Wall clock time and date at job start Tue Mar 31 2020 04:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47393 * 2 1 4 4 H 1.09008 * 109.72101 * 332.00145 * 3 2 1 5 5 C 1.51338 * 109.60090 * 211.61075 * 3 2 1 6 6 O 1.21277 * 120.34819 * 128.52771 * 5 3 2 7 7 N 1.34253 * 119.29594 * 308.50017 * 5 3 2 8 8 C 1.46702 * 120.37510 * 357.16438 * 7 5 3 9 9 C 1.53029 * 109.06944 * 288.68902 * 8 7 5 10 10 C 1.52004 * 110.23236 * 88.53916 * 9 8 7 11 11 N 1.46072 * 111.79292 * 297.56040 * 10 9 8 12 12 S 1.65595 * 119.80707 * 242.92758 * 11 10 9 13 13 O 1.42102 * 104.27855 * 153.65383 * 12 11 10 14 14 O 1.42102 * 104.27778 * 25.79516 * 12 11 10 15 15 C 1.81400 * 104.44991 * 269.72378 * 12 11 10 16 16 C 1.53000 * 109.47040 * 180.02562 * 15 12 11 17 17 C 1.53002 * 109.47345 * 180.02562 * 16 15 12 18 18 C 1.50704 * 109.47475 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99598 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99867 * 180.27585 * 18 17 16 21 21 N 1.31514 * 120.00321 * 359.72361 * 20 18 17 22 22 Si 1.86802 * 119.99756 * 179.72612 * 20 18 17 23 23 H 1.48507 * 109.47194 * 89.99831 * 22 20 18 24 24 H 1.48503 * 109.47031 * 209.99879 * 22 20 18 25 25 H 1.48497 * 109.47059 * 329.99663 * 22 20 18 26 26 H 1.09001 * 109.46944 * 300.00112 * 1 2 3 27 27 H 1.08995 * 109.47093 * 59.99861 * 1 2 3 28 28 H 1.09003 * 109.46684 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46944 * 239.99887 * 2 1 3 30 30 H 1.09001 * 109.47742 * 119.99970 * 2 1 3 31 31 H 0.96998 * 119.80864 * 177.13618 * 7 5 3 32 32 H 1.08998 * 109.53520 * 48.56826 * 8 7 5 33 33 H 1.08994 * 109.53069 * 168.81090 * 8 7 5 34 34 H 1.09004 * 109.35173 * 208.89113 * 9 8 7 35 35 H 1.09006 * 109.35552 * 328.45924 * 9 8 7 36 36 H 1.09005 * 108.96665 * 176.92778 * 10 9 8 37 37 H 1.09006 * 108.89801 * 58.13996 * 10 9 8 38 38 H 1.08996 * 109.47154 * 60.00477 * 15 12 11 39 39 H 1.08995 * 109.47189 * 299.99590 * 15 12 11 40 40 H 1.09004 * 109.47454 * 60.00080 * 16 15 12 41 41 H 1.09004 * 109.47419 * 299.99592 * 16 15 12 42 42 H 1.09000 * 109.47236 * 59.99793 * 17 16 15 43 43 H 1.08998 * 109.46915 * 300.00286 * 17 16 15 44 44 H 0.97003 * 120.00058 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3085 2.0913 -0.4817 5 6 3.3540 1.5164 -0.7473 6 8 3.5106 2.3304 -1.6325 7 7 4.3446 0.6716 -0.4195 8 6 4.1782 -0.2709 0.6924 9 6 4.2026 0.5034 2.0121 10 6 2.8012 0.9662 2.3760 11 7 2.2586 1.8871 1.3804 12 16 1.8946 3.4440 1.8112 13 8 2.0115 4.1791 0.6007 14 8 2.7481 3.7107 2.9156 15 6 0.1632 3.3723 2.3475 16 6 -0.2965 4.7675 2.7753 17 6 -1.7566 4.7069 3.2283 18 6 -2.2092 6.0810 3.6503 19 1 -1.5238 6.9141 3.6008 20 6 -3.4964 6.2733 4.1055 21 7 -4.3309 5.2587 4.1662 22 14 -4.0550 7.9752 4.6357 23 1 -4.6252 8.6950 3.4687 24 1 -5.0897 7.8492 5.6935 25 1 -2.8942 8.7340 5.1666 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.1748 0.6842 -0.9209 32 1 3.2247 -0.7892 0.5913 33 1 4.9918 -0.9962 0.6801 34 1 4.5883 -0.1412 2.8020 35 1 4.8520 1.3728 1.9089 36 1 2.8335 1.4666 3.3438 37 1 2.1495 0.0955 2.4482 38 1 0.0716 2.6854 3.1888 39 1 -0.4583 3.0223 1.5233 40 1 -0.2050 5.4542 1.9338 41 1 0.3249 5.1180 3.5995 42 1 -1.8478 4.0203 4.0700 43 1 -2.3783 4.3562 2.4046 44 1 -5.2366 5.3941 4.4861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922015168.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:18 Heat of formation + Delta-G solvation = -103.709378 kcal Electronic energy + Delta-G solvation = -26284.241836 eV Core-core repulsion = 22557.009886 eV Total energy + Delta-G solvation = -3727.231950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81668 -37.62513 -36.98794 -35.78679 -35.17826 -34.69702 -33.47524 -32.19966 -31.28074 -27.87665 -27.38519 -25.81847 -23.71459 -23.62451 -20.92500 -20.68999 -20.40717 -19.10348 -17.97955 -17.53220 -16.88065 -16.65774 -16.10594 -15.63618 -15.38640 -14.99150 -14.49996 -14.39119 -14.25703 -14.14948 -13.88992 -13.71088 -12.98633 -12.72809 -12.64034 -12.60711 -12.30050 -12.07499 -11.98441 -11.90427 -11.81302 -11.76280 -11.36338 -11.30549 -11.07722 -10.92745 -10.91118 -10.84954 -10.42852 -10.29991 -9.96970 -9.49285 -9.29557 -9.23708 -8.98054 -8.41513 -6.06650 -4.09597 0.32365 2.22717 2.80726 3.06226 3.30460 3.36515 3.40752 3.93959 4.06554 4.19835 4.29530 4.40635 4.42453 4.53922 4.62487 4.70934 4.89109 4.98437 5.04591 5.14217 5.18359 5.21127 5.29856 5.31972 5.37359 5.45025 5.58549 5.64092 5.72596 5.84231 5.89516 5.99966 6.21121 6.33943 6.42191 6.60050 6.84867 6.97858 7.55295 7.65048 7.91317 8.04373 8.31806 8.96507 9.55267 11.04531 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.003267 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.340031 B = 8568.260486 C = 8784.095839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.143 4.143 3 C 0.139 3.861 4 H 0.125 0.875 5 C 0.510 3.490 6 O -0.524 6.524 7 N -0.726 5.726 8 C 0.082 3.918 9 C -0.159 4.159 10 C 0.108 3.892 11 N -0.991 5.991 12 S 2.585 3.415 13 O -0.944 6.944 14 O -0.956 6.956 15 C -0.606 4.606 16 C -0.106 4.106 17 C 0.032 3.968 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.398 0.602 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.254 -18.730 -5.776 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.181 4.181 3 C 0.030 3.970 4 H 0.143 0.857 5 C 0.294 3.706 6 O -0.397 6.397 7 N -0.380 5.380 8 C -0.042 4.042 9 C -0.199 4.199 10 C -0.017 4.017 11 N -0.828 5.828 12 S 2.683 3.317 13 O -0.934 6.934 14 O -0.946 6.946 15 C -0.738 4.738 16 C -0.146 4.146 17 C -0.007 4.007 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.234 0.766 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.597 -17.622 -6.144 24.321 hybrid contribution -0.556 0.428 0.326 0.774 sum 15.040 -17.193 -5.818 23.573 Atomic orbital electron populations 1.21901 0.94087 1.02639 1.03055 1.22289 0.97659 0.94400 1.03765 1.21390 0.94814 0.99009 0.81807 0.85683 1.21112 0.86436 0.79901 0.83177 1.90797 1.81832 1.35469 1.31639 1.45972 1.18169 1.38643 1.35199 1.22284 1.04677 0.91612 0.85578 1.22242 0.98010 1.01678 0.97947 1.21122 0.94371 0.94574 0.91641 1.57823 1.78385 1.31782 1.14809 1.05984 0.78467 0.72575 0.74706 1.93642 1.86468 1.68482 1.44834 1.93563 1.63669 1.82380 1.55008 1.30580 1.22078 1.09056 1.12042 1.21521 1.02869 0.89206 1.00984 1.19059 0.87405 0.97551 0.96647 1.21252 0.97215 0.94559 1.43446 0.92369 1.25010 0.96721 0.97011 0.95585 1.69954 1.06019 1.30409 1.47055 0.86557 0.78509 0.84361 0.78401 1.20537 1.21172 1.19730 0.91731 0.91952 0.91853 0.90358 0.88519 0.76580 0.88232 0.89644 0.89160 0.90473 0.88187 0.90423 0.85317 0.85329 0.91524 0.91613 0.96101 0.96073 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.73 37.16 0.36 -0.76 16 2 C -0.14 -0.97 3.93 -26.73 -0.11 -1.08 16 3 C 0.14 1.51 2.23 -68.68 -0.15 1.36 16 4 H 0.13 1.50 7.14 -51.92 -0.37 1.13 16 5 C 0.51 6.52 6.86 -10.91 -0.07 6.45 16 6 O -0.52 -9.26 17.95 5.56 0.10 -9.16 16 7 N -0.73 -6.24 5.29 -60.04 -0.32 -6.56 16 8 C 0.08 0.43 6.34 -3.92 -0.02 0.40 16 9 C -0.16 -1.02 5.91 -27.22 -0.16 -1.18 16 10 C 0.11 0.85 5.44 -4.78 -0.03 0.82 16 11 N -0.99 -10.98 2.83 -108.95 -0.31 -11.29 16 12 S 2.58 39.54 5.35 -107.50 -0.57 38.97 16 13 O -0.94 -18.02 16.91 -57.54 -0.97 -18.99 16 14 O -0.96 -16.67 16.56 -57.54 -0.95 -17.63 16 15 C -0.61 -9.15 6.18 37.16 0.23 -8.92 16 16 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 17 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 18 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 22 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.47 7.69 -51.93 -0.40 0.08 16 30 H 0.10 0.46 3.44 -51.93 -0.18 0.28 16 31 H 0.40 3.01 8.93 -40.82 -0.36 2.64 16 32 H 0.10 0.40 3.65 -51.93 -0.19 0.21 16 33 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.69 8.04 -51.93 -0.42 0.28 16 36 H 0.10 0.85 6.87 -51.93 -0.36 0.49 16 37 H 0.08 0.38 6.35 -51.93 -0.33 0.05 16 38 H 0.13 1.66 8.14 -51.93 -0.42 1.24 16 39 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -38.20 358.05 -9.35 -47.55 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.80 Total: -1.07 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -0.64 Total: -18.11 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.11 Total: -43.50 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -1.83 Total: -45.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 39.54 SS G_CDS: -0.57 Total: 38.97 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -38.20 -9.35 -47.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922015168.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.155 kcal (2) G-P(sol) polarization free energy of solvation -38.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds