Wall clock time and date at job start Tue Mar 31 2020 05:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46783 * 2 1 4 4 C 1.50699 * 109.47053 * 239.99797 * 2 1 3 5 5 O 1.21279 * 119.99855 * 264.99106 * 4 2 1 6 6 N 1.34771 * 119.99989 * 85.00330 * 4 2 1 7 7 C 1.46501 * 119.99775 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47017 * 179.97438 * 7 6 4 9 9 H 1.09002 * 110.64055 * 54.29710 * 8 7 6 10 10 C 1.54321 * 110.72129 * 291.15384 * 8 7 6 11 11 N 1.47019 * 107.27531 * 219.26706 * 10 8 7 12 12 C 1.36934 * 125.65046 * 178.97751 * 11 10 8 13 13 H 1.08004 * 119.99872 * 359.97438 * 12 11 10 14 14 C 1.38811 * 119.99970 * 180.02562 * 12 11 10 15 15 N 1.31616 * 120.00204 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99812 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47286 * 59.99763 * 16 14 12 18 18 H 1.48504 * 109.46907 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47243 * 299.99509 * 16 14 12 20 20 C 1.47431 * 108.70142 * 358.94050 * 11 10 8 21 21 C 1.55157 * 110.71845 * 177.43980 * 8 7 6 22 22 H 1.09001 * 111.00741 * 35.97146 * 21 8 7 23 23 C 1.53000 * 111.00230 * 272.11400 * 21 8 7 24 24 S 1.81396 * 109.47131 * 119.99572 * 2 1 3 25 25 C 1.81400 * 101.92218 * 304.99992 * 24 2 1 26 26 O 1.42097 * 108.58115 * 59.48803 * 24 2 1 27 27 O 1.42103 * 108.57718 * 190.51549 * 24 2 1 28 28 H 1.09004 * 109.47129 * 300.00114 * 1 2 3 29 29 H 1.08993 * 109.47460 * 60.00629 * 1 2 3 30 30 H 1.09004 * 109.46626 * 180.02562 * 1 2 3 31 31 H 0.97002 * 120.00110 * 359.97438 * 6 4 2 32 32 H 1.09003 * 109.47514 * 59.99650 * 7 6 4 33 33 H 1.09004 * 109.47101 * 299.99442 * 7 6 4 34 34 H 1.09001 * 109.88480 * 338.68818 * 10 8 7 35 35 H 1.09004 * 109.87910 * 99.84742 * 10 8 7 36 36 H 0.96999 * 120.00486 * 180.02562 * 15 14 12 37 37 H 1.08999 * 110.36190 * 142.96411 * 20 11 10 38 38 H 1.08999 * 110.36356 * 265.28933 * 20 11 10 39 39 H 1.08998 * 109.47366 * 60.00704 * 23 21 8 40 40 H 1.09006 * 109.46883 * 179.97438 * 23 21 8 41 41 H 1.08999 * 109.47315 * 299.99847 * 23 21 8 42 42 H 1.09007 * 109.47100 * 60.00536 * 25 24 2 43 43 H 1.09000 * 109.47243 * 179.97438 * 25 24 2 44 44 H 1.09002 * 109.47256 * 300.00161 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3209 -1.8871 -1.1759 6 7 2.1611 -0.0381 -2.3914 7 6 2.6500 -0.7287 -3.5874 8 6 2.7008 0.2542 -4.7588 9 1 3.2877 1.1345 -4.4966 10 6 1.2766 0.6576 -5.1953 11 7 1.2742 0.7306 -6.6636 12 6 0.1931 1.0385 -7.4456 13 1 -0.7611 1.2532 -6.9875 14 6 0.3233 1.0736 -8.8272 15 7 1.4860 0.8114 -9.3855 16 14 -1.1513 1.4943 -9.8939 17 1 -1.6434 2.8513 -9.5453 18 1 -0.7521 1.4652 -11.3240 19 1 -2.2305 0.5013 -9.6605 20 6 2.6288 0.4183 -7.1547 21 6 3.2760 -0.4316 -6.0262 22 1 2.9555 -1.4716 -6.0872 23 6 4.8020 -0.3272 -6.0614 24 16 2.1347 -0.8550 1.4812 25 6 1.2998 0.0579 2.8079 26 8 1.6409 -2.1873 1.4682 27 8 3.5342 -0.6348 1.5914 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9301 0.9030 -2.4350 32 1 1.9778 -1.5511 -3.8324 33 1 3.6493 -1.1205 -3.3977 34 1 0.5598 -0.0921 -4.8602 35 1 1.0219 1.6307 -4.7753 36 1 1.5772 0.8363 -10.3509 37 1 2.5739 -0.1575 -8.0786 38 1 3.1963 1.3356 -7.3114 39 1 5.2200 -0.8143 -5.1804 40 1 5.1790 -0.8163 -6.9597 41 1 5.0943 0.7228 -6.0691 42 1 0.2202 -0.0208 2.6795 43 1 1.5822 -0.3638 3.7725 44 1 1.5949 1.1065 2.7689 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102092021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:40 Heat of formation + Delta-G solvation = -114.124004 kcal Electronic energy + Delta-G solvation = -25345.948811 eV Core-core repulsion = 21618.265248 eV Total energy + Delta-G solvation = -3727.683562 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.14788 -39.61693 -38.03786 -37.01920 -36.19462 -34.94199 -34.32333 -32.56870 -30.82985 -30.12462 -27.89817 -26.84612 -25.74011 -24.35960 -22.21121 -21.51208 -20.86257 -19.75105 -18.97119 -18.56082 -18.15061 -17.20804 -17.01655 -16.80047 -16.45086 -16.33252 -15.90139 -15.57783 -15.06360 -14.74713 -14.48045 -14.20042 -14.09182 -13.96507 -13.91423 -13.55338 -13.39610 -13.24036 -13.14123 -13.04656 -12.99332 -12.88851 -12.78451 -12.66036 -12.49759 -12.02060 -11.96403 -11.84476 -11.65341 -11.51854 -11.43116 -11.33837 -10.96342 -10.73565 -10.25014 -8.88202 -7.77173 -5.21783 -1.05090 1.32901 1.46202 1.49174 1.55554 1.77562 1.90500 2.49225 2.86114 3.05939 3.31957 3.38783 3.60653 3.69107 3.77746 3.87231 3.94904 4.01168 4.13922 4.28957 4.34391 4.47403 4.58421 4.60715 4.66292 4.72927 4.76178 4.82498 4.95479 4.99281 5.07820 5.12118 5.19399 5.27362 5.36551 5.39219 5.49434 5.70722 5.84033 6.29171 6.32128 6.98721 7.10852 7.78968 8.42586 9.24165 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.002797 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.549888 B =10009.776463 C =10860.519763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.603 4.603 3 H 0.202 0.798 4 C 0.525 3.475 5 O -0.578 6.578 6 N -0.701 5.701 7 C 0.137 3.863 8 C -0.090 4.090 9 H 0.099 0.901 10 C 0.138 3.862 11 N -0.629 5.629 12 C -0.240 4.240 13 H 0.081 0.919 14 C -0.068 4.068 15 N -0.949 5.949 16 Si 0.980 3.020 17 H -0.276 1.276 18 H -0.295 1.295 19 H -0.279 1.279 20 C 0.163 3.837 21 C -0.103 4.103 22 H 0.064 0.936 23 C -0.128 4.128 24 S 2.423 3.577 25 C -0.625 4.625 26 O -0.972 6.972 27 O -0.985 6.985 28 H 0.131 0.869 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.420 0.580 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.020 0.980 35 H 0.034 0.966 36 H 0.247 0.753 37 H 0.067 0.933 38 H -0.008 1.008 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.163 0.837 43 H 0.145 0.855 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 4.357 24.557 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.712 4.712 3 H 0.220 0.780 4 C 0.310 3.690 5 O -0.458 6.458 6 N -0.352 5.352 7 C 0.013 3.987 8 C -0.109 4.109 9 H 0.117 0.883 10 C 0.013 3.987 11 N -0.355 5.355 12 C -0.369 4.369 13 H 0.099 0.901 14 C -0.260 4.260 15 N -0.598 5.598 16 Si 0.808 3.192 17 H -0.202 1.202 18 H -0.221 1.221 19 H -0.205 1.205 20 C 0.038 3.962 21 C -0.123 4.123 22 H 0.082 0.918 23 C -0.186 4.186 24 S 2.608 3.392 25 C -0.779 4.779 26 O -0.969 6.969 27 O -0.982 6.982 28 H 0.149 0.851 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.257 0.743 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.038 0.962 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.010 0.990 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.181 0.819 43 H 0.164 0.836 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.232 2.838 24.377 24.543 hybrid contribution -1.146 1.030 -1.416 2.093 sum -0.914 3.867 22.961 23.302 Atomic orbital electron populations 1.21849 0.85627 1.04868 1.07973 1.30631 1.10384 1.16837 1.13347 0.78044 1.20005 0.77261 0.86455 0.85239 1.90871 1.51897 1.17333 1.85747 1.45834 1.65628 1.14998 1.08730 1.21313 0.99771 0.94610 0.82971 1.22343 0.96444 0.98558 0.93542 0.88284 1.21510 0.95174 0.97789 0.84214 1.44789 1.07454 1.81831 1.01396 1.19417 0.89695 1.39131 0.88667 0.90099 1.25635 0.99813 1.02702 0.97861 1.70051 1.23867 1.56639 1.09280 0.85136 0.78517 0.78259 0.77320 1.20201 1.22106 1.20463 1.21830 0.83304 0.94898 0.96157 1.22529 0.96476 0.98739 0.94549 0.91800 1.21602 0.92849 1.02016 1.02088 1.07716 0.75672 0.76729 0.79098 1.30121 1.15965 1.16298 1.15565 1.93538 1.81998 1.35198 1.86145 1.93532 1.31358 1.87093 1.86218 0.85114 0.88983 0.91773 0.74263 0.92720 0.90621 0.96153 0.94837 0.94374 0.91483 0.98996 0.91006 0.92746 0.92481 0.81879 0.83638 0.81443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.88 71.98 0.64 -0.55 16 2 C -0.60 -7.81 3.15 29.85 0.09 -7.71 16 3 H 0.20 0.53 8.14 -2.39 -0.02 0.51 16 4 C 0.53 13.16 6.95 87.66 0.61 13.77 16 5 O -0.58 -20.73 15.48 11.25 0.17 -20.55 16 6 N -0.70 -15.71 5.43 -463.05 -2.51 -18.22 16 7 C 0.14 3.83 5.00 86.38 0.43 4.27 16 8 C -0.09 -2.75 2.44 -9.60 -0.02 -2.77 16 9 H 0.10 2.68 8.04 -2.39 -0.02 2.66 16 10 C 0.14 5.26 6.64 86.73 0.58 5.84 16 11 N -0.63 -31.67 3.40 -691.01 -2.35 -34.02 16 12 C -0.24 -13.28 10.27 84.03 0.86 -12.42 16 13 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 14 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 15 N -0.95 -56.35 10.09 21.65 0.22 -56.13 16 16 Si 0.98 45.21 29.55 68.60 2.03 47.23 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 C 0.16 7.88 5.38 87.02 0.47 8.35 16 21 C -0.10 -3.69 3.11 -9.23 -0.03 -3.72 16 22 H 0.06 2.40 8.05 -2.39 -0.02 2.38 16 23 C -0.13 -3.72 9.32 71.98 0.67 -3.05 16 24 S 2.42 41.54 4.52 -56.49 -0.26 41.29 16 25 C -0.63 -1.30 10.01 113.37 1.14 -0.17 16 26 O -0.97 -27.30 17.21 -121.20 -2.09 -29.39 16 27 O -0.98 -25.39 18.10 -127.37 -2.31 -27.70 16 28 H 0.13 -0.25 6.39 -2.38 -0.02 -0.26 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.42 6.62 8.40 -92.71 -0.78 5.84 16 32 H 0.05 1.76 8.00 -2.39 -0.02 1.74 16 33 H 0.08 2.09 8.13 -2.38 -0.02 2.07 16 34 H 0.02 0.80 7.73 -2.39 -0.02 0.78 16 35 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 37 H 0.07 3.78 5.87 -2.39 -0.01 3.77 16 38 H -0.01 -0.41 8.00 -2.39 -0.02 -0.43 16 39 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 40 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.06 1.61 8.08 -2.39 -0.02 1.59 16 42 H 0.16 -0.52 6.78 -2.39 -0.02 -0.54 16 43 H 0.15 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.17 -0.73 8.14 -2.39 -0.02 -0.75 16 Total: -1.00 -91.04 366.47 -0.97 -92.01 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.21 Total: 6.98 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 5.90 Total: -1.52 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -4.64 Total: -108.37 kcal Atomic # 8 Polarization: -73.42 SS G_CDS: -4.22 Total: -77.64 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 41.54 SS G_CDS: -0.26 Total: 41.29 kcal Total: -91.04 -0.97 -92.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102092021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.110 kcal (2) G-P(sol) polarization free energy of solvation -91.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds