Wall clock time and date at job start Tue Mar 31 2020 04:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47373 * 2 1 4 4 C 1.50698 * 109.47350 * 120.00160 * 2 1 3 5 5 O 1.21284 * 120.00319 * 121.77033 * 4 2 1 6 6 N 1.34771 * 120.00158 * 301.77843 * 4 2 1 7 7 C 1.46929 * 120.63002 * 354.97366 * 6 4 2 8 8 C 1.53191 * 108.76633 * 126.40750 * 7 6 4 9 9 C 1.53043 * 109.31243 * 54.65729 * 8 7 6 10 10 C 1.53039 * 109.52305 * 298.61200 * 9 8 7 11 11 H 1.08995 * 109.50102 * 301.41877 * 10 9 8 12 12 N 1.46500 * 109.49248 * 181.35470 * 10 9 8 13 13 C 1.36937 * 119.99904 * 85.00339 * 12 10 9 14 14 H 1.08007 * 120.00099 * 359.97438 * 13 12 10 15 15 C 1.38813 * 120.00405 * 179.97438 * 13 12 10 16 16 N 1.31614 * 119.99726 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00207 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47220 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46843 * 120.00720 * 17 15 13 20 20 H 1.48508 * 109.47046 * 240.00442 * 17 15 13 21 21 C 1.46927 * 120.63486 * 174.99815 * 6 4 2 22 22 S 1.81397 * 109.46973 * 240.00032 * 2 1 3 23 23 C 1.81404 * 101.92079 * 60.00324 * 22 2 1 24 24 O 1.42104 * 108.57830 * 174.48519 * 22 2 1 25 25 O 1.42099 * 108.57956 * 305.51527 * 22 2 1 26 26 H 1.09006 * 109.46707 * 289.37019 * 1 2 3 27 27 H 1.09006 * 109.47161 * 49.36426 * 1 2 3 28 28 H 1.08997 * 109.47325 * 169.37123 * 1 2 3 29 29 H 1.08998 * 109.47436 * 190.19378 * 3 2 1 30 30 H 1.09000 * 109.47219 * 310.20216 * 3 2 1 31 31 H 1.09003 * 109.46974 * 70.19714 * 3 2 1 32 32 H 1.09004 * 109.58799 * 246.20667 * 7 6 4 33 33 H 1.08996 * 109.58499 * 6.62687 * 7 6 4 34 34 H 1.08998 * 109.50964 * 294.69836 * 8 7 6 35 35 H 1.08998 * 109.48283 * 174.60027 * 8 7 6 36 36 H 1.08995 * 109.45728 * 178.60162 * 9 8 7 37 37 H 1.08995 * 109.46024 * 58.62579 * 9 8 7 38 38 H 0.96996 * 120.00420 * 264.99911 * 12 10 9 39 39 H 0.97006 * 120.00332 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.58902 * 113.79826 * 21 6 4 41 41 H 1.09007 * 109.58364 * 353.36757 * 21 6 4 42 42 H 1.08994 * 109.47208 * 59.99745 * 23 22 2 43 43 H 1.08996 * 109.47329 * 180.02562 * 23 22 2 44 44 H 1.09008 * 109.46907 * 299.99584 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7559 -1.6774 1.1194 6 7 1.6775 -0.2713 2.4542 7 6 0.8929 0.9613 2.6088 8 6 -0.3484 0.6528 3.4519 9 6 0.0835 0.0130 4.7734 10 6 0.8138 -1.3018 4.4905 11 1 0.1557 -1.9718 3.9374 12 7 1.1985 -1.9296 5.7570 13 6 0.3055 -2.7224 6.4272 14 1 -0.6826 -2.8845 6.0223 15 6 0.6700 -3.3178 7.6270 16 7 1.8739 -3.1199 8.1207 17 14 -0.5485 -4.3987 8.5415 18 1 -1.8230 -4.4600 7.7820 19 1 0.0110 -5.7673 8.6803 20 1 -0.8017 -3.8285 9.8892 21 6 2.0683 -1.0158 3.6591 22 16 2.1346 -0.8551 -1.4811 23 6 1.4229 0.1516 -2.8118 24 8 3.5496 -0.7330 -1.5285 25 8 1.5478 -2.1484 -1.5285 26 1 -0.3633 0.3409 0.9696 27 1 -0.3634 0.6693 -0.7799 28 1 -0.3634 -1.0100 -0.1895 29 1 3.1147 1.4479 -0.1819 30 1 1.5358 2.0062 -0.7849 31 1 1.8329 1.9010 0.9669 32 1 1.4964 1.7182 3.1099 33 1 0.5872 1.3253 1.6280 34 1 -0.9954 -0.0358 2.9087 35 1 -0.8889 1.5773 3.6548 36 1 -0.7963 -0.1847 5.3857 37 1 0.7505 0.6919 5.3046 38 1 2.0857 -1.7838 6.1209 39 1 2.1286 -3.5357 8.9593 40 1 2.7676 -0.4201 4.2459 41 1 2.5381 -1.9563 3.3712 42 1 1.7893 1.1747 -2.7291 43 1 1.7151 -0.2625 -3.7767 44 1 0.3359 0.1471 -2.7291 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000369348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:58 Heat of formation + Delta-G solvation = -69.266432 kcal Electronic energy + Delta-G solvation = -26504.538477 eV Core-core repulsion = 22778.800085 eV Total energy + Delta-G solvation = -3725.738392 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.76229 -37.57713 -37.16343 -36.16779 -35.93447 -34.21688 -32.21798 -31.30729 -29.85375 -28.32997 -27.99285 -25.94724 -23.98404 -23.35142 -22.12095 -20.80506 -19.40274 -18.66966 -17.31943 -17.15543 -17.04168 -16.15201 -16.09865 -15.47171 -15.33573 -14.79739 -14.52610 -14.39827 -14.03389 -13.74592 -13.56803 -13.53918 -13.43884 -13.22830 -12.86721 -12.62494 -12.55630 -12.42674 -12.17361 -12.15989 -12.14473 -11.82265 -11.24775 -11.07723 -11.05287 -10.94124 -10.76582 -10.61232 -10.47351 -10.39573 -10.10702 -9.85590 -9.67716 -8.95456 -8.57481 -7.02759 -5.80443 -3.10526 -0.32403 2.38700 2.46377 2.77307 3.41839 3.47520 3.49804 3.53899 3.71056 3.98661 4.14183 4.27805 4.43217 4.55536 4.66961 4.75145 4.88626 4.96558 4.96747 5.08498 5.10351 5.16240 5.27451 5.38334 5.46404 5.53657 5.58845 5.66205 5.67553 5.71749 5.94422 6.07680 6.13706 6.30561 6.45083 6.54432 6.78843 6.96919 7.32026 7.67001 7.95821 8.37099 9.48628 10.02890 10.37903 11.41978 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.003358 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.729367 B = 8336.082499 C = 8709.143875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.576 4.576 3 C -0.157 4.157 4 C 0.548 3.452 5 O -0.529 6.529 6 N -0.588 5.588 7 C 0.081 3.919 8 C -0.137 4.137 9 C -0.138 4.138 10 C 0.168 3.832 11 H 0.051 0.949 12 N -0.721 5.721 13 C -0.240 4.240 14 H 0.071 0.929 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.104 3.896 22 S 2.453 3.547 23 C -0.664 4.664 24 O -0.921 6.921 25 O -0.919 6.919 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.388 15.705 -21.108 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.666 4.666 3 C -0.215 4.215 4 C 0.333 3.667 5 O -0.406 6.406 6 N -0.320 5.320 7 C -0.041 4.041 8 C -0.176 4.176 9 C -0.178 4.178 10 C 0.057 3.943 11 H 0.069 0.931 12 N -0.361 5.361 13 C -0.371 4.371 14 H 0.089 0.911 15 C -0.207 4.207 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.219 1.219 21 C -0.018 4.018 22 S 2.629 3.371 23 C -0.813 4.813 24 O -0.918 6.918 25 O -0.916 6.916 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.612 14.322 -21.109 25.764 hybrid contribution -0.948 0.312 0.905 1.347 sum -4.560 14.634 -20.204 25.361 Atomic orbital electron populations 1.22207 0.87907 1.05075 1.06477 1.30425 1.08281 1.10682 1.17194 1.22188 1.03057 0.89900 1.06315 1.19027 0.80539 0.83567 0.83559 1.90858 1.36685 1.27283 1.85751 1.47832 1.53176 1.25457 1.05491 1.22465 0.93396 0.86444 1.01767 1.22006 0.96487 1.01171 0.97891 1.22293 1.01555 0.98835 0.95132 1.20478 0.93013 0.92629 0.88183 0.93051 1.42306 1.16046 1.57016 1.20779 1.19241 0.94883 1.21254 1.01759 0.91072 1.24757 0.96813 1.00955 0.98221 1.69670 1.18536 1.48214 1.21421 0.86110 0.80198 0.80221 0.79597 1.20538 1.21769 1.21856 1.22152 0.98342 0.97351 0.83999 1.07458 0.76042 0.76410 0.77158 1.30431 1.14328 1.16843 1.19672 1.93574 1.26523 1.86509 1.85164 1.93587 1.79357 1.33574 1.85114 0.88140 0.89930 0.89649 0.89742 0.89889 0.88431 0.90911 0.87838 0.91584 0.91099 0.91390 0.92376 0.78133 0.93455 0.91208 0.88554 0.85096 0.84985 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 7.65 37.16 0.28 -0.83 16 2 C -0.58 -5.67 0.59 -91.78 -0.05 -5.73 16 3 C -0.16 -0.98 7.66 37.16 0.28 -0.69 16 4 C 0.55 8.30 6.50 -10.99 -0.07 8.23 16 5 O -0.53 -10.54 15.06 2.54 0.04 -10.50 16 6 N -0.59 -8.31 2.97 -172.76 -0.51 -8.82 16 7 C 0.08 0.81 3.93 -3.71 -0.01 0.80 16 8 C -0.14 -1.52 5.74 -26.61 -0.15 -1.67 16 9 C -0.14 -2.20 5.47 -26.69 -0.15 -2.35 16 10 C 0.17 3.26 2.92 -67.81 -0.20 3.06 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 12 N -0.72 -17.77 5.13 -53.31 -0.27 -18.05 16 13 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 14 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 15 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 17 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 21 C 0.10 1.83 5.89 -3.71 -0.02 1.80 16 22 S 2.45 27.57 3.65 -107.50 -0.39 27.18 16 23 C -0.66 -3.18 9.78 101.05 0.99 -2.19 16 24 O -0.92 -13.74 17.49 -59.99 -1.05 -14.79 16 25 O -0.92 -14.11 17.55 -59.04 -1.04 -15.15 16 26 H 0.10 0.69 3.88 -51.93 -0.20 0.49 16 27 H 0.08 0.22 7.03 -51.93 -0.36 -0.14 16 28 H 0.08 0.69 7.74 -51.93 -0.40 0.29 16 29 H 0.08 0.59 7.75 -51.93 -0.40 0.19 16 30 H 0.08 0.18 7.00 -51.93 -0.36 -0.18 16 31 H 0.10 0.55 4.74 -51.93 -0.25 0.31 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.70 2.83 -51.93 -0.15 0.55 16 34 H 0.07 0.73 7.43 -51.93 -0.39 0.35 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.10 1.94 7.04 -51.93 -0.37 1.58 16 42 H 0.13 0.30 7.14 -51.93 -0.37 -0.07 16 43 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.13 0.33 7.16 -51.92 -0.37 -0.04 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -38.42 347.95 -8.07 -46.49 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.44 Total: 5.04 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 0.65 Total: -6.72 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.06 Total: -54.11 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -2.05 Total: -40.44 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 27.57 SS G_CDS: -0.39 Total: 27.18 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -38.42 -8.07 -46.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000369348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.779 kcal (2) G-P(sol) polarization free energy of solvation -38.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds