Wall clock time and date at job start Tue Mar 31 2020 05:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47431 * 2 1 4 4 S 1.81400 * 109.47493 * 120.00422 * 2 1 3 5 5 O 1.42105 * 108.57657 * 305.51509 * 4 2 1 6 6 O 1.42100 * 108.58122 * 174.48688 * 4 2 1 7 7 C 1.81397 * 101.92324 * 59.99818 * 4 2 1 8 8 C 1.50697 * 109.47467 * 180.02562 * 7 4 2 9 9 O 1.21283 * 119.99626 * 0.02562 * 8 7 4 10 10 N 1.34772 * 120.00066 * 179.97438 * 8 7 4 11 11 C 1.46500 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46497 * 113.61305 * 219.93536 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00274 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46726 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47021 * 120.00168 * 20 18 16 23 23 H 1.48502 * 109.47101 * 240.00261 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 25 25 H 1.09006 * 109.46735 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47317 * 299.99442 * 1 2 3 27 27 H 1.08992 * 109.47296 * 59.99811 * 1 2 3 28 28 H 1.09006 * 109.47071 * 240.00398 * 2 1 3 29 29 H 1.09002 * 109.47971 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47212 * 300.00439 * 3 2 1 31 31 H 1.09006 * 109.46668 * 60.00151 * 3 2 1 32 32 H 1.09005 * 109.47345 * 59.99902 * 7 4 2 33 33 H 1.09006 * 109.47160 * 300.00609 * 7 4 2 34 34 H 0.96996 * 120.00586 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 36 36 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 37 37 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 38 38 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 39 39 H 1.08998 * 113.61680 * 254.52836 * 13 12 11 40 40 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 41 41 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 42 42 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 43 43 H 1.08992 * 113.61675 * 140.02412 * 24 14 13 44 44 H 1.09000 * 113.60973 * 270.92699 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 2.1347 -0.8552 1.4810 5 8 1.5479 -0.2496 2.6248 6 8 3.5497 -0.9572 1.3989 7 6 1.4230 -2.5109 1.2746 8 6 1.8272 -3.3801 2.4374 9 8 2.5262 -2.9270 3.3189 10 7 1.4110 -4.6605 2.4984 11 6 1.8035 -5.5053 3.6291 12 6 1.2033 -6.9018 3.4549 13 6 1.6555 -7.9051 4.5291 14 6 0.2104 -8.4309 4.5342 15 7 -0.2916 -8.7547 5.8719 16 6 -1.3184 -9.6486 6.0201 17 1 -1.7578 -10.1151 5.1509 18 6 -1.7936 -9.9558 7.2876 19 7 -1.2577 -9.3875 8.3470 20 14 -3.1938 -11.1757 7.4899 21 1 -3.6175 -11.6685 6.1546 22 1 -2.7372 -12.3202 8.3186 23 1 -4.3400 -10.5075 8.1570 24 6 -0.2168 -7.0401 4.0358 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9562 0.8901 32 1 1.7894 -2.9509 0.3471 33 1 0.3361 -2.4371 1.2371 34 1 0.8517 -5.0228 1.7936 35 1 1.4367 -5.0648 4.5562 36 1 2.8904 -5.5794 3.6673 37 1 1.2987 -7.2795 2.4370 38 1 1.9528 -7.4360 5.4670 39 1 2.3833 -8.6320 4.1688 40 1 0.0329 -9.2272 3.8113 41 1 0.1033 -8.3358 6.6525 42 1 -1.5900 -9.6019 9.2327 43 1 -0.9993 -7.0693 3.2777 44 1 -0.4304 -6.3351 4.8392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100996708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:09 Heat of formation + Delta-G solvation = -114.550524 kcal Electronic energy + Delta-G solvation = -24293.640667 eV Core-core repulsion = 20565.938609 eV Total energy + Delta-G solvation = -3727.702058 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 23.34 seconds Orbital eigenvalues (eV) -41.08909 -39.84004 -38.08820 -37.06845 -36.21498 -35.94613 -35.09845 -32.46457 -31.63585 -28.59306 -27.92018 -26.46566 -25.77853 -23.65849 -22.53738 -22.02628 -20.51474 -19.70951 -19.09209 -18.58983 -18.13318 -17.48745 -17.14845 -16.85355 -16.50077 -16.37404 -15.99994 -15.55435 -15.39017 -15.11024 -14.73743 -14.61512 -14.22468 -14.09831 -13.68494 -13.41913 -13.24233 -13.20730 -13.14086 -13.04389 -13.02982 -12.93717 -12.67357 -12.36230 -12.33127 -12.19555 -12.06186 -12.03444 -11.72787 -11.56778 -11.33215 -11.14230 -11.01533 -10.82187 -10.24223 -8.97821 -7.94576 -5.23147 -1.14041 1.31357 1.47342 1.48235 1.58247 1.73955 1.90136 2.56647 2.80973 2.99734 3.36915 3.45367 3.59814 3.64371 3.70774 3.72731 3.91724 3.99717 4.20700 4.23339 4.25162 4.34213 4.40487 4.53571 4.63215 4.66513 4.72608 4.77305 4.89121 4.96095 4.98596 5.03706 5.12759 5.19647 5.27706 5.28460 5.39632 5.52418 5.73133 6.27620 6.28501 7.00756 7.32961 8.11741 8.32850 9.29206 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029481 B = 0.002067 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.523523 B =13545.570294 C =13822.835326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.540 4.540 3 C -0.160 4.160 4 S 2.416 3.584 5 O -0.978 6.978 6 O -0.979 6.979 7 C -0.645 4.645 8 C 0.522 3.478 9 O -0.592 6.592 10 N -0.695 5.695 11 C 0.129 3.871 12 C -0.093 4.093 13 C -0.139 4.139 14 C 0.143 3.857 15 N -0.732 5.732 16 C -0.239 4.239 17 H 0.082 0.918 18 C -0.083 4.083 19 N -0.973 5.973 20 Si 0.974 3.026 21 H -0.261 1.261 22 H -0.296 1.296 23 H -0.296 1.296 24 C -0.154 4.154 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.180 0.820 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.213 0.787 33 H 0.204 0.796 34 H 0.425 0.575 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.129 0.871 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.073 0.927 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 17.846 -28.086 33.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.654 4.654 3 C -0.218 4.218 4 S 2.601 3.399 5 O -0.975 6.975 6 O -0.976 6.976 7 C -0.774 4.774 8 C 0.308 3.692 9 O -0.473 6.473 10 N -0.347 5.347 11 C 0.005 3.995 12 C -0.112 4.112 13 C -0.179 4.179 14 C 0.033 3.967 15 N -0.369 5.369 16 C -0.371 4.371 17 H 0.099 0.901 18 C -0.275 4.275 19 N -0.624 5.624 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.223 1.223 23 H -0.224 1.224 24 C -0.195 4.195 25 H 0.118 0.882 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.198 0.802 29 H 0.087 0.913 30 H 0.131 0.869 31 H 0.082 0.918 32 H 0.230 0.770 33 H 0.221 0.779 34 H 0.264 0.736 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.346 18.271 -26.795 32.721 hybrid contribution -1.076 -0.893 0.553 1.504 sum 3.270 17.378 -26.242 31.643 Atomic orbital electron populations 1.21995 0.88276 1.05902 1.05713 1.29877 1.08088 1.09138 1.18283 1.21849 1.02190 0.92081 1.05692 1.08217 0.75274 0.77869 0.78533 1.93509 1.79528 1.75120 1.49313 1.93507 1.30048 1.86301 1.87739 1.30775 1.18601 1.20749 1.07298 1.19988 0.79493 0.83482 0.86229 1.90872 1.40311 1.74138 1.42015 1.45715 1.52516 1.10326 1.26171 1.21383 0.99776 0.89774 0.88597 1.22534 0.95736 0.92434 1.00503 1.23333 0.97795 0.98291 0.98440 1.21976 0.93203 0.94635 0.86856 1.42672 1.39970 1.50693 1.03575 1.19780 1.08841 1.15930 0.92544 0.90062 1.25635 1.03193 1.03167 0.95506 1.69839 1.46211 1.48688 0.97708 0.85056 0.78598 0.78109 0.77899 1.18558 1.22315 1.22370 1.23786 0.96370 0.99560 0.99762 0.88232 0.91584 0.87721 0.80227 0.91257 0.86915 0.91770 0.77008 0.77871 0.73629 0.93396 0.91358 0.85278 0.91773 0.90128 0.89890 0.79765 0.94172 0.90801 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 774. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.39 8.94 71.98 0.64 0.25 16 2 C -0.54 -3.16 3.31 30.59 0.10 -3.06 16 3 C -0.16 -1.31 9.20 71.98 0.66 -0.65 16 4 S 2.42 44.66 3.49 -56.49 -0.20 44.47 16 5 O -0.98 -28.16 17.76 -125.73 -2.23 -30.39 16 6 O -0.98 -27.21 17.95 -125.77 -2.26 -29.47 16 7 C -0.65 -6.34 5.84 71.23 0.42 -5.93 16 8 C 0.52 11.97 7.85 87.66 0.69 12.66 16 9 O -0.59 -21.07 15.62 -0.16 0.00 -21.07 16 10 N -0.70 -12.68 5.56 -463.06 -2.57 -15.26 16 11 C 0.13 3.13 5.51 86.38 0.48 3.61 16 12 C -0.09 -2.10 3.76 -10.18 -0.04 -2.13 16 13 C -0.14 -4.13 7.39 31.12 0.23 -3.90 16 14 C 0.14 5.20 4.47 45.52 0.20 5.40 16 15 N -0.73 -36.53 5.41 -320.44 -1.73 -38.26 16 16 C -0.24 -13.09 9.97 84.03 0.84 -12.25 16 17 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 18 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 19 N -0.97 -60.49 13.06 21.65 0.28 -60.20 16 20 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 24 C -0.15 -4.62 7.45 31.21 0.23 -4.39 16 25 H 0.10 -0.33 6.56 -2.38 -0.02 -0.35 16 26 H 0.07 0.41 8.06 -2.39 -0.02 0.39 16 27 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.18 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.21 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.20 0.20 6.87 -2.39 -0.02 0.18 16 34 H 0.43 3.94 8.47 -92.71 -0.79 3.16 16 35 H 0.05 1.45 7.85 -2.39 -0.02 1.43 16 36 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 2.15 8.07 -2.39 -0.02 2.13 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.08 2.88 8.11 -2.39 -0.02 2.86 16 41 H 0.37 20.33 7.91 -92.71 -0.73 19.60 16 42 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 1.91 7.90 -2.39 -0.02 1.89 16 Total: -1.00 -93.74 376.25 -2.28 -96.02 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -0.51 Total: 20.88 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 4.92 Total: -14.72 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -4.02 Total: -113.72 kcal Atomic # 8 Polarization: -76.44 SS G_CDS: -4.49 Total: -80.94 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 16 Polarization: 44.66 SS G_CDS: -0.20 Total: 44.47 kcal Total: -93.74 -2.28 -96.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100996708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.533 kcal (2) G-P(sol) polarization free energy of solvation -93.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.34 seconds