.02 3.41 16 25 C 0.44 9.12 8.39 36.00 0.30 9.43 16 26 O -0.51 -11.62 17.15 -18.75 -0.32 -11.94 16 27 O -0.53 -8.86 13.42 -39.26 -0.53 -9.39 16 28 H 0.08 1.32 6.77 -51.93 -0.35 0.97 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.80 7.70 -51.93 -0.40 0.40 16 33 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 36 H 0.14 2.03 4.21 -52.48 -0.22 1.81 16 37 H 0.08 1.40 6.85 -51.93 -0.36 1.04 16 38 H 0.10 1.86 6.80 -51.93 -0.35 1.50 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 41 H 0.10 2.29 4.45 -51.93 -0.23 2.06 16 42 H 0.39 4.64 9.10 45.56 0.41 5.05 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -34.72 343.58 -6.93 -41.65 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.53 Total: 6.06 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -2.89 Total: 9.13 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.28 Total: -47.71 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.78 Total: -32.55 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.19 Total: 18.24 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.72 -6.93 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828515716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.828 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds