Wall clock time and date at job start Tue Mar 31 2020 04:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47104 * 325.26663 * 3 2 1 5 5 C 1.36855 * 119.99585 * 97.74554 * 4 3 2 6 6 H 1.08005 * 119.99409 * 161.78194 * 5 4 3 7 7 C 1.39017 * 120.00116 * 342.05373 * 5 4 3 8 8 N 1.31392 * 119.99975 * 341.51597 * 7 5 4 9 9 Si 1.86800 * 120.00243 * 161.52224 * 7 5 4 10 10 H 1.48500 * 109.47293 * 59.99586 * 9 7 5 11 11 H 1.48497 * 109.47554 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47033 * 300.00046 * 9 7 5 13 13 C 1.34780 * 120.00365 * 277.74281 * 4 3 2 14 14 O 1.21743 * 119.99972 * 176.03924 * 13 4 3 15 15 C 1.46519 * 119.99542 * 356.03627 * 13 4 3 16 16 C 1.36668 * 125.98771 * 188.18810 * 15 13 4 17 17 C 1.40333 * 106.69984 * 179.85504 * 16 15 13 18 18 C 1.35171 * 107.12633 * 0.41072 * 17 16 15 19 19 C 1.50688 * 125.61163 * 179.74541 * 18 17 16 20 20 N 1.46906 * 109.47351 * 90.02380 * 19 18 17 21 21 C 1.47019 * 110.99485 * 293.63670 * 20 19 18 22 22 C 1.53107 * 109.25202 * 177.60654 * 21 20 19 23 23 O 1.43011 * 109.25750 * 56.84714 * 22 21 20 24 24 C 1.43012 * 113.74473 * 301.32629 * 23 22 21 25 25 C 1.47010 * 111.00062 * 170.00123 * 20 19 18 26 26 O 1.33971 * 108.77717 * 359.74277 * 18 17 16 27 27 H 4.40634 * 5.51350 * 179.97438 * 4 1 2 28 28 H 1.09007 * 109.46996 * 205.26687 * 3 2 1 29 29 H 1.08998 * 109.47361 * 85.27313 * 3 2 1 30 30 H 0.97001 * 119.99515 * 179.97438 * 8 7 5 31 31 H 1.08001 * 126.65337 * 0.02562 * 16 15 13 32 32 H 1.08002 * 126.44077 * 180.17595 * 17 16 15 33 33 H 1.08997 * 109.47516 * 210.02305 * 19 18 17 34 34 H 1.09003 * 109.47695 * 330.02584 * 19 18 17 35 35 H 1.09001 * 109.50662 * 297.53426 * 21 20 19 36 36 H 1.08993 * 109.51018 * 57.67390 * 21 20 19 37 37 H 1.09002 * 109.50661 * 296.91008 * 22 21 20 38 38 H 1.09001 * 109.53657 * 176.80593 * 22 21 20 39 39 H 1.09003 * 109.50221 * 298.74374 * 24 23 22 40 40 H 1.08992 * 109.54745 * 178.62643 * 24 23 22 41 41 H 1.08997 * 109.50853 * 302.32474 * 25 20 19 42 42 H 1.08995 * 109.51167 * 62.45833 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1342 0.7869 5 6 3.5140 -2.2895 0.1590 6 1 4.1370 -3.0052 0.6750 7 6 3.1020 -2.5394 -1.1450 8 7 2.0818 -1.8823 -1.6490 9 14 3.9986 -3.8093 -2.1808 10 1 3.9165 -5.1358 -1.5183 11 1 3.3695 -3.8864 -3.5237 12 1 5.4231 -3.4149 -2.3240 13 6 3.2112 -1.0405 2.1293 14 8 3.5485 -2.0067 2.7887 15 6 2.8882 0.2242 2.7949 16 6 3.0727 0.5045 4.1197 17 6 2.6324 1.8221 4.3183 18 6 2.1953 2.2800 3.1239 19 6 1.6265 3.6511 2.8647 20 7 2.7119 4.5700 2.4965 21 6 3.6258 4.7859 3.6278 22 6 4.7715 5.6994 3.1840 23 8 4.2306 6.9250 2.6833 24 6 3.3366 6.7520 1.5806 25 6 2.1764 5.8490 2.0080 26 8 2.3512 1.3142 2.2086 27 1 -1.0498 -0.0001 0.0003 28 1 3.0089 0.9302 0.4387 29 1 3.0094 -0.0839 -1.0241 30 1 1.7947 -2.0564 -2.5590 31 1 3.4810 -0.1584 4.8682 32 1 2.6377 2.3666 5.2509 33 1 0.9044 3.5968 2.0500 34 1 1.1317 4.0155 3.7650 35 1 3.0838 5.2546 4.4492 36 1 4.0301 3.8287 3.9568 37 1 5.3460 5.2076 2.3991 38 1 5.4211 5.9085 4.0340 39 1 3.8695 6.2907 0.7491 40 1 2.9479 7.7219 1.2706 41 1 1.5228 5.6679 1.1548 42 1 1.6113 6.3347 2.8035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890402610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:15 Heat of formation + Delta-G solvation = 25.557781 kcal Electronic energy + Delta-G solvation = -27055.409174 eV Core-core repulsion = 23198.338717 eV Total energy + Delta-G solvation = -3857.070457 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.17709 -39.66759 -38.37525 -36.10061 -35.33128 -32.67060 -32.13491 -31.39308 -31.27710 -30.64822 -27.87960 -26.50787 -25.33319 -24.29127 -24.00279 -21.63443 -20.81298 -20.53277 -19.50517 -17.95786 -17.20011 -16.92278 -16.42086 -16.33778 -15.86529 -15.40299 -15.31558 -15.13527 -14.90066 -14.31096 -14.21504 -13.96431 -13.70226 -13.17973 -12.85347 -12.77973 -12.62125 -12.47054 -12.35357 -12.02542 -11.74776 -11.61875 -11.59129 -11.21463 -11.04057 -10.77664 -10.62617 -10.44458 -9.91335 -9.54170 -9.41671 -9.38178 -8.90342 -8.75018 -8.65465 -8.05722 -7.92457 -6.49221 -3.98329 1.69981 2.71737 3.13645 3.17637 3.19820 3.24112 3.60893 3.73293 3.76679 4.03156 4.12982 4.22607 4.62968 4.70933 4.75857 4.90132 4.92942 4.95927 4.99617 5.12117 5.25923 5.31137 5.34664 5.40843 5.46238 5.52647 5.56443 5.66419 5.68070 5.75672 6.14130 6.21707 6.28836 6.57597 6.65549 6.71465 6.78580 6.87960 6.92712 7.03984 7.40136 7.44702 7.92668 8.28744 8.83760 8.95284 9.16620 9.73659 10.50297 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.003645 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.950290 B = 7680.941232 C = 8130.914823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.101 4.101 3 C 0.224 3.776 4 N -0.413 5.413 5 C -0.311 4.311 6 H 0.109 0.891 7 C 0.033 3.967 8 N -0.851 5.851 9 Si 0.931 3.069 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.505 3.495 14 O -0.570 6.570 15 C -0.016 4.016 16 C -0.168 4.168 17 C -0.207 4.207 18 C -0.015 4.015 19 C 0.137 3.863 20 N -0.533 5.533 21 C 0.013 3.987 22 C 0.064 3.936 23 O -0.388 6.388 24 C 0.064 3.936 25 C 0.019 3.981 26 O -0.142 6.142 27 H 0.199 0.801 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.274 0.726 31 H 0.151 0.849 32 H 0.142 0.858 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 16.682 5.020 17.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.103 4.103 3 C 0.101 3.899 4 N -0.128 5.128 5 C -0.438 4.438 6 H 0.127 0.873 7 C -0.173 4.173 8 N -0.488 5.488 9 Si 0.756 3.244 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.294 3.706 14 O -0.456 6.456 15 C -0.070 4.070 16 C -0.189 4.189 17 C -0.227 4.227 18 C -0.068 4.068 19 C 0.011 3.989 20 N -0.259 5.259 21 C -0.115 4.115 22 C -0.013 4.013 23 O -0.307 6.307 24 C -0.013 4.013 25 C -0.109 4.109 26 O -0.037 6.037 27 H 0.216 0.784 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.101 16.184 4.466 16.789 hybrid contribution -0.642 -0.592 0.128 0.883 sum -0.743 15.593 4.594 16.272 Atomic orbital electron populations 1.24203 0.95315 1.04170 1.04796 1.22967 0.94101 0.96641 0.96573 1.18536 0.84681 0.87818 0.98846 1.43688 1.52421 1.13057 1.03634 1.19765 1.29226 0.98482 0.96326 0.87287 1.25444 0.95211 0.98673 0.97995 1.70073 1.21085 1.41097 1.16552 0.85923 0.79547 0.80521 0.78381 1.19540 1.20765 1.19548 1.16440 0.87018 0.84823 0.82302 1.90703 1.54986 1.36030 1.63889 1.22852 1.03024 0.87839 0.93274 1.21671 1.05414 0.96352 0.95467 1.21379 1.06937 0.96378 0.98054 1.22183 1.05268 0.91245 0.88096 1.20384 0.92013 0.85014 1.01529 1.62126 1.17855 1.11470 1.34434 1.22906 0.95213 1.01316 0.92068 1.22678 0.94601 0.84623 0.99406 1.87961 1.62647 1.30205 1.49871 1.22662 0.89965 0.99473 0.89233 1.22798 0.97712 0.89642 1.00758 1.84384 1.62321 1.20226 1.36790 0.78430 0.90516 0.86646 0.91583 0.83151 0.84011 0.88675 0.91716 0.93912 0.88686 0.92004 0.88412 0.91992 0.88423 0.89219 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.71 19.25 29.55 0.57 -5.14 16 2 C -0.10 -2.37 10.58 -37.12 -0.39 -2.76 16 3 C 0.22 5.22 4.75 -6.83 -0.03 5.19 16 4 N -0.41 -10.79 2.60 -119.48 -0.31 -11.10 16 5 C -0.31 -8.48 9.32 -15.02 -0.14 -8.62 16 6 H 0.11 3.07 7.40 -52.48 -0.39 2.68 16 7 C 0.03 0.84 4.94 -17.45 -0.09 0.75 16 8 N -0.85 -21.93 9.41 55.50 0.52 -21.40 16 9 Si 0.93 19.88 29.59 -169.99 -5.03 14.85 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 12 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 13 C 0.50 13.10 7.50 -12.92 -0.10 13.00 16 14 O -0.57 -16.29 16.55 5.15 0.09 -16.20 16 15 C -0.02 -0.35 6.70 -36.81 -0.25 -0.60 16 16 C -0.17 -3.14 10.64 -39.36 -0.42 -3.56 16 17 C -0.21 -3.15 9.31 -39.89 -0.37 -3.52 16 18 C -0.02 -0.24 6.23 -35.41 -0.22 -0.46 16 19 C 0.14 1.65 5.49 -4.98 -0.03 1.62 16 20 N -0.53 -6.16 4.72 -235.75 -1.11 -7.27 16 21 C 0.01 0.14 5.39 -3.70 -0.02 0.12 16 22 C 0.06 0.64 7.01 37.21 0.26 0.90 16 23 O -0.39 -4.27 10.83 -35.23 -0.38 -4.65 16 24 C 0.06 0.58 7.01 37.21 0.26 0.84 16 25 C 0.02 0.17 5.65 -3.71 -0.02 0.15 16 26 O -0.14 -2.79 6.53 4.89 0.03 -2.75 16 27 H 0.20 3.45 7.80 -54.10 -0.42 3.03 16 28 H 0.08 1.65 5.55 -51.93 -0.29 1.37 16 29 H 0.12 2.77 6.24 -51.93 -0.32 2.45 16 30 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.15 2.69 8.06 -52.49 -0.42 2.27 16 32 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.09 1.11 8.04 -51.93 -0.42 0.69 16 34 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 1.09 6.19 -51.93 -0.32 0.77 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 42 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -31.72 352.00 -7.39 -39.11 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.52 Total: 6.21 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.98 Total: -2.09 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: -0.90 Total: -39.77 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.26 Total: -23.61 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.72 -7.39 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890402610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.670 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds