Wall clock time and date at job start Tue Mar 31 2020 05:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.26491 * 2 1 4 4 C 1.53743 * 110.38512 * 122.12127 * 2 1 3 5 5 C 1.51211 * 104.58426 * 118.97227 * 4 2 1 6 6 C 1.38187 * 130.97344 * 179.97438 * 5 4 2 7 7 C 1.38224 * 120.15103 * 180.27883 * 6 5 4 8 8 C 1.38302 * 119.82805 * 359.51303 * 7 6 5 9 9 C 1.37839 * 120.22181 * 0.45939 * 8 7 6 10 10 C 1.38565 * 108.56318 * 359.97438 * 5 4 2 11 11 N 1.39838 * 111.61435 * 0.02562 * 10 5 4 12 12 C 1.34774 * 124.97884 * 179.97438 * 11 10 5 13 13 O 1.21285 * 120.00102 * 180.02562 * 12 11 10 14 14 C 1.50698 * 120.00062 * 0.02562 * 12 11 10 15 15 N 1.46503 * 109.47193 * 181.59663 * 14 12 11 16 16 C 1.36930 * 119.99797 * 93.48387 * 15 14 12 17 17 H 1.07996 * 120.00363 * 348.55098 * 16 15 14 18 18 C 1.38821 * 119.99626 * 168.55457 * 16 15 14 19 19 N 1.31617 * 119.99657 * 329.05402 * 18 16 15 20 20 Si 1.86798 * 119.99752 * 149.05477 * 18 16 15 21 21 H 1.48506 * 109.46940 * 94.98416 * 20 18 16 22 22 H 1.48504 * 109.47101 * 214.98183 * 20 18 16 23 23 H 1.48500 * 109.47405 * 334.98220 * 20 18 16 24 24 C 1.46498 * 119.99722 * 273.48319 * 15 14 12 25 25 C 1.50709 * 109.46919 * 270.50555 * 24 15 14 26 26 O 1.20823 * 120.00143 * 5.71337 * 25 24 15 27 27 O 1.34224 * 119.99514 * 185.71914 * 25 24 15 28 28 H 1.08997 * 109.46779 * 182.06094 * 1 2 3 29 29 H 1.09003 * 109.46886 * 302.05501 * 1 2 3 30 30 H 1.08990 * 109.47351 * 62.05614 * 1 2 3 31 31 H 1.08999 * 110.41084 * 0.19619 * 4 2 1 32 32 H 1.08998 * 110.41611 * 237.74635 * 4 2 1 33 33 H 1.07999 * 119.92533 * 359.97438 * 6 5 4 34 34 H 1.08004 * 120.09041 * 179.74534 * 7 6 5 35 35 H 1.08002 * 119.89227 * 180.25897 * 8 7 6 36 36 H 1.08000 * 119.85705 * 179.76749 * 9 8 7 37 37 H 1.09005 * 109.47028 * 301.59842 * 14 12 11 38 38 H 1.09002 * 109.47273 * 61.59385 * 14 12 11 39 39 H 0.97004 * 119.99562 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.47333 * 30.49832 * 24 15 14 41 41 H 1.08993 * 109.47355 * 150.50537 * 24 15 14 42 42 H 0.96700 * 116.99656 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9075 1.0226 0.0000 4 6 2.0655 -0.7663 1.2205 5 6 2.8626 -1.9090 0.6330 6 6 3.5730 -2.9257 1.2422 7 6 4.2355 -3.8659 0.4755 8 6 4.1776 -3.7928 -0.9043 9 6 3.4697 -2.7808 -1.5164 10 6 2.8020 -1.8245 -0.7488 11 7 2.0379 -0.7298 -1.1649 12 6 1.8033 -0.3947 -2.4491 13 8 1.1257 0.5772 -2.7081 14 6 2.3830 -1.2277 -3.5631 15 7 2.0183 -0.6387 -4.8540 16 6 2.8682 0.2407 -5.4698 17 1 3.7129 0.6430 -4.9304 18 6 2.6441 0.6151 -6.7877 19 7 2.0765 -0.2281 -7.6239 20 14 3.1480 2.3155 -7.3741 21 1 4.4954 2.2460 -7.9947 22 1 2.1665 2.8049 -8.3754 23 1 3.1827 3.2476 -6.2185 24 6 0.7442 -0.9905 -5.4858 25 6 0.9363 -2.1997 -6.3645 26 8 1.9979 -2.7766 -6.3747 27 8 -0.0719 -2.6356 -7.1360 28 1 -0.3633 -1.0270 0.0370 29 1 -0.3633 0.5454 0.8710 30 1 -0.3633 0.4815 -0.9077 31 1 1.2403 -1.1479 1.8218 32 1 2.7089 -0.1232 1.8209 33 1 3.6148 -2.9830 2.3199 34 1 4.7939 -4.6577 0.9528 35 1 4.6914 -4.5293 -1.5044 36 1 3.4315 -2.7272 -2.5944 37 1 3.4687 -1.2545 -3.4697 38 1 1.9880 -2.2418 -3.5019 39 1 1.9203 0.0334 -8.5448 40 1 0.0064 -1.2148 -4.7155 41 1 0.3952 -0.1536 -6.0906 42 1 0.0989 -3.4146 -7.6828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828515717.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:36 Heat of formation + Delta-G solvation = -50.641346 kcal Electronic energy + Delta-G solvation = -27513.881911 eV Core-core repulsion = 23653.507212 eV Total energy + Delta-G solvation = -3860.374699 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.09525 -38.81192 -38.31271 -36.50323 -35.37667 -34.34939 -33.08785 -31.40340 -30.85652 -29.51913 -28.25303 -26.64188 -26.41434 -23.56576 -22.27841 -21.86145 -21.12504 -20.14205 -19.38676 -17.06794 -16.95087 -16.62507 -16.40453 -15.87369 -15.53932 -15.13815 -15.07837 -14.37334 -14.31459 -14.09777 -13.92118 -13.58492 -13.35022 -13.24171 -12.92676 -12.81249 -12.42455 -12.30715 -11.86339 -11.80724 -11.55852 -11.45996 -11.15635 -11.05293 -10.91335 -10.71589 -10.66332 -10.29823 -10.12701 -10.04779 -9.93200 -9.64192 -9.16943 -8.77779 -8.54145 -7.62617 -7.23805 -6.03618 -3.25908 1.35783 1.40554 2.97782 3.11194 3.35767 3.44079 3.50823 3.85292 3.85713 4.24286 4.43031 4.50218 4.56137 4.92031 4.95909 5.01918 5.11524 5.16417 5.26052 5.33647 5.44373 5.47268 5.55869 5.59784 5.68599 5.89146 5.90977 5.97945 6.02619 6.07115 6.23878 6.28962 6.30884 6.46263 6.56211 6.65732 6.84306 6.89351 7.01082 7.61872 7.74906 7.85046 8.01949 8.54366 8.90334 9.40162 9.60599 10.00032 11.08395 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.004442 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.030507 B = 6302.342440 C = 6856.268915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 H 0.085 0.915 4 C -0.080 4.080 5 C -0.148 4.148 6 C -0.076 4.076 7 C -0.155 4.155 8 C -0.083 4.083 9 C -0.164 4.164 10 C 0.164 3.836 11 N -0.558 5.558 12 C 0.491 3.509 13 O -0.494 6.494 14 C 0.132 3.868 15 N -0.542 5.542 16 C -0.262 4.262 17 H 0.080 0.920 18 C 0.010 3.990 19 N -0.889 5.889 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.191 3.809 25 C 0.483 3.517 26 O -0.518 6.518 27 O -0.541 6.541 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.259 0.741 40 H 0.057 0.943 41 H 0.105 0.895 42 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -6.033 16.735 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.103 0.897 4 C -0.118 4.118 5 C -0.151 4.151 6 C -0.095 4.095 7 C -0.174 4.174 8 C -0.102 4.102 9 C -0.184 4.184 10 C 0.066 3.934 11 N -0.284 5.284 12 C 0.279 3.721 13 O -0.365 6.365 14 C 0.001 3.999 15 N -0.259 5.259 16 C -0.390 4.390 17 H 0.098 0.902 18 C -0.189 4.189 19 N -0.532 5.532 20 Si 0.730 3.270 21 H -0.215 1.215 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.062 3.938 25 C 0.323 3.677 26 O -0.405 6.405 27 O -0.351 6.351 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -1.301 -5.097 16.442 17.263 hybrid contribution 0.505 0.328 -0.885 1.071 sum -0.796 -4.769 15.556 16.290 Atomic orbital electron populations 1.22140 0.93897 1.02406 1.03459 1.21570 0.95295 0.96486 0.83901 0.89687 1.21180 0.99041 0.94602 0.96943 1.20005 1.03259 0.99000 0.92816 1.20322 0.96309 0.93383 0.99440 1.20947 1.02355 1.00173 0.93908 1.20903 0.97443 0.97140 0.94685 1.21271 1.00577 0.95279 1.01323 1.18420 0.92875 0.88808 0.93257 1.46688 1.48837 1.26121 1.06750 1.23370 0.80287 0.86600 0.81838 1.90650 1.36717 1.26899 1.82272 1.21088 0.99827 0.94123 0.84899 1.43549 1.18065 1.48965 1.15328 1.19121 1.08756 1.16392 0.94729 0.90182 1.24693 1.00519 0.98725 0.94974 1.69908 1.47164 1.32119 1.04020 0.86303 0.77596 0.84997 0.78146 1.21513 1.21292 1.20218 1.20112 0.87247 0.93331 0.93147 1.24995 0.80696 0.84285 0.77761 1.90493 1.26982 1.57237 1.65741 1.84602 1.46028 1.48497 1.55956 0.92418 0.91473 0.90546 0.89408 0.89616 0.86191 0.85982 0.85486 0.84013 0.88920 0.90576 0.93044 0.92508 0.87711 0.76255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.07 37.16 0.34 -1.66 16 2 C 0.13 1.73 3.65 -67.52 -0.25 1.48 16 3 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.08 -0.83 6.58 -27.25 -0.18 -1.01 16 5 C -0.15 -1.80 6.23 -104.27 -0.65 -2.45 16 6 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 7 C -0.15 -1.60 10.06 -39.56 -0.40 -1.99 16 8 C -0.08 -0.97 10.02 -39.70 -0.40 -1.37 16 9 C -0.16 -2.31 8.88 -39.21 -0.35 -2.66 16 10 C 0.16 2.39 6.59 -83.57 -0.55 1.84 16 11 N -0.56 -9.02 2.89 -105.84 -0.31 -9.32 16 12 C 0.49 9.66 7.66 -10.99 -0.08 9.58 16 13 O -0.49 -11.23 15.33 5.55 0.09 -11.14 16 14 C 0.13 2.71 3.98 -5.19 -0.02 2.69 16 15 N -0.54 -13.40 1.51 -175.98 -0.27 -13.67 16 16 C -0.26 -7.15 9.60 -15.06 -0.14 -7.29 16 17 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.01 0.27 4.67 -17.43 -0.08 0.19 16 19 N -0.89 -25.18 9.45 55.49 0.52 -24.66 16 20 Si 0.90 21.87 29.65 -169.99 -5.04 16.83 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.19 4.57 5.56 -5.19 -0.03 4.54 16 25 C 0.48 11.60 6.21 36.01 0.22 11.83 16 26 O -0.52 -13.87 16.93 -18.75 -0.32 -14.19 16 27 O -0.54 -11.10 13.42 -39.24 -0.53 -11.62 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.16 6.76 -51.93 -0.35 0.81 16 31 H 0.09 0.76 7.71 -51.93 -0.40 0.36 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 36 H 0.14 2.14 4.21 -52.49 -0.22 1.92 16 37 H 0.09 1.86 6.65 -51.93 -0.35 1.51 16 38 H 0.08 1.46 6.99 -51.93 -0.36 1.10 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 41 H 0.11 2.72 6.67 -51.93 -0.35 2.37 16 42 H 0.38 6.22 9.10 45.56 0.41 6.63 16 LS Contribution 348.52 15.07 5.25 5.25 Total: -1.00 -33.91 348.52 -8.11 -42.02 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -4.55 Total: 7.99 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: -2.97 Total: 12.52 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.05 Total: -47.65 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.76 Total: -36.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.04 Total: 16.83 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.91 -8.11 -42.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828515717.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.625 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds