Wall clock time and date at job start Tue Mar 31 2020 05:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46783 * 2 1 4 4 C 1.50699 * 109.47053 * 239.99797 * 2 1 3 5 5 O 1.21279 * 119.99855 * 264.99106 * 4 2 1 6 6 N 1.34771 * 119.99989 * 85.00330 * 4 2 1 7 7 C 1.46501 * 119.99775 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47017 * 179.97438 * 7 6 4 9 9 H 1.09002 * 110.64055 * 54.29710 * 8 7 6 10 10 C 1.54321 * 110.72129 * 291.15384 * 8 7 6 11 11 N 1.47019 * 107.27531 * 219.26706 * 10 8 7 12 12 C 1.36934 * 125.65046 * 178.97751 * 11 10 8 13 13 H 1.08004 * 119.99872 * 359.97438 * 12 11 10 14 14 C 1.38811 * 119.99970 * 180.02562 * 12 11 10 15 15 N 1.31616 * 120.00204 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99812 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47286 * 59.99763 * 16 14 12 18 18 H 1.48504 * 109.46907 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47243 * 299.99509 * 16 14 12 20 20 C 1.47431 * 108.70142 * 358.94050 * 11 10 8 21 21 C 1.55157 * 110.71845 * 177.43980 * 8 7 6 22 22 H 1.09001 * 111.00741 * 35.97146 * 21 8 7 23 23 C 1.53000 * 111.00230 * 272.11400 * 21 8 7 24 24 S 1.81396 * 109.47131 * 119.99572 * 2 1 3 25 25 C 1.81400 * 101.92218 * 304.99992 * 24 2 1 26 26 O 1.42097 * 108.58115 * 59.48803 * 24 2 1 27 27 O 1.42103 * 108.57718 * 190.51549 * 24 2 1 28 28 H 1.09004 * 109.47129 * 300.00114 * 1 2 3 29 29 H 1.08993 * 109.47460 * 60.00629 * 1 2 3 30 30 H 1.09004 * 109.46626 * 180.02562 * 1 2 3 31 31 H 0.97002 * 120.00110 * 359.97438 * 6 4 2 32 32 H 1.09003 * 109.47514 * 59.99650 * 7 6 4 33 33 H 1.09004 * 109.47101 * 299.99442 * 7 6 4 34 34 H 1.09001 * 109.88480 * 338.68818 * 10 8 7 35 35 H 1.09004 * 109.87910 * 99.84742 * 10 8 7 36 36 H 0.96999 * 120.00486 * 180.02562 * 15 14 12 37 37 H 1.08999 * 110.36190 * 142.96411 * 20 11 10 38 38 H 1.08999 * 110.36356 * 265.28933 * 20 11 10 39 39 H 1.08998 * 109.47366 * 60.00704 * 23 21 8 40 40 H 1.09006 * 109.46883 * 179.97438 * 23 21 8 41 41 H 1.08999 * 109.47315 * 299.99847 * 23 21 8 42 42 H 1.09007 * 109.47100 * 60.00536 * 25 24 2 43 43 H 1.09000 * 109.47243 * 179.97438 * 25 24 2 44 44 H 1.09002 * 109.47256 * 300.00161 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3209 -1.8871 -1.1759 6 7 2.1611 -0.0381 -2.3914 7 6 2.6500 -0.7287 -3.5874 8 6 2.7008 0.2542 -4.7588 9 1 3.2877 1.1345 -4.4966 10 6 1.2766 0.6576 -5.1953 11 7 1.2742 0.7306 -6.6636 12 6 0.1931 1.0385 -7.4456 13 1 -0.7611 1.2532 -6.9875 14 6 0.3233 1.0736 -8.8272 15 7 1.4860 0.8114 -9.3855 16 14 -1.1513 1.4943 -9.8939 17 1 -1.6434 2.8513 -9.5453 18 1 -0.7521 1.4652 -11.3240 19 1 -2.2305 0.5013 -9.6605 20 6 2.6288 0.4183 -7.1547 21 6 3.2760 -0.4316 -6.0262 22 1 2.9555 -1.4716 -6.0872 23 6 4.8020 -0.3272 -6.0614 24 16 2.1347 -0.8550 1.4812 25 6 1.2998 0.0579 2.8079 26 8 1.6409 -2.1873 1.4682 27 8 3.5342 -0.6348 1.5914 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9301 0.9030 -2.4350 32 1 1.9778 -1.5511 -3.8324 33 1 3.6493 -1.1205 -3.3977 34 1 0.5598 -0.0921 -4.8602 35 1 1.0219 1.6307 -4.7753 36 1 1.5772 0.8363 -10.3509 37 1 2.5739 -0.1575 -8.0786 38 1 3.1963 1.3356 -7.3114 39 1 5.2200 -0.8143 -5.1804 40 1 5.1790 -0.8163 -6.9597 41 1 5.0943 0.7228 -6.0691 42 1 0.2202 -0.0208 2.6795 43 1 1.5822 -0.3638 3.7725 44 1 1.5949 1.1065 2.7689 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102092021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:41 Heat of formation + Delta-G solvation = -83.469769 kcal Electronic energy + Delta-G solvation = -25344.619543 eV Core-core repulsion = 21618.265248 eV Total energy + Delta-G solvation = -3726.354295 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.07895 -38.08469 -37.25171 -36.23428 -34.85224 -33.97897 -32.90819 -30.79506 -29.96433 -29.21091 -26.18773 -25.56059 -24.72383 -22.83546 -21.09059 -19.92110 -19.47977 -18.97553 -17.81978 -17.38374 -16.82227 -16.42897 -15.96179 -15.65597 -15.40498 -15.04736 -14.51297 -14.05696 -13.83864 -13.68554 -13.62225 -13.58229 -13.22185 -12.92451 -12.67799 -12.58737 -12.41792 -12.26483 -12.19423 -11.96455 -11.59746 -11.48198 -11.35124 -11.19046 -10.94021 -10.90025 -10.81822 -10.39554 -10.16973 -10.05595 -9.94526 -9.80460 -9.43290 -9.13569 -8.69049 -6.88058 -5.69166 -3.11454 -0.44305 2.26537 2.38395 2.78766 3.37242 3.41547 3.43005 3.50952 3.64610 4.12995 4.16334 4.35108 4.44614 4.53164 4.62696 4.90358 5.03801 5.10203 5.18684 5.21826 5.24582 5.45385 5.53585 5.57321 5.70542 5.82883 6.01039 6.04342 6.15317 6.21619 6.29125 6.48330 6.54123 6.56562 6.73882 6.89203 7.25742 7.49278 7.58049 7.82615 7.92315 8.32529 9.17871 9.78706 10.43419 11.34394 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.002797 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.549888 B =10009.776463 C =10860.519763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.616 4.616 3 H 0.154 0.846 4 C 0.537 3.463 5 O -0.525 6.525 6 N -0.709 5.709 7 C 0.128 3.872 8 C -0.111 4.111 9 H 0.078 0.922 10 C 0.141 3.859 11 N -0.604 5.604 12 C -0.225 4.225 13 H 0.076 0.924 14 C -0.010 4.010 15 N -0.921 5.921 16 Si 0.915 3.085 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.160 3.840 21 C -0.111 4.111 22 H 0.072 0.928 23 C -0.135 4.135 24 S 2.448 3.552 25 C -0.662 4.662 26 O -0.909 6.909 27 O -0.932 6.932 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.404 0.596 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.017 0.983 36 H 0.253 0.747 37 H 0.107 0.893 38 H 0.013 0.987 39 H 0.045 0.955 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 1.960 21.847 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.724 4.724 3 H 0.172 0.828 4 C 0.320 3.680 5 O -0.402 6.402 6 N -0.360 5.360 7 C 0.005 3.995 8 C -0.130 4.130 9 H 0.096 0.904 10 C 0.015 3.985 11 N -0.330 5.330 12 C -0.354 4.354 13 H 0.094 0.906 14 C -0.206 4.206 15 N -0.570 5.570 16 Si 0.745 3.255 17 H -0.212 1.212 18 H -0.215 1.215 19 H -0.211 1.211 20 C 0.035 3.965 21 C -0.132 4.132 22 H 0.091 0.909 23 C -0.193 4.193 24 S 2.624 3.376 25 C -0.811 4.811 26 O -0.906 6.906 27 O -0.929 6.929 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.239 0.761 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.124 0.876 38 H 0.031 0.969 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.411 0.444 21.659 21.709 hybrid contribution -1.447 1.719 -0.634 2.334 sum -0.036 2.162 21.024 21.135 Atomic orbital electron populations 1.21652 0.87515 1.05314 1.05252 1.30691 1.09078 1.15400 1.17273 0.82772 1.19115 0.78306 0.86781 0.83825 1.90889 1.49812 1.14743 1.84754 1.45963 1.66081 1.14369 1.09540 1.21609 0.99814 0.95508 0.82566 1.22517 0.98615 0.97833 0.94063 0.90399 1.21334 0.93038 0.97124 0.86993 1.44466 1.07612 1.81848 0.99083 1.19013 0.88628 1.39808 0.87922 0.90619 1.24790 0.97198 1.02056 0.96516 1.69777 1.22067 1.55449 1.09679 0.86150 0.81569 0.78161 0.79587 1.21245 1.21528 1.21133 1.22076 0.83227 0.95691 0.95512 1.22692 0.94602 1.00208 0.95659 0.90941 1.21651 0.95368 1.01360 1.00885 1.07500 0.76094 0.76650 0.77352 1.30407 1.15327 1.15808 1.19576 1.93610 1.81522 1.30539 1.84883 1.93599 1.27653 1.86423 1.85196 0.90073 0.89435 0.89641 0.76111 0.90770 0.91055 0.95819 0.96498 0.93612 0.87570 0.96868 0.93576 0.92588 0.92940 0.84923 0.84890 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.88 37.16 0.33 -0.49 16 2 C -0.62 -4.85 3.15 -27.88 -0.09 -4.94 16 3 H 0.15 0.59 8.14 -51.92 -0.42 0.17 16 4 C 0.54 6.97 6.95 -10.99 -0.08 6.89 16 5 O -0.53 -9.12 15.48 -9.37 -0.15 -9.27 16 6 N -0.71 -8.59 5.43 -60.29 -0.33 -8.92 16 7 C 0.13 1.85 5.00 -4.04 -0.02 1.83 16 8 C -0.11 -1.78 2.44 -88.78 -0.22 -1.99 16 9 H 0.08 1.16 8.04 -51.93 -0.42 0.75 16 10 C 0.14 2.75 6.64 -3.07 -0.02 2.73 16 11 N -0.60 -15.04 3.40 -169.76 -0.58 -15.61 16 12 C -0.23 -6.17 10.27 -15.06 -0.15 -6.32 16 13 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 14 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 15 N -0.92 -26.46 10.09 55.49 0.56 -25.90 16 16 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.16 3.75 5.38 -2.26 -0.01 3.74 16 21 C -0.11 -2.01 3.11 -88.21 -0.27 -2.28 16 22 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 23 C -0.13 -2.04 9.32 37.16 0.35 -1.70 16 24 S 2.45 22.55 4.52 -107.50 -0.49 22.07 16 25 C -0.66 -2.40 10.01 101.05 1.01 -1.39 16 26 O -0.91 -12.33 17.21 -64.28 -1.11 -13.44 16 27 O -0.93 -12.05 18.10 -57.83 -1.05 -13.09 16 28 H 0.08 0.17 6.39 -51.93 -0.33 -0.16 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.40 3.82 8.40 -40.82 -0.34 3.48 16 32 H 0.07 1.18 8.00 -51.93 -0.42 0.77 16 33 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 34 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.11 2.85 5.87 -51.93 -0.30 2.54 16 38 H 0.01 0.33 8.00 -51.93 -0.42 -0.08 16 39 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 42 H 0.13 0.22 6.78 -51.92 -0.35 -0.13 16 43 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 44 H 0.13 0.18 8.14 -51.92 -0.42 -0.25 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -38.15 366.47 -9.07 -47.21 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -7.17 Total: -1.00 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 0.73 Total: -4.29 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.34 Total: -50.43 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -2.30 Total: -35.80 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 22.55 SS G_CDS: -0.49 Total: 22.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.15 -9.07 -47.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102092021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.257 kcal (2) G-P(sol) polarization free energy of solvation -38.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds