Wall clock time and date at job start Tue Mar 31 2020 04:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46745 * 2 1 4 4 H 1.08996 * 109.49755 * 304.93278 * 3 2 1 5 5 C 1.53196 * 109.49721 * 64.99661 * 3 2 1 6 6 N 1.46929 * 108.77486 * 174.61346 * 5 3 2 7 7 C 1.34779 * 120.62811 * 126.39016 * 6 5 3 8 8 O 1.21284 * 119.99950 * 0.02562 * 7 6 5 9 9 C 1.50692 * 120.00005 * 180.02562 * 7 6 5 10 10 S 1.81396 * 109.47330 * 180.02562 * 9 7 6 11 11 C 1.81395 * 101.92319 * 179.97438 * 10 9 7 12 12 O 1.42099 * 108.58096 * 294.48779 * 10 9 7 13 13 O 1.42109 * 108.57711 * 65.51112 * 10 9 7 14 14 C 1.46918 * 118.73922 * 306.39780 * 6 5 3 15 15 C 1.53194 * 108.78089 * 53.60697 * 14 6 5 16 16 C 1.53037 * 109.52220 * 184.85013 * 3 2 1 17 17 H 1.09004 * 109.46115 * 298.69207 * 16 3 2 18 18 N 1.46498 * 109.46005 * 58.66275 * 16 3 2 19 19 C 1.36937 * 120.00120 * 205.00408 * 18 16 3 20 20 H 1.08003 * 119.99775 * 359.97438 * 19 18 16 21 21 C 1.38807 * 120.00415 * 180.02562 * 19 18 16 22 22 N 1.31628 * 119.99890 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00457 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47385 * 89.99362 * 23 21 19 25 25 H 1.48502 * 109.46846 * 209.99920 * 23 21 19 26 26 H 1.48501 * 109.46638 * 329.99251 * 23 21 19 27 27 H 1.09005 * 109.47003 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47568 * 300.00000 * 1 2 3 29 29 H 1.09005 * 109.47143 * 60.00668 * 1 2 3 30 30 H 1.08993 * 109.47568 * 240.00000 * 2 1 3 31 31 H 1.09001 * 109.46472 * 119.99584 * 2 1 3 32 32 H 1.08998 * 109.58804 * 294.40784 * 5 3 2 33 33 H 1.09003 * 109.58394 * 54.83361 * 5 3 2 34 34 H 1.09004 * 109.47107 * 299.99885 * 9 7 6 35 35 H 1.08994 * 109.47315 * 60.00032 * 9 7 6 36 36 H 1.09002 * 109.47153 * 60.00573 * 11 10 9 37 37 H 1.09004 * 109.47342 * 179.97438 * 11 10 9 38 38 H 1.09001 * 109.47632 * 300.00023 * 11 10 9 39 39 H 1.09008 * 109.58859 * 293.81127 * 14 6 5 40 40 H 1.09000 * 109.70348 * 173.46523 * 14 6 5 41 41 H 1.09003 * 109.49900 * 185.41596 * 15 14 6 42 42 H 1.08996 * 109.52526 * 65.32701 * 15 14 6 43 43 H 0.96997 * 120.00058 * 24.99400 * 18 16 3 44 44 H 0.96995 * 120.00251 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6348 2.1281 1.3088 6 7 2.2407 3.4660 1.3490 7 6 1.4802 4.5580 1.5629 8 8 0.2839 4.4416 1.7249 9 6 2.1163 5.9235 1.6009 10 16 0.8406 7.1767 1.9054 11 6 1.8132 8.7079 1.9111 12 8 -0.0418 7.2044 0.7919 13 8 0.3085 6.9740 3.2074 14 6 3.6912 3.5909 1.1516 15 6 4.0732 2.8891 -0.1555 16 6 3.5654 1.4457 -0.1220 17 1 3.9992 0.9279 0.7335 18 7 3.9578 0.7619 -1.3567 19 6 5.1964 0.1866 -1.4569 20 1 5.8842 0.2374 -0.6258 21 6 5.5684 -0.4609 -2.6270 22 7 4.7303 -0.5223 -3.6402 23 14 7.2583 -1.2450 -2.7640 24 1 7.1894 -2.6539 -2.2998 25 1 7.7063 -1.2114 -4.1794 26 1 8.2226 -0.4929 -1.9216 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 0.5494 2.2168 1.3541 33 1 1.9911 1.5401 2.1547 34 1 2.8565 5.9575 2.4003 35 1 2.6029 6.1244 0.6465 36 1 2.3085 8.8273 0.9475 37 1 1.1529 9.5571 2.0875 38 1 2.5624 8.6595 2.7013 39 1 4.2151 3.1223 1.9847 40 1 3.9649 4.6444 1.0941 41 1 5.1576 2.8907 -0.2658 42 1 3.6210 3.4143 -0.9967 43 1 3.3401 0.7165 -2.1032 44 1 4.9901 -0.9751 -4.4577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037807050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:33 Heat of formation + Delta-G solvation = -94.783670 kcal Electronic energy + Delta-G solvation = -25791.023793 eV Core-core repulsion = 22064.178891 eV Total energy + Delta-G solvation = -3726.844903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.35072 -38.00885 -37.15457 -36.15593 -34.92296 -33.86911 -31.84275 -31.16591 -29.82636 -29.59194 -28.33106 -25.04824 -23.92543 -22.90419 -20.93450 -20.25071 -19.36608 -18.88665 -17.72735 -17.15324 -16.81918 -16.53307 -16.16955 -15.49899 -15.37986 -14.98531 -14.23309 -13.97063 -13.76860 -13.67658 -13.62305 -13.53144 -13.36767 -13.20428 -12.92639 -12.62507 -12.21295 -12.17659 -12.14044 -11.97053 -11.71433 -11.36544 -11.34440 -11.07699 -10.98644 -10.90485 -10.75201 -10.45610 -10.26053 -10.20117 -10.14649 -9.78428 -9.66854 -8.96981 -8.65852 -7.03245 -5.83387 -3.12695 -0.38535 2.32966 2.45668 2.76421 3.37711 3.42836 3.44947 3.50638 3.71849 4.11128 4.32850 4.40466 4.51737 4.73090 4.76434 4.92166 5.14270 5.15645 5.23584 5.23818 5.37540 5.46137 5.54518 5.61262 5.63707 5.84011 5.92552 6.05720 6.09716 6.21730 6.28471 6.31704 6.40725 6.44813 6.60295 6.74589 6.90079 6.97190 7.24456 7.62292 7.86954 8.34538 9.46134 10.02960 10.37827 11.38862 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.003217 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.872405 B = 8700.470161 C = 9547.357930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.116 3.884 6 N -0.593 5.593 7 C 0.541 3.459 8 O -0.537 6.537 9 C -0.659 4.659 10 S 2.456 3.544 11 C -0.663 4.663 12 O -0.921 6.921 13 O -0.924 6.924 14 C 0.102 3.898 15 C -0.154 4.154 16 C 0.183 3.817 17 H 0.049 0.951 18 N -0.720 5.720 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 15.260 12.146 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.006 4.006 6 N -0.325 5.325 7 C 0.327 3.673 8 O -0.416 6.416 9 C -0.786 4.786 10 S 2.632 3.368 11 C -0.812 4.812 12 O -0.918 6.918 13 O -0.921 6.921 14 C -0.021 4.021 15 C -0.195 4.195 16 C 0.072 3.928 17 H 0.067 0.933 18 N -0.360 5.360 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.323 14.971 12.346 19.880 hybrid contribution 2.065 -0.251 -0.642 2.177 sum -2.258 14.720 11.704 18.940 Atomic orbital electron populations 1.21856 0.96695 1.01141 1.01428 1.21446 0.94476 0.95476 1.03532 1.21808 0.97672 0.96478 0.96641 0.90999 1.21890 0.99763 0.80745 0.98196 1.48026 1.08671 1.06595 1.69196 1.19056 0.86486 0.84569 0.77203 1.90840 1.13967 1.86065 1.50734 1.30884 1.21685 1.12193 1.13856 1.07157 0.76640 0.77271 0.75728 1.30402 1.16656 1.22555 1.11628 1.93603 1.58768 1.85497 1.53918 1.93591 1.74651 1.84382 1.39468 1.21980 0.79030 1.01368 0.99740 1.22722 1.02381 0.99496 0.94913 1.20188 0.90758 0.90450 0.91372 0.93322 1.42407 1.16504 1.64411 1.12685 1.19198 0.91769 1.27607 0.98610 0.91249 1.24734 0.98150 1.01444 0.96407 1.69659 1.35302 1.48160 1.04731 0.86228 0.83973 0.79355 0.76812 1.21729 1.21828 1.20834 0.93094 0.93147 0.92901 0.89711 0.92406 0.88688 0.91163 0.82371 0.82164 0.85170 0.84966 0.85269 0.90981 0.90343 0.90330 0.92017 0.78132 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.16 0.36 -1.77 16 2 C -0.11 -1.76 5.31 -26.73 -0.14 -1.90 16 3 C -0.11 -1.68 1.92 -90.50 -0.17 -1.86 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 5 C 0.12 1.64 5.32 -3.71 -0.02 1.62 16 6 N -0.59 -7.84 2.97 -172.77 -0.51 -8.35 16 7 C 0.54 7.39 7.72 -10.99 -0.08 7.31 16 8 O -0.54 -9.43 15.04 2.55 0.04 -9.39 16 9 C -0.66 -5.21 4.64 36.00 0.17 -5.04 16 10 S 2.46 22.72 4.60 -107.50 -0.49 22.22 16 11 C -0.66 -2.55 10.62 101.05 1.07 -1.48 16 12 O -0.92 -12.73 17.95 -59.53 -1.07 -13.80 16 13 O -0.92 -12.26 17.95 -59.52 -1.07 -13.33 16 14 C 0.10 1.15 6.34 -3.71 -0.02 1.13 16 15 C -0.15 -2.34 5.66 -26.61 -0.15 -2.49 16 16 C 0.18 3.26 2.19 -67.89 -0.15 3.11 16 17 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 18 N -0.72 -16.57 4.33 -53.39 -0.23 -16.80 16 19 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 20 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -27.03 13.06 55.49 0.72 -26.30 16 23 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.61 7.22 -51.93 -0.38 1.23 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.42 5.72 -51.93 -0.30 1.12 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.16 0.63 7.94 -51.92 -0.41 0.22 16 35 H 0.16 0.79 7.70 -51.93 -0.40 0.39 16 36 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 37 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 39 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.08 0.62 5.95 -51.93 -0.31 0.31 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.38 9.65 7.51 -40.82 -0.31 9.35 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 364.10 15.07 5.49 5.49 Total: -1.00 -37.27 364.10 -8.60 -45.87 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.06 Total: 6.07 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 0.61 Total: -8.15 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.02 Total: -51.46 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -2.10 Total: -36.51 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 22.72 SS G_CDS: -0.49 Total: 22.22 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.27 -8.60 -45.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037807050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.909 kcal (2) G-P(sol) polarization free energy of solvation -37.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds