Wall clock time and date at job start Tue Mar 31 2020 04:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46930 * 2 1 4 4 H 1.09002 * 109.52537 * 304.91923 * 3 2 1 5 5 C 1.53195 * 109.49760 * 64.99882 * 3 2 1 6 6 N 1.46919 * 108.89273 * 174.65835 * 5 3 2 7 7 C 1.34780 * 120.63395 * 126.29715 * 6 5 3 8 8 O 1.21284 * 119.99750 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00162 * 180.02562 * 7 6 5 10 10 S 1.81403 * 109.46984 * 180.02562 * 9 7 6 11 11 C 1.81395 * 101.92206 * 179.97438 * 10 9 7 12 12 O 1.42105 * 108.57750 * 294.48742 * 10 9 7 13 13 O 1.42105 * 108.57881 * 65.51203 * 10 9 7 14 14 C 1.46933 * 118.74003 * 306.32349 * 6 5 3 15 15 C 1.53188 * 108.77495 * 53.60503 * 14 6 5 16 16 C 1.53034 * 109.31404 * 305.36890 * 15 14 6 17 17 H 1.08996 * 109.45916 * 181.37287 * 16 15 14 18 18 N 1.46506 * 109.46080 * 301.34180 * 16 15 14 19 19 C 1.36932 * 120.00206 * 275.00497 * 18 16 15 20 20 H 1.07995 * 120.00021 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99589 * 179.97438 * 19 18 16 22 22 N 1.31616 * 120.00727 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99741 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47014 * 89.99966 * 23 21 19 25 25 H 1.48493 * 109.47199 * 209.99859 * 23 21 19 26 26 H 1.48504 * 109.47060 * 330.00268 * 23 21 19 27 27 H 1.09003 * 109.47189 * 60.00398 * 1 2 3 28 28 H 1.08997 * 109.46974 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47376 * 300.00117 * 1 2 3 30 30 H 1.08999 * 109.47376 * 239.99882 * 2 1 3 31 31 H 1.09003 * 109.47189 * 119.99602 * 2 1 3 32 32 H 1.09002 * 109.58720 * 54.79865 * 5 3 2 33 33 H 1.08996 * 109.58651 * 294.51761 * 5 3 2 34 34 H 1.09000 * 109.47171 * 299.99537 * 9 7 6 35 35 H 1.08993 * 109.47429 * 60.00485 * 9 7 6 36 36 H 1.09001 * 109.47510 * 59.99503 * 11 10 9 37 37 H 1.08996 * 109.47559 * 180.02562 * 11 10 9 38 38 H 1.09010 * 109.47359 * 300.00013 * 11 10 9 39 39 H 1.08994 * 109.58580 * 173.39910 * 14 6 5 40 40 H 1.09006 * 109.57831 * 293.67403 * 14 6 5 41 41 H 1.08994 * 109.49494 * 65.32533 * 15 14 6 42 42 H 1.09007 * 109.49349 * 185.38405 * 15 14 6 43 43 H 0.97007 * 119.99656 * 95.00201 * 18 16 15 44 44 H 0.96991 * 120.00497 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9820 -0.8424 5 6 1.6349 2.1280 1.3088 6 7 2.2387 3.4668 1.3513 7 6 1.4762 4.5575 1.5646 8 8 0.2798 4.4393 1.7242 9 6 2.1103 5.9240 1.6048 10 16 0.8321 7.1750 1.9079 11 6 1.8024 8.7076 1.9167 12 8 -0.0482 7.2022 0.7927 13 8 0.2979 6.9705 3.2088 14 6 3.6894 3.5941 1.1561 15 6 4.0744 2.8940 -0.1509 16 6 3.5687 1.4500 -0.1196 17 1 3.8626 0.9424 -1.0383 18 7 4.1510 0.7537 1.0304 19 6 5.3898 0.1793 0.9276 20 1 5.9374 0.2392 -0.0013 21 6 5.9416 -0.4800 2.0175 22 7 5.2745 -0.5525 3.1497 23 14 7.6313 -1.2642 1.8771 24 1 8.6695 -0.2757 2.2646 25 1 7.7072 -2.4411 2.7794 26 1 7.8603 -1.6991 0.4758 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.9906 1.5398 2.1547 33 1 0.5494 2.2151 1.3550 34 1 2.8489 5.9584 2.4056 35 1 2.5983 6.1264 0.6514 36 1 2.2995 8.8285 0.9542 37 1 1.1408 9.5556 2.0933 38 1 2.5503 8.6598 2.7083 39 1 3.9592 4.6486 1.0992 40 1 4.2126 3.1276 1.9910 41 1 3.6224 3.4197 -0.9919 42 1 5.1590 2.8980 -0.2598 43 1 3.6590 0.6996 1.8647 44 1 5.6603 -1.0128 3.9113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037807051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:37 Heat of formation + Delta-G solvation = -93.109403 kcal Electronic energy + Delta-G solvation = -26179.769125 eV Core-core repulsion = 22452.996824 eV Total energy + Delta-G solvation = -3726.772301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.23973 -38.00999 -37.06997 -36.07138 -34.62178 -33.81908 -31.80662 -31.02834 -29.76470 -29.44052 -28.22828 -24.95162 -23.86913 -23.55081 -20.91033 -20.14882 -18.91974 -18.39168 -17.63429 -17.27912 -16.68305 -16.43759 -16.04436 -15.39439 -15.30722 -14.70149 -14.39128 -14.06076 -13.74860 -13.60605 -13.57607 -13.47808 -13.32821 -13.13055 -12.70899 -12.53099 -12.32450 -12.12870 -12.06284 -11.86225 -11.46740 -11.30424 -11.15814 -11.09016 -10.95267 -10.87563 -10.71698 -10.40013 -10.31950 -10.22155 -9.96222 -9.85014 -9.61004 -8.99312 -8.39853 -7.04786 -5.85122 -3.14124 -0.29664 2.49390 2.54688 2.93608 3.36438 3.42870 3.44471 3.62172 3.80603 4.26121 4.42422 4.47061 4.51687 4.82109 4.89794 5.04536 5.19510 5.27152 5.29631 5.39064 5.46105 5.53190 5.66940 5.71507 5.75029 5.86697 6.00959 6.09540 6.11667 6.27195 6.30344 6.37332 6.48128 6.53133 6.63478 6.68942 6.85341 6.93260 7.46360 7.62527 8.04317 8.33062 9.44922 10.00938 10.36039 11.37086 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.003718 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.757511 B = 7529.872599 C = 8471.482528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.068 0.932 5 C 0.115 3.885 6 N -0.588 5.588 7 C 0.539 3.461 8 O -0.542 6.542 9 C -0.657 4.657 10 S 2.457 3.543 11 C -0.664 4.664 12 O -0.924 6.924 13 O -0.922 6.922 14 C 0.108 3.892 15 C -0.151 4.151 16 C 0.177 3.823 17 H 0.052 0.948 18 N -0.719 5.719 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.010 4.010 22 N -0.931 5.931 23 Si 0.904 3.096 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.283 1.283 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.330 15.165 -5.199 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.124 4.124 4 H 0.086 0.914 5 C -0.007 4.007 6 N -0.319 5.319 7 C 0.325 3.675 8 O -0.422 6.422 9 C -0.784 4.784 10 S 2.633 3.367 11 C -0.813 4.813 12 O -0.921 6.921 13 O -0.920 6.920 14 C -0.014 4.014 15 C -0.192 4.192 16 C 0.067 3.933 17 H 0.070 0.930 18 N -0.361 5.361 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.206 4.206 22 N -0.579 5.579 23 Si 0.735 3.265 24 H -0.219 1.219 25 H -0.219 1.219 26 H -0.208 1.208 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.177 0.823 35 H 0.176 0.824 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.658 14.867 -5.037 16.686 hybrid contribution 2.157 -0.279 0.108 2.178 sum -3.502 14.588 -4.930 15.791 Atomic orbital electron populations 1.21863 0.96696 1.01133 1.01474 1.21405 0.94372 0.95530 1.03428 1.21823 0.97368 0.96320 0.96897 0.91390 1.21821 0.99146 0.80979 0.98730 1.47993 1.08790 1.06396 1.68677 1.19030 0.86470 0.84570 0.77476 1.90824 1.14033 1.86087 1.51234 1.30861 1.21630 1.12211 1.13718 1.07121 0.76633 0.77228 0.75720 1.30408 1.16670 1.22648 1.11563 1.93587 1.59005 1.85599 1.53906 1.93595 1.74579 1.84272 1.39507 1.21854 0.78775 1.00228 1.00530 1.22540 1.01943 0.99472 0.95252 1.20284 0.89724 0.90565 0.92734 0.92959 1.42483 1.18952 1.64096 1.10589 1.19207 0.93478 1.27291 0.97121 0.91250 1.24702 0.98520 1.01367 0.96021 1.69639 1.38008 1.48027 1.02263 0.86244 0.84350 0.78785 0.77085 1.21850 1.21857 1.20843 0.93297 0.93088 0.92710 0.91943 0.90449 0.90257 0.89147 0.82317 0.82419 0.85288 0.85045 0.85216 0.91083 0.89215 0.93162 0.90518 0.78074 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.71 5.21 -26.73 -0.14 -1.85 16 3 C -0.10 -1.64 2.15 -90.34 -0.19 -1.84 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 5 C 0.12 1.91 5.02 -3.71 -0.02 1.89 16 6 N -0.59 -9.06 2.97 -172.77 -0.51 -9.58 16 7 C 0.54 8.24 7.72 -10.98 -0.08 8.16 16 8 O -0.54 -10.27 15.04 2.55 0.04 -10.23 16 9 C -0.66 -6.12 4.64 36.00 0.17 -5.95 16 10 S 2.46 25.03 4.60 -107.50 -0.49 24.54 16 11 C -0.66 -3.09 10.62 101.05 1.07 -2.02 16 12 O -0.92 -13.14 17.95 -59.53 -1.07 -14.21 16 13 O -0.92 -13.45 17.95 -59.52 -1.07 -14.52 16 14 C 0.11 1.55 6.08 -3.71 -0.02 1.52 16 15 C -0.15 -2.27 5.78 -26.62 -0.15 -2.43 16 16 C 0.18 3.13 2.54 -67.73 -0.17 2.95 16 17 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 18 N -0.72 -15.79 3.73 -53.23 -0.20 -15.98 16 19 C -0.24 -6.03 9.93 -15.06 -0.15 -6.18 16 20 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 22 N -0.93 -26.37 13.06 55.49 0.72 -25.64 16 23 Si 0.90 21.20 29.55 -169.99 -5.02 16.18 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.75 6.69 -51.93 -0.35 0.41 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.40 7.71 -51.93 -0.40 1.00 16 32 H 0.08 1.45 6.64 -51.93 -0.34 1.10 16 33 H 0.09 1.52 5.71 -51.93 -0.30 1.23 16 34 H 0.16 0.99 7.94 -51.92 -0.41 0.57 16 35 H 0.16 0.90 7.69 -51.93 -0.40 0.50 16 36 H 0.13 0.33 8.14 -51.92 -0.42 -0.10 16 37 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.07 0.73 5.93 -51.93 -0.31 0.43 16 40 H 0.09 1.53 7.75 -51.93 -0.40 1.13 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 43 H 0.38 9.11 5.95 -40.82 -0.24 8.86 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -36.07 360.54 -8.53 -44.60 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.92 Total: 7.25 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 0.57 Total: -7.83 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.01 Total: -51.20 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -2.10 Total: -38.96 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 25.03 SS G_CDS: -0.49 Total: 24.54 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.07 -8.53 -44.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037807051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.507 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds