Wall clock time and date at job start Tue Mar 31 2020 05:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47376 * 2 1 4 4 S 1.81400 * 109.47127 * 179.97438 * 3 2 1 5 5 O 1.42105 * 108.57657 * 65.52118 * 4 3 2 6 6 O 1.42100 * 108.58122 * 294.49296 * 4 3 2 7 7 C 1.81397 * 101.92324 * 180.02562 * 4 3 2 8 8 C 1.50697 * 109.47467 * 180.02562 * 7 4 3 9 9 O 1.21283 * 119.99626 * 0.02562 * 8 7 4 10 10 N 1.34772 * 120.00066 * 179.97438 * 8 7 4 11 11 C 1.46500 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46497 * 113.61305 * 219.93536 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00274 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47017 * 89.99868 * 20 18 16 22 22 H 1.48492 * 109.47131 * 210.00443 * 20 18 16 23 23 H 1.48501 * 109.46802 * 330.00196 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 25 25 H 1.09001 * 109.47005 * 59.99341 * 1 2 3 26 26 H 1.08991 * 109.47259 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46557 * 299.99817 * 1 2 3 28 28 H 1.09006 * 109.46852 * 240.00566 * 2 1 3 29 29 H 1.09002 * 109.47123 * 120.01195 * 2 1 3 30 30 H 1.09006 * 109.46668 * 60.00453 * 3 2 1 31 31 H 1.08996 * 109.47301 * 300.00691 * 3 2 1 32 32 H 1.09005 * 109.47345 * 59.99902 * 7 4 3 33 33 H 1.09006 * 109.47160 * 300.00609 * 7 4 3 34 34 H 0.96996 * 120.00586 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 36 36 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 37 37 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 38 38 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 39 39 H 1.08998 * 113.61680 * 254.52836 * 13 12 11 40 40 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 41 41 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 42 42 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 43 43 H 1.08992 * 113.61675 * 140.02412 * 24 14 13 44 44 H 1.09000 * 113.60973 * 270.92699 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 3.8541 1.4424 0.0008 5 8 4.3073 0.8840 -1.2249 6 8 4.3064 0.8841 1.2268 7 6 4.2290 3.2172 0.0015 8 6 5.7229 3.4152 0.0015 9 8 6.4620 2.4535 0.0006 10 7 6.2376 4.6607 0.0015 11 6 7.6899 4.8532 0.0009 12 6 8.0060 6.3502 0.0017 13 6 9.5068 6.6628 0.1240 14 6 9.2775 7.7811 -0.9064 15 7 10.3554 7.9016 -1.8912 16 6 10.5558 9.0880 -2.5452 17 1 9.9196 9.9348 -2.3347 18 6 11.5775 9.2023 -3.4780 19 7 12.3533 8.1703 -3.7342 20 14 11.8514 10.8208 -4.3696 21 1 12.8016 11.6583 -3.5944 22 1 12.4128 10.5541 -5.7182 23 1 10.5573 11.5365 -4.5048 24 6 8.0727 6.9676 -1.4081 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 1.6768 1.9562 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.8009 3.6786 0.8914 33 1 3.8016 3.6792 -0.8886 34 1 5.6465 5.4298 0.0018 35 1 8.1172 4.3917 -0.8892 36 1 8.1180 4.3913 0.8907 37 1 7.3846 6.9136 0.6976 38 1 10.1506 5.8611 -0.2377 39 1 9.7976 7.0292 1.1085 40 1 9.0035 8.7369 -0.4598 41 1 10.9270 7.1411 -2.0801 42 1 13.0669 8.2501 -4.3862 43 1 7.2068 7.5798 -1.6597 44 1 8.3254 6.2491 -2.1879 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100996774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:36 Heat of formation + Delta-G solvation = -85.025586 kcal Electronic energy + Delta-G solvation = -23945.775574 eV Core-core repulsion = 20219.353814 eV Total energy + Delta-G solvation = -3726.421760 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.08098 -38.54217 -37.25803 -36.30621 -35.39335 -34.90020 -33.37161 -31.31989 -30.12081 -28.28279 -27.07360 -25.14421 -23.89901 -22.56992 -21.17309 -21.06361 -19.23193 -19.08818 -17.80454 -17.18729 -17.05311 -16.87894 -16.35297 -15.95515 -15.67944 -15.22613 -14.82488 -14.75834 -14.10166 -13.99832 -13.81121 -13.57509 -13.11291 -13.11216 -13.04704 -12.82580 -12.30579 -12.24137 -12.01168 -11.97755 -11.87409 -11.47249 -11.45302 -11.44197 -11.28149 -10.87534 -10.86462 -10.65749 -10.47456 -10.19307 -10.08718 -9.86921 -9.55305 -9.23252 -8.89696 -6.98951 -5.80285 -3.09560 -0.52253 2.18830 2.35062 2.70030 3.40946 3.42441 3.45938 3.48051 3.58911 4.00034 4.08593 4.16841 4.44902 4.55318 4.55938 4.65346 4.78314 4.88892 4.91733 4.96056 5.07192 5.16008 5.40633 5.42030 5.42106 5.43966 5.60720 5.74512 5.77078 5.87055 6.05375 6.10071 6.24278 6.30007 6.35222 6.53677 6.76677 7.06702 7.11720 7.66580 7.80170 8.38086 9.49130 10.07193 10.41269 11.41967 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.032019 B = 0.001931 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.265362 B =14496.094909 C =14709.831766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.619 4.619 4 S 2.450 3.550 5 O -0.917 6.917 6 O -0.920 6.920 7 C -0.662 4.662 8 C 0.537 3.463 9 O -0.530 6.530 10 N -0.711 5.711 11 C 0.127 3.873 12 C -0.128 4.128 13 C -0.141 4.141 14 C 0.166 3.834 15 N -0.713 5.713 16 C -0.246 4.246 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.162 4.162 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.404 0.596 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.054 0.946 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.287 -11.523 10.841 30.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.748 4.748 4 S 2.627 3.373 5 O -0.914 6.914 6 O -0.917 6.917 7 C -0.790 4.790 8 C 0.320 3.680 9 O -0.407 6.407 10 N -0.361 5.361 11 C 0.004 3.996 12 C -0.147 4.147 13 C -0.181 4.181 14 C 0.054 3.946 15 N -0.351 5.351 16 C -0.377 4.377 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.208 1.208 24 C -0.203 4.203 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.238 0.762 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.081 -12.676 10.738 30.084 hybrid contribution -0.638 1.960 -0.617 2.152 sum -25.719 -10.715 10.121 29.644 Atomic orbital electron populations 1.21731 0.93794 1.02512 1.02357 1.21286 0.98457 0.91700 1.04233 1.30489 1.25920 1.06679 1.11712 1.07517 0.77448 0.76435 0.75903 1.93600 1.78535 1.73568 1.45737 1.93587 1.78630 1.73639 1.45801 1.30892 1.03416 1.31265 1.13384 1.19093 0.87394 0.84414 0.77105 1.90885 1.60624 1.39540 1.49680 1.45904 1.09222 1.07040 1.73974 1.21613 0.78363 0.96827 1.02820 1.22705 0.98851 0.93164 1.00021 1.23432 0.93600 1.00622 1.00449 1.21512 0.88811 0.94642 0.89682 1.42412 1.34833 1.13109 1.44730 1.19292 1.11890 0.90319 1.16207 0.91108 1.24781 0.98382 0.97583 1.00146 1.69660 1.21514 1.29324 1.37391 0.86184 0.77765 0.83107 0.79073 1.21677 1.21745 1.20772 1.24022 1.01275 1.00501 0.94509 0.92202 0.91785 0.92239 0.89950 0.89992 0.84836 0.84766 0.82321 0.82214 0.76157 0.90598 0.91148 0.89281 0.89966 0.91874 0.90734 0.78025 0.93406 0.92755 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.91 37.16 0.37 -0.19 16 2 C -0.12 -0.62 5.94 -26.73 -0.16 -0.78 16 3 C -0.62 -2.42 5.81 37.16 0.22 -2.21 16 4 S 2.45 21.61 3.96 -107.50 -0.43 21.19 16 5 O -0.92 -12.14 17.95 -59.54 -1.07 -13.21 16 6 O -0.92 -11.75 17.95 -59.51 -1.07 -12.82 16 7 C -0.66 -4.12 6.29 36.00 0.23 -3.89 16 8 C 0.54 6.43 7.85 -10.99 -0.09 6.34 16 9 O -0.53 -8.96 15.62 2.55 0.04 -8.92 16 10 N -0.71 -7.39 5.56 -60.29 -0.33 -7.73 16 11 C 0.13 1.61 5.51 -4.04 -0.02 1.58 16 12 C -0.13 -1.62 3.76 -89.67 -0.34 -1.95 16 13 C -0.14 -2.18 7.39 -25.92 -0.19 -2.37 16 14 C 0.17 3.12 4.47 -67.12 -0.30 2.82 16 15 N -0.71 -17.59 5.41 -52.64 -0.28 -17.88 16 16 C -0.25 -6.75 9.97 -15.06 -0.15 -6.90 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 20 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.16 -2.57 7.45 -25.77 -0.19 -2.76 16 25 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 31 H 0.13 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.16 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.16 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.40 2.84 8.47 -40.82 -0.35 2.49 16 35 H 0.08 1.11 7.85 -51.93 -0.41 0.70 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 41 H 0.39 10.18 7.91 -40.82 -0.32 9.85 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -39.29 380.51 -9.80 -49.09 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.37 Total: 5.49 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -0.72 Total: -10.77 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.10 Total: -52.94 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -2.10 Total: -34.95 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 21.61 SS G_CDS: -0.43 Total: 21.19 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.29 -9.80 -49.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100996774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.932 kcal (2) G-P(sol) polarization free energy of solvation -39.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds