Wall clock time and date at job start Tue Mar 31 2020 04:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47087 * 2 1 4 4 H 1.08997 * 109.52600 * 54.91749 * 3 2 1 5 5 C 1.52758 * 109.56215 * 294.96672 * 3 2 1 6 6 N 1.46927 * 109.00682 * 185.55500 * 5 3 2 7 7 C 1.34784 * 120.62995 * 233.58186 * 6 5 3 8 8 O 1.21283 * 119.99649 * 359.72079 * 7 6 5 9 9 C 1.50694 * 119.99988 * 179.71961 * 7 6 5 10 10 S 1.81401 * 109.47154 * 180.02562 * 9 7 6 11 11 C 1.81400 * 101.92158 * 179.97438 * 10 9 7 12 12 O 1.42107 * 108.57454 * 294.48640 * 10 9 7 13 13 O 1.42099 * 108.58013 * 65.51087 * 10 9 7 14 14 C 1.46923 * 118.73985 * 53.30967 * 6 5 3 15 15 C 1.53194 * 108.77322 * 306.63925 * 14 6 5 16 16 C 1.53039 * 109.49748 * 175.00127 * 3 2 1 17 17 H 1.08998 * 109.44648 * 301.33084 * 16 3 2 18 18 N 1.46494 * 109.46028 * 61.29285 * 16 3 2 19 19 C 1.36935 * 120.00034 * 205.06717 * 18 16 3 20 20 H 1.08000 * 120.00354 * 0.02562 * 19 18 16 21 21 C 1.38819 * 119.99981 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99952 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47514 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46850 * 120.00430 * 23 21 19 26 26 H 1.48499 * 109.47079 * 239.99591 * 23 21 19 27 27 H 1.09006 * 109.47402 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47231 * 299.99719 * 1 2 3 29 29 H 1.09001 * 109.47507 * 59.99939 * 1 2 3 30 30 H 1.08997 * 109.46861 * 239.99787 * 2 1 3 31 31 H 1.09001 * 109.46665 * 119.99694 * 2 1 3 32 32 H 1.09003 * 109.51509 * 65.66887 * 5 3 2 33 33 H 1.09007 * 109.43462 * 305.38846 * 5 3 2 34 34 H 1.08998 * 109.47224 * 299.99701 * 9 7 6 35 35 H 1.09002 * 109.47054 * 60.00213 * 9 7 6 36 36 H 1.08999 * 109.46874 * 60.00565 * 11 10 9 37 37 H 1.09002 * 109.46884 * 179.97438 * 11 10 9 38 38 H 1.08993 * 109.46909 * 299.99652 * 11 10 9 39 39 H 1.08998 * 109.59009 * 66.42846 * 14 6 5 40 40 H 1.09003 * 109.58381 * 186.71554 * 14 6 5 41 41 H 1.08996 * 109.49478 * 174.58662 * 15 14 6 42 42 H 1.08997 * 109.50001 * 294.65599 * 15 14 6 43 43 H 0.96999 * 120.00224 * 25.06844 * 18 16 3 44 44 H 0.96997 * 119.99663 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 0.8407 5 6 1.6376 2.1272 -1.3049 6 7 2.2451 3.4643 -1.3507 7 6 1.4856 4.5565 -1.5673 8 8 0.2895 4.4405 -1.7317 9 6 2.1225 5.9217 -1.6052 10 16 0.8478 7.1753 -1.9122 11 6 1.8211 8.7062 -1.9160 12 8 0.3175 6.9721 -3.2148 13 8 -0.0360 7.2042 -0.7999 14 6 3.6952 3.5887 -1.1499 15 6 4.0736 2.8882 0.1588 16 6 3.5652 1.4450 0.1257 17 1 3.8543 0.9369 1.0456 18 7 4.1506 0.7475 -1.0218 19 6 5.3878 0.1706 -0.9140 20 1 5.9319 0.2295 0.0171 21 6 5.9428 -0.4900 -2.0015 22 7 5.2800 -0.5613 -3.1364 23 14 7.6309 -1.2763 -1.8546 24 1 8.1621 -1.0562 -0.4855 25 1 7.5220 -2.7343 -2.1144 26 1 8.5502 -0.6640 -2.8471 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 0.5522 2.2172 -1.3493 33 1 1.9921 1.5358 -2.1491 34 1 2.6071 6.1232 -0.6499 35 1 2.8644 5.9544 -2.4031 36 1 2.5717 8.6575 -2.7049 37 1 1.1616 9.5555 -2.0945 38 1 2.3145 8.8253 -0.9515 39 1 4.2209 3.1188 -1.9812 40 1 3.9672 4.6428 -1.0945 41 1 5.1577 2.8894 0.2718 42 1 3.6196 3.4151 0.9980 43 1 3.6619 0.6942 -1.8580 44 1 5.6680 -1.0226 -3.8964 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037807048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:29 Heat of formation + Delta-G solvation = -121.166304 kcal Electronic energy + Delta-G solvation = -26183.913413 eV Core-core repulsion = 22455.924473 eV Total energy + Delta-G solvation = -3727.988939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.49449 -39.37169 -37.95200 -36.94973 -35.99796 -35.39746 -33.43088 -31.93084 -31.01696 -30.26001 -29.50466 -26.36816 -25.36369 -25.06180 -22.21501 -21.32801 -19.89725 -19.60394 -19.23567 -18.56218 -17.69558 -17.30303 -16.95742 -16.64347 -16.41339 -16.21168 -15.85301 -15.55274 -15.07393 -14.79625 -14.69648 -14.41231 -14.14008 -13.92265 -13.85381 -13.67220 -13.56419 -13.12061 -13.03246 -12.97358 -12.92865 -12.88152 -12.65936 -12.38193 -12.24589 -12.05020 -11.98163 -11.84795 -11.63946 -11.57165 -11.47069 -11.22183 -11.11228 -10.80945 -9.70179 -8.91268 -7.87753 -5.13904 -0.99308 1.36931 1.49409 1.51770 1.59669 1.83927 1.88418 2.60654 2.82778 3.14444 3.36414 3.46832 3.77662 3.84123 3.97620 4.01893 4.08218 4.16856 4.21652 4.34854 4.35501 4.36680 4.41800 4.45263 4.59864 4.68958 4.83792 4.87603 4.98319 5.02469 5.02986 5.16697 5.18941 5.22208 5.32036 5.38624 5.50370 5.61230 5.63433 6.28665 6.33943 6.87924 7.41762 8.17976 8.41224 9.35692 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.003718 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.705722 B = 7529.970227 C = 8471.012474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.093 4.093 4 H 0.085 0.915 5 C 0.118 3.882 6 N -0.590 5.590 7 C 0.525 3.475 8 O -0.589 6.589 9 C -0.650 4.650 10 S 2.439 3.561 11 C -0.624 4.624 12 O -0.985 6.985 13 O -0.980 6.980 14 C 0.109 3.891 15 C -0.144 4.144 16 C 0.170 3.830 17 H 0.048 0.952 18 N -0.725 5.725 19 C -0.223 4.223 20 H 0.077 0.923 21 C -0.072 4.072 22 N -0.969 5.969 23 Si 0.962 3.038 24 H -0.266 1.266 25 H -0.304 1.304 26 H -0.298 1.298 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.205 0.795 35 H 0.197 0.803 36 H 0.161 0.839 37 H 0.143 0.857 38 H 0.164 0.836 39 H 0.057 0.943 40 H 0.124 0.876 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.373 0.627 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 18.104 7.201 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.113 4.113 4 H 0.104 0.896 5 C -0.004 4.004 6 N -0.321 5.321 7 C 0.313 3.687 8 O -0.471 6.471 9 C -0.777 4.777 10 S 2.624 3.376 11 C -0.778 4.778 12 O -0.982 6.982 13 O -0.977 6.977 14 C -0.013 4.013 15 C -0.185 4.185 16 C 0.061 3.939 17 H 0.066 0.934 18 N -0.366 5.366 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.264 4.264 22 N -0.621 5.621 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.232 1.232 26 H -0.226 1.226 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.222 0.778 35 H 0.214 0.786 36 H 0.179 0.821 37 H 0.161 0.839 38 H 0.183 0.817 39 H 0.075 0.925 40 H 0.142 0.858 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.206 0.794 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.792 17.813 7.095 19.545 hybrid contribution 1.566 -1.126 -0.653 2.036 sum -2.227 16.686 6.442 18.025 Atomic orbital electron populations 1.21801 0.94997 1.01929 1.01784 1.21339 0.95873 0.95287 1.01839 1.21599 0.96286 0.96391 0.97034 0.89633 1.21519 0.98686 0.82093 0.98143 1.48067 1.09398 1.05963 1.68635 1.20015 0.86107 0.86491 0.76080 1.90810 1.16377 1.87124 1.52808 1.30868 1.21659 1.07510 1.17709 1.07152 0.77600 0.79294 0.73588 1.30081 1.16104 1.16700 1.14935 1.93524 1.77330 1.85985 1.41402 1.93517 1.62251 1.86903 1.55049 1.21933 0.77563 1.03033 0.98732 1.22420 1.01853 0.97379 0.96836 1.20478 0.90637 0.92020 0.90774 0.93374 1.42603 1.18336 1.64313 1.11355 1.19607 0.94213 1.25026 0.96693 0.90510 1.25361 1.01711 1.03238 0.96122 1.69812 1.39556 1.49876 1.02858 0.85232 0.80800 0.77240 0.77429 1.19012 1.23154 1.22581 0.92119 0.91838 0.93457 0.93711 0.91721 0.89911 0.93055 0.77773 0.78608 0.82110 0.83914 0.81739 0.92469 0.85843 0.90787 0.90134 0.79397 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.67 71.98 0.70 -3.31 16 2 C -0.11 -3.34 5.19 30.59 0.16 -3.19 16 3 C -0.09 -2.91 2.12 -10.86 -0.02 -2.93 16 4 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 5 C 0.12 4.02 5.01 86.22 0.43 4.45 16 6 N -0.59 -17.54 2.98 -819.72 -2.44 -19.98 16 7 C 0.52 15.41 7.72 87.65 0.68 16.09 16 8 O -0.59 -22.86 15.04 -0.17 0.00 -22.86 16 9 C -0.65 -9.64 4.64 71.23 0.33 -9.31 16 10 S 2.44 45.39 4.60 -56.49 -0.26 45.13 16 11 C -0.62 -2.36 10.62 113.37 1.20 -1.16 16 12 O -0.99 -29.12 17.95 -125.74 -2.26 -31.38 16 13 O -0.98 -27.57 17.95 -125.76 -2.26 -29.83 16 14 C 0.11 2.82 6.09 86.36 0.53 3.34 16 15 C -0.14 -3.92 5.78 30.67 0.18 -3.74 16 16 C 0.17 5.80 2.53 45.02 0.11 5.92 16 17 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 18 N -0.72 -32.18 3.72 -322.82 -1.20 -33.38 16 19 C -0.22 -11.20 9.93 84.04 0.83 -10.36 16 20 H 0.08 3.69 7.83 -2.91 -0.02 3.67 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.97 -56.66 13.06 21.65 0.28 -56.38 16 23 Si 0.96 43.99 29.55 68.60 2.03 46.02 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 26 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 27 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.05 1.34 6.70 -2.39 -0.02 1.33 16 30 H 0.04 1.71 7.70 -2.39 -0.02 1.69 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.08 2.92 5.72 -2.39 -0.01 2.91 16 33 H 0.05 2.01 6.64 -2.38 -0.02 2.00 16 34 H 0.21 1.03 7.69 -2.39 -0.02 1.02 16 35 H 0.20 1.42 7.94 -2.39 -0.02 1.40 16 36 H 0.16 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.16 -0.37 8.14 -2.39 -0.02 -0.39 16 39 H 0.06 1.89 7.74 -2.39 -0.02 1.87 16 40 H 0.12 1.87 5.93 -2.39 -0.01 1.86 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.37 18.39 5.95 -92.71 -0.55 17.84 16 44 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -85.77 360.47 -0.07 -85.84 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.45 Total: 24.44 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 5.59 Total: -7.61 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -3.36 Total: -109.75 kcal Atomic # 8 Polarization: -79.55 SS G_CDS: -4.52 Total: -84.07 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 45.39 SS G_CDS: -0.26 Total: 45.13 kcal Total: -85.77 -0.07 -85.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037807048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.330 kcal (2) G-P(sol) polarization free energy of solvation -85.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds