Wall clock time and date at job start Tue Mar 31 2020 04:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53007 * 109.46863 * 2 1 4 4 C 1.50697 * 109.46885 * 119.99967 * 2 1 3 5 5 O 1.21283 * 119.99626 * 120.00567 * 4 2 1 6 6 N 1.34772 * 120.00066 * 299.99680 * 4 2 1 7 7 C 1.46500 * 120.00059 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47425 * 180.02562 * 7 6 4 9 9 C 1.53781 * 113.61609 * 175.00005 * 8 7 6 10 10 C 1.53781 * 87.08070 * 139.98229 * 9 8 7 11 11 N 1.46497 * 113.61305 * 219.93536 * 10 9 8 12 12 C 1.36944 * 119.99791 * 203.46713 * 11 10 9 13 13 H 1.07993 * 120.00042 * 0.02562 * 12 11 10 14 14 C 1.38812 * 119.99770 * 179.97438 * 12 11 10 15 15 N 1.31615 * 119.99762 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 120.00190 * 0.02562 * 14 12 11 17 17 H 1.48491 * 109.47113 * 89.99658 * 16 14 12 18 18 H 1.48503 * 109.46988 * 209.99850 * 16 14 12 19 19 H 1.48501 * 109.46739 * 329.99844 * 16 14 12 20 20 C 1.53786 * 87.17350 * 334.52830 * 10 9 8 21 21 S 1.81397 * 109.47095 * 240.00228 * 2 1 3 22 22 C 1.81400 * 101.92324 * 60.00217 * 21 2 1 23 23 O 1.42105 * 108.57466 * 174.48667 * 21 2 1 24 24 O 1.42100 * 108.57806 * 305.51113 * 21 2 1 25 25 H 1.08997 * 109.46787 * 299.99882 * 1 2 3 26 26 H 1.09000 * 109.46370 * 59.99774 * 1 2 3 27 27 H 1.08997 * 109.46819 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46707 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47474 * 299.99985 * 3 2 1 30 30 H 1.09005 * 109.46740 * 60.00254 * 3 2 1 31 31 H 0.96996 * 120.00586 * 0.02562 * 6 4 2 32 32 H 1.08997 * 109.47114 * 60.00231 * 7 6 4 33 33 H 1.09006 * 109.47306 * 300.00712 * 7 6 4 34 34 H 1.08996 * 112.84723 * 43.80825 * 8 7 6 35 35 H 1.08999 * 113.61181 * 25.43284 * 9 8 7 36 36 H 1.08998 * 113.61680 * 254.52836 * 9 8 7 37 37 H 1.09002 * 113.61445 * 89.11830 * 10 9 8 38 38 H 0.96995 * 120.00146 * 23.47603 * 11 10 9 39 39 H 0.97005 * 119.99972 * 180.02562 * 15 14 12 40 40 H 1.08992 * 113.61675 * 140.02412 * 20 10 9 41 41 H 1.09000 * 113.60973 * 270.92699 * 20 10 9 42 42 H 1.08996 * 109.47629 * 59.99895 * 22 21 2 43 43 H 1.08998 * 109.47265 * 180.02562 * 22 21 2 44 44 H 1.09006 * 109.46942 * 299.99763 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6964 1.1191 6 7 1.7068 -0.2499 2.4545 7 6 2.1955 -0.9402 3.6507 8 6 1.6850 -0.2194 4.9000 9 6 2.0415 -0.9355 6.2134 10 6 2.3192 0.4565 6.8052 11 7 3.4952 0.4991 7.6778 12 6 3.6054 1.4761 8.6311 13 1 2.8252 2.2148 8.7398 14 6 4.7194 1.5162 9.4582 15 7 4.8250 2.4549 10.3747 16 14 6.0686 0.2379 9.2706 17 1 7.0806 0.7253 8.2993 18 1 6.7169 0.0057 10.5863 19 1 5.4808 -1.0333 8.7770 20 6 2.6007 0.9274 5.3685 21 16 2.1347 -0.8551 -1.4811 22 6 1.4230 0.1516 -2.8118 23 8 3.5497 -0.7329 -1.5284 24 8 1.5480 -2.1484 -1.5285 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.1489 0.5385 2.5436 32 1 3.2855 -0.9398 3.6506 33 1 1.8327 -1.9681 3.6509 34 1 0.6343 0.0612 4.8270 35 1 2.9290 -1.5641 6.1409 36 1 1.1966 -1.4458 6.6757 37 1 1.4422 0.9232 7.2537 38 1 4.1958 -0.1645 7.5802 39 1 5.6037 2.4831 10.9526 40 1 2.2070 1.9198 5.1493 41 1 3.6408 0.8070 5.0655 42 1 1.7895 1.1748 -2.7292 43 1 1.7153 -0.2625 -3.7768 44 1 0.3361 0.1471 -2.7292 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100725076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:15 Heat of formation + Delta-G solvation = -72.069617 kcal Electronic energy + Delta-G solvation = -25086.167809 eV Core-core repulsion = 21360.307862 eV Total energy + Delta-G solvation = -3725.859947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.46668 -38.74758 -37.33428 -36.31849 -35.74318 -34.90215 -33.33053 -30.79359 -30.00977 -28.13697 -27.72497 -25.27955 -24.46276 -23.55373 -21.14853 -20.98162 -19.50004 -18.89741 -18.02879 -17.47922 -17.15911 -16.27389 -16.18244 -15.89583 -15.65832 -15.11119 -14.74709 -14.50620 -14.15575 -13.95965 -13.72902 -13.67118 -13.59265 -13.17268 -12.81776 -12.78175 -12.72063 -12.34786 -12.33168 -12.28108 -12.04639 -12.01878 -11.69888 -11.61566 -11.39580 -10.93802 -10.89569 -10.55528 -10.52991 -10.18001 -10.10405 -9.88090 -9.59349 -9.28883 -8.93086 -7.31026 -5.81818 -3.17650 -0.50000 2.14649 2.28095 2.62740 3.35843 3.39180 3.43802 3.44163 3.52069 3.90499 3.96754 4.16911 4.30009 4.51902 4.55506 4.73066 4.75155 4.77478 4.85364 4.91114 4.96802 5.02794 5.12608 5.30627 5.35893 5.37875 5.46125 5.57617 5.64694 5.72893 5.77408 6.03094 6.11237 6.15707 6.23576 6.42511 6.60508 6.91631 7.07785 7.76119 7.94132 8.37927 9.15666 9.88488 10.07976 11.36301 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027135 B = 0.002477 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.628290 B =11301.269317 C =11476.133558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.580 4.580 3 C -0.140 4.140 4 C 0.546 3.454 5 O -0.529 6.529 6 N -0.707 5.707 7 C 0.128 3.872 8 C -0.127 4.127 9 C -0.144 4.144 10 C 0.172 3.828 11 N -0.737 5.737 12 C -0.249 4.249 13 H 0.091 0.909 14 C 0.005 3.995 15 N -0.933 5.933 16 Si 0.884 3.116 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.276 1.276 20 C -0.161 4.161 21 S 2.453 3.547 22 C -0.665 4.665 23 O -0.919 6.919 24 O -0.921 6.921 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.403 0.597 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.363 0.637 39 H 0.260 0.740 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.078 -2.055 -27.179 30.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.669 4.669 3 C -0.198 4.198 4 C 0.329 3.671 5 O -0.406 6.406 6 N -0.358 5.358 7 C 0.005 3.995 8 C -0.147 4.147 9 C -0.184 4.184 10 C 0.061 3.939 11 N -0.377 5.377 12 C -0.379 4.379 13 H 0.108 0.892 14 C -0.191 4.191 15 N -0.580 5.580 16 Si 0.714 3.286 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.202 1.202 20 C -0.202 4.202 21 S 2.629 3.371 22 C -0.814 4.814 23 O -0.916 6.916 24 O -0.918 6.918 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.238 0.762 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.196 0.804 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.065 -3.298 -27.052 29.804 hybrid contribution 0.220 0.377 0.075 0.443 sum -11.846 -2.920 -26.977 29.608 Atomic orbital electron populations 1.21811 0.87661 1.05019 1.05217 1.30524 1.08329 1.10895 1.17187 1.21824 1.03355 0.89398 1.05254 1.19064 0.80245 0.83839 0.83923 1.90869 1.37656 1.25810 1.86269 1.45807 1.52920 1.31890 1.05141 1.21586 0.99783 0.96040 0.82104 1.22700 0.99965 0.99011 0.92984 1.23452 1.01415 0.99010 0.94535 1.21493 0.91126 0.92886 0.88421 1.42766 1.20623 1.34317 1.40004 1.19119 1.05061 1.05333 1.08403 0.89166 1.24699 0.98240 0.98209 0.97925 1.69701 1.30364 1.34785 1.23142 0.86556 0.82904 0.81938 0.77176 1.21012 1.21665 1.20241 1.23982 0.98911 0.96567 1.00764 1.07457 0.76074 0.76366 0.77191 1.30455 1.14290 1.16950 1.19673 1.93590 1.26438 1.86467 1.85099 1.93579 1.79417 1.33625 1.85169 0.89638 0.90056 0.89758 0.89634 0.90054 0.89531 0.76173 0.90757 0.91150 0.89018 0.90218 0.91526 0.89901 0.80406 0.92995 0.92267 0.90324 0.84947 0.84805 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.58 8.12 37.16 0.30 -0.27 16 2 C -0.58 -4.27 0.72 -91.77 -0.07 -4.33 16 3 C -0.14 -0.68 8.12 37.16 0.30 -0.37 16 4 C 0.55 6.38 6.50 -10.99 -0.07 6.31 16 5 O -0.53 -8.71 15.62 2.55 0.04 -8.68 16 6 N -0.71 -6.92 5.34 -60.29 -0.32 -7.24 16 7 C 0.13 1.50 5.51 -4.04 -0.02 1.48 16 8 C -0.13 -1.48 3.76 -89.67 -0.34 -1.82 16 9 C -0.14 -2.05 7.39 -25.92 -0.19 -2.24 16 10 C 0.17 3.06 4.47 -67.12 -0.30 2.76 16 11 N -0.74 -16.96 5.21 -52.64 -0.27 -17.23 16 12 C -0.25 -6.90 10.45 -15.06 -0.16 -7.05 16 13 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 14 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 15 N -0.93 -29.03 13.97 55.49 0.78 -28.26 16 16 Si 0.88 22.04 27.74 -169.99 -4.71 17.32 16 17 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 20 C -0.16 -2.38 7.45 -25.77 -0.19 -2.58 16 21 S 2.45 22.72 3.65 -107.50 -0.39 22.33 16 22 C -0.66 -2.23 9.72 101.05 0.98 -1.25 16 23 O -0.92 -12.29 17.76 -59.53 -1.06 -13.34 16 24 O -0.92 -11.95 17.76 -59.53 -1.06 -13.00 16 25 H 0.08 0.24 7.56 -51.93 -0.39 -0.15 16 26 H 0.08 0.07 6.56 -51.93 -0.34 -0.27 16 27 H 0.08 0.44 8.06 -51.93 -0.42 0.02 16 28 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 29 H 0.08 0.11 6.56 -51.93 -0.34 -0.23 16 30 H 0.09 0.32 7.56 -51.93 -0.39 -0.07 16 31 H 0.40 2.71 7.31 -40.82 -0.30 2.41 16 32 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.17 8.07 -51.93 -0.42 0.76 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 38 H 0.36 8.28 5.77 -40.82 -0.24 8.05 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.27 7.90 -51.93 -0.41 0.86 16 42 H 0.13 0.16 6.87 -51.93 -0.36 -0.20 16 43 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.13 0.12 6.87 -51.92 -0.36 -0.23 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -39.35 365.67 -8.25 -47.60 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.91 Total: 4.30 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 0.15 Total: -9.32 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.18 Total: -52.73 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -2.07 Total: -35.02 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Atomic # 16 Polarization: 22.72 SS G_CDS: -0.39 Total: 22.33 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.35 -8.25 -47.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100725076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.468 kcal (2) G-P(sol) polarization free energy of solvation -39.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds