Wall clock time and date at job start Tue Mar 31 2020 05:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47431 * 2 1 4 4 S 1.81400 * 109.47493 * 120.00422 * 2 1 3 5 5 O 1.42105 * 108.57657 * 305.51509 * 4 2 1 6 6 O 1.42100 * 108.58122 * 174.48688 * 4 2 1 7 7 C 1.81397 * 101.92324 * 59.99818 * 4 2 1 8 8 C 1.50697 * 109.47467 * 180.02562 * 7 4 2 9 9 O 1.21283 * 119.99626 * 0.02562 * 8 7 4 10 10 N 1.34772 * 120.00066 * 179.97438 * 8 7 4 11 11 C 1.46500 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46497 * 113.61305 * 219.93536 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00274 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46726 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47021 * 120.00168 * 20 18 16 23 23 H 1.48502 * 109.47101 * 240.00261 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 25 25 H 1.09006 * 109.46735 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47317 * 299.99442 * 1 2 3 27 27 H 1.08992 * 109.47296 * 59.99811 * 1 2 3 28 28 H 1.09006 * 109.47071 * 240.00398 * 2 1 3 29 29 H 1.09002 * 109.47971 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47212 * 300.00439 * 3 2 1 31 31 H 1.09006 * 109.46668 * 60.00151 * 3 2 1 32 32 H 1.09005 * 109.47345 * 59.99902 * 7 4 2 33 33 H 1.09006 * 109.47160 * 300.00609 * 7 4 2 34 34 H 0.96996 * 120.00586 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 36 36 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 37 37 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 38 38 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 39 39 H 1.08998 * 113.61680 * 254.52836 * 13 12 11 40 40 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 41 41 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 42 42 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 43 43 H 1.08992 * 113.61675 * 140.02412 * 24 14 13 44 44 H 1.09000 * 113.60973 * 270.92699 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 2.1347 -0.8552 1.4810 5 8 1.5479 -0.2496 2.6248 6 8 3.5497 -0.9572 1.3989 7 6 1.4230 -2.5109 1.2746 8 6 1.8272 -3.3801 2.4374 9 8 2.5262 -2.9270 3.3189 10 7 1.4110 -4.6605 2.4984 11 6 1.8035 -5.5053 3.6291 12 6 1.2033 -6.9018 3.4549 13 6 1.6555 -7.9051 4.5291 14 6 0.2104 -8.4309 4.5342 15 7 -0.2916 -8.7547 5.8719 16 6 -1.3184 -9.6486 6.0201 17 1 -1.7578 -10.1151 5.1509 18 6 -1.7936 -9.9558 7.2876 19 7 -1.2577 -9.3875 8.3470 20 14 -3.1938 -11.1757 7.4899 21 1 -3.6175 -11.6685 6.1546 22 1 -2.7372 -12.3202 8.3186 23 1 -4.3400 -10.5075 8.1570 24 6 -0.2168 -7.0401 4.0358 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9562 0.8901 32 1 1.7894 -2.9509 0.3471 33 1 0.3361 -2.4371 1.2371 34 1 0.8517 -5.0228 1.7936 35 1 1.4367 -5.0648 4.5562 36 1 2.8904 -5.5794 3.6673 37 1 1.2987 -7.2795 2.4370 38 1 1.9528 -7.4360 5.4670 39 1 2.3833 -8.6320 4.1688 40 1 0.0329 -9.2272 3.8113 41 1 0.1033 -8.3358 6.6525 42 1 -1.5900 -9.6019 9.2327 43 1 -0.9993 -7.0693 3.2777 44 1 -0.4304 -6.3351 4.8392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100996708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:32 Heat of formation + Delta-G solvation = -82.173060 kcal Electronic energy + Delta-G solvation = -24292.236674 eV Core-core repulsion = 20565.938609 eV Total energy + Delta-G solvation = -3726.298066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.07887 -38.54119 -37.30091 -36.29391 -35.61871 -34.89828 -33.37016 -31.34296 -30.13392 -27.97514 -27.00041 -25.14345 -23.90600 -23.17514 -21.18123 -21.09046 -19.16848 -19.01955 -17.89488 -17.34333 -17.05627 -16.75013 -16.36159 -15.74673 -15.66233 -15.05041 -14.82185 -14.72786 -14.02160 -13.86745 -13.81152 -13.64011 -13.54560 -13.05705 -12.93491 -12.81691 -12.31915 -12.24365 -12.04478 -11.99460 -11.97599 -11.87279 -11.44172 -11.42571 -11.28255 -10.88312 -10.68856 -10.65611 -10.46915 -10.17266 -10.07776 -9.86994 -9.55485 -9.22977 -8.90179 -6.98950 -5.80485 -3.09710 -0.51493 2.19093 2.33284 2.70467 3.40660 3.43778 3.45958 3.48629 3.54764 3.94897 4.00188 4.16973 4.44624 4.49976 4.55826 4.62518 4.88536 4.89019 4.91612 4.95868 5.04023 5.16126 5.16229 5.42227 5.43975 5.44715 5.46001 5.74696 5.77255 5.87116 6.05351 6.10332 6.24396 6.30103 6.35329 6.53719 6.76739 7.06775 7.12082 7.67023 7.80528 8.37909 9.49004 10.07101 10.41130 11.41846 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029481 B = 0.002067 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.523523 B =13545.570294 C =13822.835326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.582 4.582 3 C -0.143 4.143 4 S 2.450 3.550 5 O -0.915 6.915 6 O -0.920 6.920 7 C -0.663 4.663 8 C 0.537 3.463 9 O -0.530 6.530 10 N -0.711 5.711 11 C 0.126 3.874 12 C -0.128 4.128 13 C -0.141 4.141 14 C 0.166 3.834 15 N -0.713 5.713 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.014 4.014 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.162 4.162 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.404 0.596 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.054 0.946 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 18.361 -23.215 30.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.691 4.691 3 C -0.202 4.202 4 S 2.626 3.374 5 O -0.912 6.912 6 O -0.917 6.917 7 C -0.790 4.790 8 C 0.321 3.679 9 O -0.408 6.408 10 N -0.361 5.361 11 C 0.004 3.996 12 C -0.147 4.147 13 C -0.181 4.181 14 C 0.054 3.946 15 N -0.351 5.351 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.203 4.203 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.155 0.845 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.177 0.823 33 H 0.179 0.821 34 H 0.238 0.762 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.809 18.793 -21.866 29.412 hybrid contribution -1.535 -1.098 -0.818 2.057 sum 4.274 17.695 -22.685 29.086 Atomic orbital electron populations 1.21771 0.89883 1.03688 1.05330 1.30184 1.07112 1.10315 1.21512 1.21642 1.02240 0.91454 1.04830 1.07696 0.76035 0.76530 0.77099 1.93584 1.79185 1.73524 1.44881 1.93581 1.26450 1.85232 1.86486 1.30917 1.16101 1.24361 1.07668 1.19084 0.80478 0.82887 0.85488 1.90883 1.37601 1.72948 1.39330 1.45899 1.52785 1.10911 1.26518 1.21615 0.99957 0.89495 0.88564 1.22706 0.99080 0.93338 0.99623 1.23432 0.99508 0.97293 0.97881 1.21510 0.90864 0.93024 0.89223 1.42424 1.40097 1.50862 1.01728 1.19334 1.09082 1.16758 0.92397 0.91053 1.24789 1.00097 1.00570 0.95526 1.69671 1.44206 1.46468 0.97543 0.86116 0.81865 0.80685 0.77488 1.20556 1.21830 1.21839 1.24023 0.93694 1.02625 0.99971 0.91189 0.90060 0.90031 0.84504 0.90666 0.89871 0.90579 0.82293 0.82122 0.76151 0.90588 0.91148 0.89272 0.89964 0.91872 0.90738 0.78026 0.93453 0.92743 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 8.94 37.16 0.33 -0.17 16 2 C -0.58 -2.69 3.31 -26.74 -0.09 -2.78 16 3 C -0.14 -0.72 9.20 37.16 0.34 -0.38 16 4 S 2.45 23.21 3.49 -107.50 -0.37 22.84 16 5 O -0.91 -12.33 17.76 -59.55 -1.06 -13.39 16 6 O -0.92 -12.25 17.95 -59.51 -1.07 -13.32 16 7 C -0.66 -4.43 5.84 36.00 0.21 -4.22 16 8 C 0.54 6.53 7.85 -10.99 -0.09 6.44 16 9 O -0.53 -9.06 15.62 2.55 0.04 -9.02 16 10 N -0.71 -7.43 5.56 -60.29 -0.33 -7.77 16 11 C 0.13 1.61 5.51 -4.04 -0.02 1.59 16 12 C -0.13 -1.62 3.76 -89.67 -0.34 -1.96 16 13 C -0.14 -2.18 7.39 -25.92 -0.19 -2.37 16 14 C 0.17 3.12 4.47 -67.12 -0.30 2.82 16 15 N -0.71 -17.58 5.41 -52.64 -0.28 -17.87 16 16 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 20 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C -0.16 -2.57 7.45 -25.77 -0.19 -2.76 16 25 H 0.07 0.09 6.56 -51.93 -0.34 -0.25 16 26 H 0.08 0.34 8.06 -51.93 -0.42 -0.08 16 27 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.14 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.16 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.16 0.51 6.87 -51.92 -0.36 0.15 16 34 H 0.40 2.85 8.47 -40.82 -0.35 2.50 16 35 H 0.08 1.11 7.85 -51.93 -0.41 0.70 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 41 H 0.39 10.17 7.91 -40.82 -0.32 9.85 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 LS Contribution 376.25 15.07 5.67 5.67 Total: -1.00 -38.85 376.25 -9.50 -48.36 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.22 Total: 5.82 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -0.58 Total: -11.14 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.10 Total: -52.98 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -2.09 Total: -35.73 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 23.21 SS G_CDS: -0.37 Total: 22.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.85 -9.50 -48.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100996708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.816 kcal (2) G-P(sol) polarization free energy of solvation -38.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds