Wall clock time and date at job start Tue Mar 31 2020 04:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08998 * 109.49858 * 55.00044 * 3 2 1 5 5 C 1.53192 * 109.50187 * 294.93259 * 3 2 1 6 6 N 1.46924 * 108.77471 * 185.41682 * 5 3 2 7 7 C 1.34779 * 120.62844 * 233.62852 * 6 5 3 8 8 O 1.21290 * 120.00086 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.00265 * 180.02562 * 7 6 5 10 10 S 1.81401 * 109.47593 * 180.02562 * 9 7 6 11 11 C 1.81399 * 101.92106 * 179.97438 * 10 9 7 12 12 O 1.42099 * 108.57727 * 294.48774 * 10 9 7 13 13 O 1.42100 * 108.57468 * 65.51183 * 10 9 7 14 14 C 1.46923 * 118.74045 * 53.61053 * 6 5 3 15 15 C 1.53185 * 108.77701 * 306.38845 * 14 6 5 16 16 C 1.53042 * 109.33855 * 54.61833 * 15 14 6 17 17 H 1.08997 * 109.42969 * 58.68909 * 16 15 14 18 18 N 1.46504 * 109.48748 * 178.64521 * 16 15 14 19 19 C 1.36936 * 120.00146 * 275.08814 * 18 16 15 20 20 H 1.07996 * 119.99809 * 359.97438 * 19 18 16 21 21 C 1.38810 * 119.99872 * 179.97438 * 19 18 16 22 22 N 1.31614 * 120.00073 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99887 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47227 * 59.99784 * 23 21 19 25 25 H 1.48492 * 109.47471 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47012 * 300.00088 * 23 21 19 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 31 31 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 32 32 H 1.09000 * 109.58771 * 305.20371 * 5 3 2 33 33 H 1.08997 * 109.58432 * 65.48452 * 5 3 2 34 34 H 1.09005 * 109.46995 * 300.00571 * 9 7 6 35 35 H 1.08999 * 109.47046 * 59.99827 * 9 7 6 36 36 H 1.08996 * 109.46930 * 60.00425 * 11 10 9 37 37 H 1.09005 * 109.46775 * 180.02562 * 11 10 9 38 38 H 1.08995 * 109.47299 * 299.99880 * 11 10 9 39 39 H 1.08994 * 109.58438 * 66.18042 * 14 6 5 40 40 H 1.09001 * 109.58248 * 186.60077 * 14 6 5 41 41 H 1.09000 * 109.50123 * 174.58412 * 15 14 6 42 42 H 1.08998 * 109.49937 * 294.68888 * 15 14 6 43 43 H 0.97003 * 119.99543 * 95.08429 * 18 16 15 44 44 H 0.96997 * 120.00063 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6055 1.9819 0.8417 5 6 1.6364 2.1276 -1.3095 6 7 2.2429 3.4652 -1.3498 7 6 1.4831 4.5575 -1.5646 8 8 0.2866 4.4417 -1.7263 9 6 2.1200 5.9226 -1.6037 10 16 0.8448 7.1765 -1.9077 11 6 1.8182 8.7072 -1.9134 12 8 0.3115 6.9735 -3.2091 13 8 -0.0365 7.2051 -0.7934 14 6 3.6933 3.5895 -1.1512 15 6 4.0739 2.8882 0.1565 16 6 3.5653 1.4451 0.1242 17 1 4.0001 0.9265 -0.7303 18 7 3.9556 0.7616 1.3598 19 6 5.1939 0.1858 1.4620 20 1 5.8825 0.2353 0.6316 21 6 5.5638 -0.4613 2.6330 22 7 4.7243 -0.5220 3.6448 23 14 7.2527 -1.2473 2.7722 24 1 8.2985 -0.2088 2.5904 25 1 7.4001 -1.8697 4.1123 26 1 7.4018 -2.2888 1.7242 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.9931 1.5390 -2.1548 33 1 0.5510 2.2146 -1.3569 34 1 2.6068 6.1239 -0.6494 35 1 2.8602 5.9554 -2.4032 36 1 2.5671 8.6585 -2.7039 37 1 1.1582 9.5567 -2.0895 38 1 2.3139 8.8262 -0.9500 39 1 4.2176 3.1203 -1.9835 40 1 3.9651 4.6435 -1.0930 41 1 5.1582 2.8894 0.2678 42 1 3.6207 3.4143 0.9967 43 1 3.3369 0.7169 2.1055 44 1 4.9829 -0.9739 4.4632 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037807046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:27 Heat of formation + Delta-G solvation = -94.679034 kcal Electronic energy + Delta-G solvation = -25790.885888 eV Core-core repulsion = 22064.045523 eV Total energy + Delta-G solvation = -3726.840365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.34914 -38.00692 -37.15553 -36.15659 -34.92263 -33.86727 -31.84262 -31.16528 -29.82643 -29.59182 -28.33034 -25.04743 -23.92423 -22.90237 -20.93262 -20.25017 -19.36516 -18.88610 -17.72650 -17.15136 -16.81856 -16.53254 -16.16942 -15.49883 -15.37915 -14.98326 -14.23278 -13.97184 -13.77157 -13.67609 -13.62236 -13.53052 -13.36514 -13.20427 -12.92259 -12.62409 -12.21308 -12.17423 -12.14024 -11.97057 -11.71485 -11.36510 -11.34381 -11.07549 -10.97739 -10.90277 -10.74597 -10.45335 -10.28548 -10.20496 -10.14402 -9.78375 -9.66658 -8.96420 -8.65780 -7.03282 -5.83115 -3.12457 -0.38500 2.33015 2.45693 2.76466 3.37977 3.42991 3.44360 3.50666 3.71882 4.11178 4.32889 4.40497 4.51906 4.73142 4.76466 4.92232 5.14325 5.15757 5.23618 5.23835 5.37696 5.46109 5.54632 5.61314 5.63760 5.84212 5.92573 6.05894 6.09823 6.21807 6.28587 6.31887 6.40838 6.44917 6.60389 6.74715 6.90220 6.97300 7.24511 7.61978 7.87014 8.34803 9.46323 10.03136 10.38051 11.39084 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019857 B = 0.003217 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.759906 B = 8700.806670 C = 9547.073963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.116 3.884 6 N -0.593 5.593 7 C 0.541 3.459 8 O -0.538 6.538 9 C -0.659 4.659 10 S 2.456 3.544 11 C -0.663 4.663 12 O -0.924 6.924 13 O -0.921 6.921 14 C 0.102 3.898 15 C -0.154 4.154 16 C 0.183 3.817 17 H 0.049 0.951 18 N -0.720 5.720 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.010 4.010 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.385 0.615 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 15.226 -12.141 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.006 4.006 6 N -0.325 5.325 7 C 0.327 3.673 8 O -0.416 6.416 9 C -0.786 4.786 10 S 2.632 3.368 11 C -0.812 4.812 12 O -0.921 6.921 13 O -0.918 6.918 14 C -0.021 4.021 15 C -0.195 4.195 16 C 0.072 3.928 17 H 0.067 0.933 18 N -0.360 5.360 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.178 0.822 35 H 0.176 0.824 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.219 0.781 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.309 14.925 -12.336 19.836 hybrid contribution 2.073 -0.240 0.635 2.181 sum -2.236 14.684 -11.701 18.909 Atomic orbital electron populations 1.21855 0.96698 1.01138 1.01426 1.21449 0.94474 0.95478 1.03534 1.21807 0.97678 0.96478 0.96633 0.91000 1.21879 0.99771 0.80760 0.98187 1.48027 1.08695 1.06590 1.69178 1.19059 0.86490 0.84565 0.77204 1.90841 1.13956 1.86069 1.50744 1.30887 1.21670 1.12205 1.13856 1.07155 0.76642 0.77271 0.75724 1.30401 1.16661 1.22547 1.11629 1.93589 1.74600 1.84374 1.39525 1.93603 1.58836 1.85496 1.53858 1.21986 0.79025 1.01357 0.99731 1.22722 1.02383 0.99515 0.94908 1.20186 0.90768 0.90450 0.91363 0.93333 1.42400 1.16485 1.64417 1.12684 1.19154 0.91798 1.27714 0.98614 0.91298 1.24729 0.98129 1.01410 0.96417 1.69643 1.35281 1.48205 1.04737 0.86303 0.84077 0.79185 0.76787 1.21342 1.21732 1.21283 0.93094 0.92895 0.93157 0.89704 0.92409 0.91181 0.88692 0.82168 0.82366 0.85273 0.84967 0.85166 0.90963 0.90343 0.90329 0.92024 0.78131 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.16 0.36 -1.78 16 2 C -0.11 -1.76 5.31 -26.73 -0.14 -1.91 16 3 C -0.11 -1.68 1.92 -90.50 -0.17 -1.86 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 5 C 0.12 1.64 5.32 -3.71 -0.02 1.63 16 6 N -0.59 -7.84 2.97 -172.78 -0.51 -8.36 16 7 C 0.54 7.40 7.72 -10.99 -0.08 7.31 16 8 O -0.54 -9.43 15.04 2.54 0.04 -9.39 16 9 C -0.66 -5.21 4.64 36.00 0.17 -5.05 16 10 S 2.46 22.73 4.60 -107.50 -0.49 22.24 16 11 C -0.66 -2.56 10.62 101.05 1.07 -1.48 16 12 O -0.92 -12.26 17.95 -59.53 -1.07 -13.33 16 13 O -0.92 -12.73 17.95 -59.52 -1.07 -13.80 16 14 C 0.10 1.15 6.34 -3.72 -0.02 1.13 16 15 C -0.15 -2.34 5.66 -26.61 -0.15 -2.49 16 16 C 0.18 3.26 2.19 -67.88 -0.15 3.11 16 17 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 18 N -0.72 -16.58 4.33 -53.38 -0.23 -16.81 16 19 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 20 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -27.04 13.06 55.49 0.72 -26.31 16 23 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 30 H 0.08 1.61 7.22 -51.93 -0.37 1.23 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.42 5.73 -51.93 -0.30 1.12 16 34 H 0.16 0.79 7.69 -51.92 -0.40 0.39 16 35 H 0.16 0.63 7.94 -51.93 -0.41 0.22 16 36 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.38 9.66 7.51 -40.82 -0.31 9.35 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -37.26 364.09 -8.60 -45.86 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.06 Total: 6.13 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 0.61 Total: -8.17 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.02 Total: -51.48 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -2.10 Total: -36.53 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 22.73 SS G_CDS: -0.49 Total: 22.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.26 -8.60 -45.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037807046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.818 kcal (2) G-P(sol) polarization free energy of solvation -37.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds