Wall clock time and date at job start Tue Mar 31 2020 04:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08998 * 109.49858 * 55.00044 * 3 2 1 5 5 C 1.53192 * 109.50187 * 294.93259 * 3 2 1 6 6 N 1.46924 * 108.77471 * 185.41682 * 5 3 2 7 7 C 1.34779 * 120.62844 * 233.62852 * 6 5 3 8 8 O 1.21290 * 120.00086 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.00265 * 180.02562 * 7 6 5 10 10 S 1.81401 * 109.47593 * 180.02562 * 9 7 6 11 11 C 1.81399 * 101.92106 * 179.97438 * 10 9 7 12 12 O 1.42099 * 108.57727 * 294.48774 * 10 9 7 13 13 O 1.42100 * 108.57468 * 65.51183 * 10 9 7 14 14 C 1.46923 * 118.74045 * 53.61053 * 6 5 3 15 15 C 1.53185 * 108.77701 * 306.38845 * 14 6 5 16 16 C 1.53042 * 109.33855 * 54.61833 * 15 14 6 17 17 H 1.08997 * 109.42969 * 58.68909 * 16 15 14 18 18 N 1.46504 * 109.48748 * 178.64521 * 16 15 14 19 19 C 1.36936 * 120.00146 * 275.08814 * 18 16 15 20 20 H 1.07996 * 119.99809 * 359.97438 * 19 18 16 21 21 C 1.38810 * 119.99872 * 179.97438 * 19 18 16 22 22 N 1.31614 * 120.00073 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99887 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47227 * 59.99784 * 23 21 19 25 25 H 1.48492 * 109.47471 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47012 * 300.00088 * 23 21 19 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 31 31 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 32 32 H 1.09000 * 109.58771 * 305.20371 * 5 3 2 33 33 H 1.08997 * 109.58432 * 65.48452 * 5 3 2 34 34 H 1.09005 * 109.46995 * 300.00571 * 9 7 6 35 35 H 1.08999 * 109.47046 * 59.99827 * 9 7 6 36 36 H 1.08996 * 109.46930 * 60.00425 * 11 10 9 37 37 H 1.09005 * 109.46775 * 180.02562 * 11 10 9 38 38 H 1.08995 * 109.47299 * 299.99880 * 11 10 9 39 39 H 1.08994 * 109.58438 * 66.18042 * 14 6 5 40 40 H 1.09001 * 109.58248 * 186.60077 * 14 6 5 41 41 H 1.09000 * 109.50123 * 174.58412 * 15 14 6 42 42 H 1.08998 * 109.49937 * 294.68888 * 15 14 6 43 43 H 0.97003 * 119.99543 * 95.08429 * 18 16 15 44 44 H 0.96997 * 120.00063 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6055 1.9819 0.8417 5 6 1.6364 2.1276 -1.3095 6 7 2.2429 3.4652 -1.3498 7 6 1.4831 4.5575 -1.5646 8 8 0.2866 4.4417 -1.7263 9 6 2.1200 5.9226 -1.6037 10 16 0.8448 7.1765 -1.9077 11 6 1.8182 8.7072 -1.9134 12 8 0.3115 6.9735 -3.2091 13 8 -0.0365 7.2051 -0.7934 14 6 3.6933 3.5895 -1.1512 15 6 4.0739 2.8882 0.1565 16 6 3.5653 1.4451 0.1242 17 1 4.0001 0.9265 -0.7303 18 7 3.9556 0.7616 1.3598 19 6 5.1939 0.1858 1.4620 20 1 5.8825 0.2353 0.6316 21 6 5.5638 -0.4613 2.6330 22 7 4.7243 -0.5220 3.6448 23 14 7.2527 -1.2473 2.7722 24 1 8.2985 -0.2088 2.5904 25 1 7.4001 -1.8697 4.1123 26 1 7.4018 -2.2888 1.7242 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.9931 1.5390 -2.1548 33 1 0.5510 2.2146 -1.3569 34 1 2.6068 6.1239 -0.6494 35 1 2.8602 5.9554 -2.4032 36 1 2.5671 8.6585 -2.7039 37 1 1.1582 9.5567 -2.0895 38 1 2.3139 8.8262 -0.9500 39 1 4.2176 3.1203 -1.9835 40 1 3.9651 4.6435 -1.0930 41 1 5.1582 2.8894 0.2678 42 1 3.6207 3.4143 0.9967 43 1 3.3369 0.7169 2.1055 44 1 4.9829 -0.9739 4.4632 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037807046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:26 Heat of formation + Delta-G solvation = -124.282691 kcal Electronic energy + Delta-G solvation = -25792.169599 eV Core-core repulsion = 22064.045523 eV Total energy + Delta-G solvation = -3728.124076 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.44440 -39.28211 -37.95855 -36.95801 -36.27947 -35.38162 -33.47484 -31.98906 -31.08599 -30.28398 -29.50652 -26.57508 -25.16138 -24.43185 -22.25847 -21.44485 -20.52729 -19.64853 -19.06397 -18.60267 -17.71677 -17.28327 -17.03251 -16.70771 -16.41360 -16.30189 -15.65239 -15.48921 -15.10526 -14.74386 -14.65491 -14.47135 -14.16073 -13.93553 -13.85191 -13.66457 -13.47278 -13.16592 -13.07224 -13.03462 -12.97526 -12.80378 -12.67992 -12.55341 -12.22222 -12.14767 -11.99784 -11.84843 -11.61220 -11.58499 -11.55112 -11.24109 -11.10133 -10.80132 -9.77716 -8.95106 -7.89589 -5.17311 -0.99787 1.35375 1.49742 1.51714 1.57615 1.82279 1.88238 2.59094 2.82129 3.14115 3.35430 3.44039 3.75000 3.77639 3.97454 3.98897 4.06865 4.16483 4.20663 4.33024 4.34657 4.35326 4.39393 4.46178 4.61806 4.74474 4.78509 4.82884 4.88192 4.99097 5.02913 5.03130 5.14340 5.24745 5.34982 5.44698 5.51869 5.57663 5.63935 6.22692 6.31438 6.86822 7.38051 8.14386 8.37348 9.33797 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019857 B = 0.003217 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.759906 B = 8700.806670 C = 9547.073963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.095 4.095 4 H 0.050 0.950 5 C 0.120 3.880 6 N -0.596 5.596 7 C 0.526 3.474 8 O -0.587 6.587 9 C -0.650 4.650 10 S 2.436 3.564 11 C -0.625 4.625 12 O -0.981 6.981 13 O -0.986 6.986 14 C 0.106 3.894 15 C -0.146 4.146 16 C 0.176 3.824 17 H 0.050 0.950 18 N -0.732 5.732 19 C -0.230 4.230 20 H 0.080 0.920 21 C -0.076 4.076 22 N -0.972 5.972 23 Si 0.967 3.033 24 H -0.276 1.276 25 H -0.303 1.303 26 H -0.280 1.280 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.198 0.802 35 H 0.209 0.791 36 H 0.165 0.835 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.370 0.630 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.346 17.585 -14.205 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.115 4.115 4 H 0.069 0.931 5 C -0.003 4.003 6 N -0.327 5.327 7 C 0.314 3.686 8 O -0.469 6.469 9 C -0.778 4.778 10 S 2.621 3.379 11 C -0.779 4.779 12 O -0.978 6.978 13 O -0.984 6.984 14 C -0.016 4.016 15 C -0.187 4.187 16 C 0.068 3.932 17 H 0.068 0.932 18 N -0.371 5.371 19 C -0.362 4.362 20 H 0.097 0.903 21 C -0.268 4.268 22 N -0.623 5.623 23 Si 0.797 3.203 24 H -0.202 1.202 25 H -0.230 1.230 26 H -0.207 1.207 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.215 0.785 35 H 0.226 0.774 36 H 0.183 0.817 37 H 0.159 0.841 38 H 0.179 0.821 39 H 0.111 0.889 40 H 0.144 0.856 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.201 0.799 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.688 17.285 -14.462 22.600 hybrid contribution 1.276 -0.914 1.220 1.988 sum -0.412 16.371 -13.242 21.061 Atomic orbital electron populations 1.21792 0.95168 1.01908 1.01598 1.21356 0.95830 0.95292 1.02029 1.21649 0.96296 0.96399 0.97126 0.93105 1.21720 0.99410 0.81912 0.97280 1.48130 1.09557 1.06074 1.68908 1.20006 0.86100 0.86507 0.75982 1.90829 1.16386 1.87066 1.52652 1.30859 1.21698 1.07440 1.17769 1.07201 0.77708 0.79419 0.73582 1.30088 1.16154 1.16804 1.14877 1.93520 1.77167 1.85981 1.41163 1.93528 1.62702 1.86954 1.55176 1.22153 0.77694 1.04014 0.97752 1.22511 1.01718 0.97421 0.97081 1.20451 0.91927 0.91803 0.89016 0.93247 1.42593 1.15476 1.65096 1.13907 1.19564 0.92543 1.25809 0.98300 0.90255 1.25480 1.01523 1.03218 0.96600 1.69815 1.37148 1.50141 1.05169 0.85297 0.80481 0.78466 0.76024 1.20192 1.22972 1.20657 0.92036 0.93753 0.91918 0.93374 0.91553 0.89515 0.89831 0.78470 0.77392 0.81665 0.84079 0.82146 0.88891 0.85608 0.90792 0.93384 0.79888 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.16 9.67 71.98 0.70 -3.47 16 2 C -0.11 -3.48 5.31 30.60 0.16 -3.31 16 3 C -0.09 -3.03 1.92 -10.71 -0.02 -3.06 16 4 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 5 C 0.12 3.29 5.32 86.36 0.46 3.75 16 6 N -0.60 -14.33 2.97 -818.93 -2.43 -16.76 16 7 C 0.53 13.40 7.72 87.65 0.68 14.07 16 8 O -0.59 -20.94 15.04 -0.19 0.00 -20.94 16 9 C -0.65 -7.58 4.64 71.23 0.33 -7.25 16 10 S 2.44 41.03 4.60 -56.49 -0.26 40.77 16 11 C -0.63 -1.52 10.62 113.37 1.20 -0.32 16 12 O -0.98 -25.97 17.95 -125.74 -2.26 -28.23 16 13 O -0.99 -27.80 17.95 -125.75 -2.26 -30.06 16 14 C 0.11 1.93 6.34 86.36 0.55 2.48 16 15 C -0.15 -4.14 5.66 30.67 0.17 -3.96 16 16 C 0.18 6.19 2.19 45.02 0.10 6.29 16 17 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 18 N -0.73 -34.29 4.33 -322.80 -1.40 -35.69 16 19 C -0.23 -11.91 9.93 84.03 0.83 -11.08 16 20 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 21 C -0.08 -4.20 5.50 84.86 0.47 -3.73 16 22 N -0.97 -58.20 13.06 21.65 0.28 -57.91 16 23 Si 0.97 44.44 29.55 68.60 2.03 46.46 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.61 6.70 -2.39 -0.02 1.60 16 30 H 0.05 1.92 7.22 -2.39 -0.02 1.90 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 2.52 5.73 -2.39 -0.01 2.51 16 34 H 0.20 0.82 7.69 -2.39 -0.02 0.80 16 35 H 0.21 0.26 7.94 -2.39 -0.02 0.24 16 36 H 0.17 -0.63 8.14 -2.39 -0.02 -0.65 16 37 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.16 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.13 1.16 5.93 -2.39 -0.01 1.15 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 43 H 0.37 19.37 7.51 -92.71 -0.70 18.68 16 44 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -89.05 364.09 -0.37 -89.42 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.30 Total: 22.52 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 5.63 Total: -9.58 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -3.55 Total: -110.36 kcal Atomic # 8 Polarization: -74.72 SS G_CDS: -4.52 Total: -79.23 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 41.03 SS G_CDS: -0.26 Total: 40.77 kcal Total: -89.05 -0.37 -89.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037807046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.862 kcal (2) G-P(sol) polarization free energy of solvation -89.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds