Wall clock time and date at job start Tue Mar 31 2020 04:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47373 * 2 1 4 4 C 1.50698 * 109.47350 * 120.00160 * 2 1 3 5 5 O 1.21284 * 120.00319 * 121.77033 * 4 2 1 6 6 N 1.34771 * 120.00158 * 301.77843 * 4 2 1 7 7 C 1.46929 * 120.63002 * 354.97366 * 6 4 2 8 8 C 1.53191 * 108.76633 * 126.40750 * 7 6 4 9 9 C 1.53043 * 109.31243 * 54.65729 * 8 7 6 10 10 C 1.53039 * 109.52305 * 298.61200 * 9 8 7 11 11 H 1.08995 * 109.50102 * 301.41877 * 10 9 8 12 12 N 1.46500 * 109.49248 * 181.35470 * 10 9 8 13 13 C 1.36937 * 119.99904 * 85.00339 * 12 10 9 14 14 H 1.08007 * 120.00099 * 359.97438 * 13 12 10 15 15 C 1.38813 * 120.00405 * 179.97438 * 13 12 10 16 16 N 1.31614 * 119.99726 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00207 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47220 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46843 * 120.00720 * 17 15 13 20 20 H 1.48508 * 109.47046 * 240.00442 * 17 15 13 21 21 C 1.46927 * 120.63486 * 174.99815 * 6 4 2 22 22 S 1.81397 * 109.46973 * 240.00032 * 2 1 3 23 23 C 1.81404 * 101.92079 * 60.00324 * 22 2 1 24 24 O 1.42104 * 108.57830 * 174.48519 * 22 2 1 25 25 O 1.42099 * 108.57956 * 305.51527 * 22 2 1 26 26 H 1.09006 * 109.46707 * 289.37019 * 1 2 3 27 27 H 1.09006 * 109.47161 * 49.36426 * 1 2 3 28 28 H 1.08997 * 109.47325 * 169.37123 * 1 2 3 29 29 H 1.08998 * 109.47436 * 190.19378 * 3 2 1 30 30 H 1.09000 * 109.47219 * 310.20216 * 3 2 1 31 31 H 1.09003 * 109.46974 * 70.19714 * 3 2 1 32 32 H 1.09004 * 109.58799 * 246.20667 * 7 6 4 33 33 H 1.08996 * 109.58499 * 6.62687 * 7 6 4 34 34 H 1.08998 * 109.50964 * 294.69836 * 8 7 6 35 35 H 1.08998 * 109.48283 * 174.60027 * 8 7 6 36 36 H 1.08995 * 109.45728 * 178.60162 * 9 8 7 37 37 H 1.08995 * 109.46024 * 58.62579 * 9 8 7 38 38 H 0.96996 * 120.00420 * 264.99911 * 12 10 9 39 39 H 0.97006 * 120.00332 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.58902 * 113.79826 * 21 6 4 41 41 H 1.09007 * 109.58364 * 353.36757 * 21 6 4 42 42 H 1.08994 * 109.47208 * 59.99745 * 23 22 2 43 43 H 1.08996 * 109.47329 * 180.02562 * 23 22 2 44 44 H 1.09008 * 109.46907 * 299.99584 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7559 -1.6774 1.1194 6 7 1.6775 -0.2713 2.4542 7 6 0.8929 0.9613 2.6088 8 6 -0.3484 0.6528 3.4519 9 6 0.0835 0.0130 4.7734 10 6 0.8138 -1.3018 4.4905 11 1 0.1557 -1.9718 3.9374 12 7 1.1985 -1.9296 5.7570 13 6 0.3055 -2.7224 6.4272 14 1 -0.6826 -2.8845 6.0223 15 6 0.6700 -3.3178 7.6270 16 7 1.8739 -3.1199 8.1207 17 14 -0.5485 -4.3987 8.5415 18 1 -1.8230 -4.4600 7.7820 19 1 0.0110 -5.7673 8.6803 20 1 -0.8017 -3.8285 9.8892 21 6 2.0683 -1.0158 3.6591 22 16 2.1346 -0.8551 -1.4811 23 6 1.4229 0.1516 -2.8118 24 8 3.5496 -0.7330 -1.5285 25 8 1.5478 -2.1484 -1.5285 26 1 -0.3633 0.3409 0.9696 27 1 -0.3634 0.6693 -0.7799 28 1 -0.3634 -1.0100 -0.1895 29 1 3.1147 1.4479 -0.1819 30 1 1.5358 2.0062 -0.7849 31 1 1.8329 1.9010 0.9669 32 1 1.4964 1.7182 3.1099 33 1 0.5872 1.3253 1.6280 34 1 -0.9954 -0.0358 2.9087 35 1 -0.8889 1.5773 3.6548 36 1 -0.7963 -0.1847 5.3857 37 1 0.7505 0.6919 5.3046 38 1 2.0857 -1.7838 6.1209 39 1 2.1286 -3.5357 8.9593 40 1 2.7676 -0.4201 4.2459 41 1 2.5381 -1.9563 3.3712 42 1 1.7893 1.1747 -2.7291 43 1 1.7151 -0.2625 -3.7767 44 1 0.3359 0.1471 -2.7291 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000369348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:57 Heat of formation + Delta-G solvation = -102.079834 kcal Electronic energy + Delta-G solvation = -26505.961373 eV Core-core repulsion = 22778.800085 eV Total energy + Delta-G solvation = -3727.161288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.87435 -38.93017 -38.08587 -37.14950 -36.93558 -35.75650 -33.69798 -32.84446 -30.46795 -29.88333 -28.45380 -27.06527 -25.88391 -24.24770 -23.40720 -22.04703 -20.68512 -19.56016 -19.22639 -18.19067 -18.04480 -17.13376 -16.95990 -16.76158 -16.34440 -16.30554 -15.77883 -15.52055 -15.33226 -14.92202 -14.78556 -14.52743 -14.23973 -14.03406 -13.94161 -13.59659 -13.45505 -13.24608 -13.17375 -13.07504 -12.96782 -12.87332 -12.86239 -12.42870 -12.32116 -12.20485 -12.10891 -11.95602 -11.86271 -11.76017 -11.65033 -11.38590 -10.95987 -10.76714 -9.83513 -9.07601 -7.99124 -5.29195 -1.06020 1.27634 1.43835 1.45982 1.55261 1.67230 1.77177 2.52596 2.74514 3.00158 3.20592 3.34354 3.57485 3.62320 3.74764 3.95065 3.98408 4.05205 4.12437 4.20102 4.26519 4.30526 4.49593 4.52321 4.56022 4.63898 4.71613 4.73023 4.75736 4.79918 4.96924 5.00248 5.11104 5.19209 5.20969 5.33511 5.39550 5.45783 5.56802 6.18353 6.22480 6.81823 7.28186 8.00290 8.24494 9.24446 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.003358 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.729367 B = 8336.082499 C = 8709.143875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.559 4.559 3 C -0.164 4.164 4 C 0.531 3.469 5 O -0.594 6.594 6 N -0.585 5.585 7 C 0.074 3.926 8 C -0.128 4.128 9 C -0.128 4.128 10 C 0.167 3.833 11 H 0.031 0.969 12 N -0.737 5.737 13 C -0.240 4.240 14 H 0.075 0.925 15 C -0.075 4.075 16 N -0.969 5.969 17 Si 0.974 3.026 18 H -0.265 1.265 19 H -0.296 1.296 20 H -0.289 1.289 21 C 0.114 3.886 22 S 2.414 3.586 23 C -0.620 4.620 24 O -0.981 6.981 25 O -0.985 6.985 26 H 0.105 0.895 27 H 0.145 0.855 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.143 0.857 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.150 0.850 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.373 0.627 39 H 0.252 0.748 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.173 0.827 43 H 0.146 0.854 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 20.005 -23.791 31.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.650 4.650 3 C -0.221 4.221 4 C 0.318 3.682 5 O -0.476 6.476 6 N -0.316 5.316 7 C -0.046 4.046 8 C -0.166 4.166 9 C -0.168 4.168 10 C 0.058 3.942 11 H 0.049 0.951 12 N -0.377 5.377 13 C -0.371 4.371 14 H 0.092 0.908 15 C -0.267 4.267 16 N -0.619 5.619 17 Si 0.803 3.197 18 H -0.190 1.190 19 H -0.224 1.224 20 H -0.216 1.216 21 C -0.011 4.011 22 S 2.599 3.401 23 C -0.775 4.775 24 O -0.978 6.978 25 O -0.982 6.982 26 H 0.123 0.877 27 H 0.163 0.837 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.167 0.833 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.205 0.795 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.191 0.809 43 H 0.164 0.836 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.826 18.637 -23.805 30.993 hybrid contribution 0.024 -0.951 1.628 1.886 sum -6.802 17.686 -22.177 29.169 Atomic orbital electron populations 1.22459 0.85129 1.05773 1.09016 1.30308 1.10218 1.11814 1.12701 1.22457 1.03068 0.87438 1.09156 1.20167 0.79556 0.83080 0.85356 1.90828 1.39537 1.30336 1.86870 1.47905 1.53332 1.26292 1.04061 1.22949 0.92573 0.84654 1.04412 1.21993 0.97286 1.02581 0.94757 1.22070 1.00041 0.96655 0.98055 1.20647 0.93674 0.93849 0.86058 0.95074 1.42505 1.15251 1.57572 1.22356 1.19584 0.95214 1.20625 1.01698 0.90752 1.25582 0.98641 1.02988 0.99484 1.69826 1.20470 1.49832 1.21802 0.85067 0.78513 0.77833 0.78299 1.18977 1.22367 1.21586 1.21698 0.97353 0.96475 0.85527 1.08060 0.75456 0.77184 0.79406 1.30120 1.16017 1.16491 1.14873 1.93500 1.30412 1.87525 1.86369 1.93507 1.79696 1.38628 1.86409 0.87681 0.83702 0.91560 0.91076 0.83878 0.87421 0.89064 0.83333 0.91308 0.86966 0.93291 0.92429 0.79533 0.93954 0.90863 0.92575 0.80915 0.83575 0.81163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 7.65 71.98 0.55 -0.99 16 2 C -0.56 -9.61 0.59 -11.54 -0.01 -9.62 16 3 C -0.16 -1.21 7.66 71.98 0.55 -0.66 16 4 C 0.53 16.50 6.50 87.66 0.57 17.07 16 5 O -0.59 -26.03 15.06 -0.16 0.00 -26.03 16 6 N -0.59 -16.47 2.97 -818.89 -2.43 -18.90 16 7 C 0.07 1.20 3.93 86.36 0.34 1.54 16 8 C -0.13 -2.39 5.74 30.67 0.18 -2.21 16 9 C -0.13 -4.01 5.47 30.62 0.17 -3.84 16 10 C 0.17 6.76 2.92 45.07 0.13 6.89 16 11 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 12 N -0.74 -38.23 5.13 -322.57 -1.65 -39.88 16 13 C -0.24 -13.58 9.93 84.03 0.83 -12.75 16 14 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 15 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 16 N -0.97 -60.49 13.06 21.65 0.28 -60.20 16 17 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 21 C 0.11 4.26 5.89 86.36 0.51 4.77 16 22 S 2.41 52.66 3.65 -56.49 -0.21 52.45 16 23 C -0.62 -2.20 9.78 113.37 1.11 -1.09 16 24 O -0.98 -30.75 17.49 -125.30 -2.19 -32.94 16 25 O -0.99 -32.04 17.55 -126.21 -2.22 -34.25 16 26 H 0.10 0.89 3.88 -2.38 -0.01 0.88 16 27 H 0.14 -0.47 7.03 -2.38 -0.02 -0.48 16 28 H 0.07 0.93 7.74 -2.39 -0.02 0.91 16 29 H 0.07 0.79 7.75 -2.39 -0.02 0.77 16 30 H 0.14 -0.65 7.00 -2.39 -0.02 -0.66 16 31 H 0.11 0.60 4.74 -2.39 -0.01 0.59 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.15 1.12 2.83 -2.39 -0.01 1.11 16 34 H 0.07 1.30 7.43 -2.39 -0.02 1.28 16 35 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.37 20.78 7.80 -92.71 -0.72 20.05 16 39 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 40 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.06 2.53 7.04 -2.38 -0.02 2.52 16 42 H 0.17 -0.67 7.14 -2.39 -0.02 -0.69 16 43 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.17 -0.55 7.16 -2.39 -0.02 -0.57 16 Total: -1.00 -98.37 347.95 -0.69 -99.05 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.30 Total: 16.45 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 5.40 Total: -4.79 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -3.80 Total: -118.99 kcal Atomic # 8 Polarization: -88.82 SS G_CDS: -4.41 Total: -93.23 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Atomic # 16 Polarization: 52.66 SS G_CDS: -0.21 Total: 52.45 kcal Total: -98.37 -0.69 -99.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000369348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.026 kcal (2) G-P(sol) polarization free energy of solvation -98.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds