Wall clock time and date at job start Tue Mar 31 2020 04:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47173 * 2 1 4 4 C 1.50699 * 109.46874 * 239.99285 * 2 1 3 5 5 H 1.08001 * 119.99981 * 239.99875 * 4 2 1 6 6 C 1.37876 * 119.99570 * 60.00616 * 4 2 1 7 7 N 1.31514 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99771 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47118 * 60.00127 * 8 6 4 10 10 H 1.48504 * 109.47036 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47374 * 300.00233 * 8 6 4 12 12 C 1.53004 * 109.46866 * 119.99936 * 2 1 3 13 13 N 1.46504 * 109.46928 * 299.99525 * 12 2 1 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 H 1.09003 * 112.84925 * 23.80369 * 17 16 14 19 19 C 1.53778 * 113.62012 * 155.00182 * 17 16 14 20 20 C 1.53782 * 87.08099 * 89.11541 * 19 17 16 21 21 H 1.08993 * 113.61914 * 270.88726 * 20 19 17 22 22 S 1.81404 * 113.61352 * 140.06751 * 20 19 17 23 23 C 1.81397 * 101.91985 * 185.00147 * 22 20 19 24 24 O 1.42099 * 108.57625 * 299.48686 * 22 20 19 25 25 O 1.42095 * 108.57722 * 70.51161 * 22 20 19 26 26 C 1.53781 * 87.08060 * 25.43709 * 20 19 17 27 27 H 1.09007 * 109.47177 * 300.00073 * 1 2 3 28 28 H 1.08994 * 109.47297 * 60.00189 * 1 2 3 29 29 H 1.08997 * 109.47361 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47135 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47144 * 299.99487 * 3 2 1 32 32 H 1.08998 * 109.47717 * 59.99943 * 3 2 1 33 33 H 0.96996 * 120.00389 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47202 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.47419 * 59.99682 * 12 2 1 36 36 H 0.97000 * 120.00410 * 0.02562 * 13 12 2 37 37 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 38 38 H 1.08992 * 113.61412 * 203.66626 * 19 17 16 39 39 H 1.09002 * 113.61167 * 334.48775 * 19 17 16 40 40 H 1.09000 * 109.47286 * 60.00282 * 23 22 20 41 41 H 1.09010 * 109.46952 * 179.97438 * 23 22 20 42 42 H 1.08994 * 109.47197 * 299.99921 * 23 22 20 43 43 H 1.09003 * 113.61607 * 220.02086 * 26 20 19 44 44 H 1.08996 * 113.61725 * 89.11585 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6992 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1199 -4.0078 9 1 1.8277 -2.5201 -4.0080 10 1 1.8268 -0.4202 -5.2204 11 1 3.8073 -1.1195 -4.0076 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8768 -0.4913 3.6696 15 8 2.5757 -1.4799 3.7812 16 7 1.4230 0.1409 4.7700 17 6 1.7715 -0.3633 6.1006 18 1 2.6867 -0.9554 6.1026 19 6 1.7323 0.7138 7.1974 20 6 0.2501 0.3520 7.3900 21 1 -0.4251 0.9228 6.7525 22 16 -0.2725 0.3287 9.1270 23 6 -1.9798 -0.2699 8.9966 24 8 0.4973 -0.6454 9.8182 25 8 -0.2967 1.6647 9.6104 26 6 0.5979 -1.0376 6.8307 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.7082 1.1607 -3.4844 34 1 3.1299 -0.7217 1.2491 35 1 1.6766 -1.7489 1.2494 36 1 0.9937 0.7580 2.3564 37 1 0.8656 0.9298 4.6810 38 1 2.3546 0.4802 8.0612 39 1 1.8911 1.7248 6.8223 40 1 -1.9844 -1.2575 8.5353 41 1 -2.4200 -0.3321 9.9919 42 1 -2.5609 0.4197 8.3844 43 1 -0.1605 -1.4404 6.1593 44 1 0.9100 -1.7500 7.5943 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883687481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:53 Heat of formation + Delta-G solvation = -79.112691 kcal Electronic energy + Delta-G solvation = -24922.530751 eV Core-core repulsion = 21196.365393 eV Total energy + Delta-G solvation = -3726.165358 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.32046 -38.62984 -37.31591 -36.39851 -36.34315 -33.47212 -32.85797 -30.72548 -30.03403 -26.34361 -26.24450 -25.76266 -25.46750 -24.56048 -21.14156 -20.15559 -19.11814 -18.79381 -18.42388 -17.28910 -16.54393 -16.36891 -16.14173 -15.83319 -15.12601 -14.91895 -14.77028 -14.02275 -13.95126 -13.68226 -13.61692 -13.37239 -13.15891 -12.99568 -12.89294 -12.68079 -12.44177 -12.33018 -12.21638 -11.48922 -11.42314 -11.35593 -11.22315 -11.14139 -10.87067 -10.75213 -10.42675 -10.38224 -10.24058 -9.87771 -9.66720 -9.35052 -9.12707 -8.83227 -8.44956 -8.27746 -6.04768 -4.14864 -0.38698 2.31342 2.89890 3.13946 3.28514 3.32830 3.36818 3.45149 3.48866 3.81780 3.96029 4.33950 4.36928 4.40702 4.43254 4.56958 4.65992 5.13382 5.18360 5.22122 5.22824 5.31330 5.45211 5.52249 5.71909 6.16462 6.32282 6.46411 6.54716 6.75255 6.78239 6.85652 6.99230 7.02861 7.22624 7.35731 7.52343 7.67018 7.97797 8.09032 8.33880 8.40098 8.84550 8.94895 9.51090 10.96668 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035159 B = 0.002277 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.190231 B =12293.523212 C =12501.070254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.057 3.943 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.699 3.301 15 O -0.596 6.596 16 N -0.736 5.736 17 C 0.158 3.842 18 H 0.114 0.886 19 C -0.116 4.116 20 C -0.605 4.605 21 H 0.151 0.849 22 S 2.424 3.576 23 C -0.655 4.655 24 O -0.937 6.937 25 O -0.943 6.943 26 C -0.130 4.130 27 H 0.005 0.995 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.085 0.915 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.394 0.606 37 H 0.394 0.606 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 1.586 20.431 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.399 3.601 15 O -0.474 6.474 16 N -0.392 5.392 17 C 0.050 3.950 18 H 0.132 0.868 19 C -0.156 4.156 20 C -0.714 4.714 21 H 0.169 0.831 22 S 2.607 3.393 23 C -0.804 4.804 24 O -0.934 6.934 25 O -0.940 6.940 26 C -0.170 4.170 27 H 0.024 0.976 28 H 0.104 0.896 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.024 0.976 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.228 0.772 37 H 0.228 0.772 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.109 0.891 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.124 1.012 21.091 21.729 hybrid contribution -0.958 0.197 -1.628 1.899 sum -6.082 1.210 19.464 20.428 Atomic orbital electron populations 1.21822 0.97822 0.99131 0.99963 1.18353 0.92751 0.92759 0.90533 1.21827 0.98627 0.98360 0.99988 1.20948 1.31558 1.12142 0.89866 0.92436 1.24875 0.94839 0.94913 0.98857 1.69788 1.36628 1.22764 1.23356 0.86625 0.79270 0.79783 0.82130 1.20274 1.21342 1.20251 1.21608 0.97960 0.95414 0.82312 1.45526 1.55463 1.33009 1.04569 1.16054 0.80422 0.82982 0.80643 1.90897 1.42990 1.27550 1.85967 1.44786 1.57195 1.33136 1.04074 1.21347 0.98359 0.94596 0.80702 0.86840 1.23052 0.90186 1.01770 1.00568 1.31749 1.07883 1.07871 1.23938 0.83115 1.07757 0.78076 0.75516 0.77971 1.30229 1.25007 1.13444 1.11761 1.93601 1.67839 1.62188 1.69763 1.93593 1.86391 1.35974 1.78023 1.23313 1.00651 0.92070 1.00984 0.97641 0.89631 0.95458 0.95413 0.89629 0.97598 0.92941 0.92869 0.92896 0.77165 0.77195 0.87470 0.88741 0.85164 0.85446 0.85368 0.89083 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.86 8.08 37.15 0.30 -2.56 16 4 C -0.51 -13.04 8.01 -34.44 -0.28 -13.32 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.25 9.35 55.43 0.52 -22.74 16 8 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.15 3.11 4.50 -4.04 -0.02 3.09 16 13 N -0.73 -12.36 4.96 -65.22 -0.32 -12.69 16 14 C 0.70 11.51 8.57 -86.92 -0.74 10.76 16 15 O -0.60 -12.22 15.94 5.28 0.08 -12.13 16 16 N -0.74 -8.31 5.27 -57.88 -0.30 -8.62 16 17 C 0.16 1.54 4.32 -67.12 -0.29 1.25 16 18 H 0.11 1.31 7.46 -51.93 -0.39 0.92 16 19 C -0.12 -0.83 7.42 -25.92 -0.19 -1.02 16 20 C -0.60 -3.45 4.03 -25.92 -0.10 -3.55 16 21 H 0.15 0.52 8.14 -51.93 -0.42 0.10 16 22 S 2.42 15.92 5.30 -107.50 -0.57 15.35 16 23 C -0.66 -2.39 10.62 101.05 1.07 -1.32 16 24 O -0.94 -9.34 17.35 -57.83 -1.00 -10.34 16 25 O -0.94 -9.77 18.10 -57.83 -1.05 -10.82 16 26 C -0.13 -0.96 7.43 -25.92 -0.19 -1.15 16 27 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 28 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 32 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 33 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.39 5.88 6.18 -40.82 -0.25 5.63 16 37 H 0.39 3.35 8.72 -40.82 -0.36 3.00 16 38 H 0.11 0.69 8.10 -51.93 -0.42 0.26 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.13 0.32 8.14 -51.92 -0.42 -0.11 16 41 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.11 0.75 7.49 -51.93 -0.39 0.36 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -34.59 365.12 -9.40 -43.98 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.92 Total: 4.57 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -0.31 Total: -7.52 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.11 Total: -44.04 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.97 Total: -33.30 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 15.92 SS G_CDS: -0.57 Total: 15.35 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.59 -9.40 -43.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883687481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.131 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds